Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0007830 | OGI:01020090 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:6276694-6277984 | ||||||||
| Gene Symbol | SCP2, OsSCP2, SCP3, OsSCP3 | ||||||||||
| DNA seq | atggctccgccgccggcggcgcttctcctcgtcgtgctcctgctcgtcggcttcgttagcgccagagccatcacaccctcagcttaagcgtcggcggcgttccccaaggaagccctgacgaccaagtccggctacctccccatcccgacagccaacgcctcgctcttcttcgcctactacgaggccacgcacccgctcacgccgccggcctccacgccgatcatcctctggctccagggcggccccggctgctccggcctcaccggcaatttcttcgagctcggcccctacttcgtcaaccacgacgcgctctccctctcgcccaacccattcgcgtggaatcgccGgtttggccttctcttcatcgacaacccgctcggcaccggcttcagcgccgcgccgtcccccgccgccatccccaccaaccaGtttgtcgtcgccgcgcacctcttcaccgcgttgcagtcgttcttcgcgctccagccgggcttccgctcccgccccttcttcctcaccggcgagagctacgccggcaagtatgtcccggcggctgggtcgtacatcctggccgtgaacccgacgctgccgaagcggctgcgggttAacctccacggcgtggccatcgacaacgggctgacgcaccccgtcgcgcaggtggcgacgcacgcggacaccgcctacttcatgggcctgatcaacgccaagcagaggcgggagctggaggcgctgcaggcgagagccgtcgagctgacaaacgcggcgaggtggagcgaggcggccgacgcgagggagctcgtgctgtcgttgctggagaacgccacgggcctggcgacgctgttcgacgcggcgaagcagcgcccctacgagacgggccacgtGgggaagttcgtgaaccgggcggaggtgaaggcggcactgggcgcacgcactgacgtggagtgggaggactgcagcgacacggtgggcgcggcgatgcacggggacgtgatgaagagcgtgaagccgggggtggaggcgctgctgcggggAacgcgcgtgctgctgtaccagggcatccgcgacctcagggacggcgtggtgtcgacggaggcgtggatgcgggagctcAagtgggacggcctgaccgccttcctcgtcgccgaccgcgccgtgtggcgcatcggcgaggatGtcacgcccaaaaatttagcccaaatttccagactaTttggtgtattaaatccccgtccAgGAccagccagggtacacAaaacgacaagtaataaacAgttccaaacgtaaataaagcgta
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| CDS seq | atggctccgccgccggcggcgcttctcctcgtcgtgctcctgctcgtcggcttcctcggcccctacttcgtcaaccacgacgcgctctccctctcgcccaacccattcgcgtggaatcgccGgtttggccttctcttcatcgacaacccgctcggcaccggcttcagcgccgcgccgtcccccgccgccatccccaccaaccaGtttgtcgtcgccgcgcacctcttcaccgcgttgcagtcgttcttcgcgctccagccgggcttccgctcccgccccttcttcctcaccggcgagagctacgccggcaagtatgtcccggcggctgggtcgtacatcctggccgtgaacccgacgctgccgaagcggctgcgggttAacctccacggcgtggccatcgacaacgggctgacgcaccccgtcgcgcaggtggcgacgcacgcggacaccgcctacttcatgggcctgatcaacgccaagcagaggcgggagctggaggcgctgcaggcgagagccgtcgagctgacaaacgcggcgaggtggagcgaggcggccgacgcgagggagctcgtgctgtcgttgctggagaacgccacgggcctggcgacgctgttcgacgcggcgaagcagcgcccctacgagacgggccacgtGgggaagttcgtgaaccgggcggaggtgaaggcggcactgggcgcacgcactgacgtggagtgggaggactgcagcgacacggtgggcgcggcgatgcacggggacgtgatgaagagcgtgaagccgggggtggaggcgctgctgcggggAacgcgcgtgctgctgtaccagggcatccgcgacctcagggacggcgtggtgtcgacggaggcgtggatgcgggagctcAagtgggacggcctgaccgccttcctcgtcgccgaccgcgccgtgtggcgcatcggcgaggatGtcacgcccaaaaatttagcccaaatttccagactaTttggtgtattaaatccccgtccAgGAccagccagggtacacAaaacgacaagtaataaacAgttccaaacgtaa
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| Protein seq | MAPPPAALLLVVLLLVGFLGPYFVNHDALSLSPNPFAWNRRFGLLFIDNPLGTGFSAAPSPAAIPTNQFVVAAHLFTALQSFFALQPGFRSRPFFLTGESYAGKYVPAAGSYILAVNPTLPKRLRVNLHGVAIDNGLTHPVAQVATHADTAYFMGLINAKQRRELEALQARAVELTNAARWSEAADARELVLSLLENATGLATLFDAAKQRPYETGHVGKFVNRAEVKAALGARTDVEWEDCSDTVGAAMHGDVMKSVKPGVEALLRGTRVLLYQGIRDLRDGVVSTEAWMRELKWDGLTAFLVADRAVWRIGEDVTPKNLAQISRLFGVLNPRPGPARVHKTTSNKQFQT |
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| Function | Serine carboxypeptidase-like 50 [UniProtKB/Swiss-Prot:Q9M9Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0007830 | OsLaMu_01g0007830.01 | Chr01 | 6276694 | 6277984 | + | NAM | ||
| CDS seq | atggctccgccgccggcggcgcttctcctcgtcgtgctcctgctcgtcggcttcctcggcccctacttcgtcaaccacgacgcgctctccctctcgcccaacccattcgcgtggaatcgccGgtttggccttctcttcatcgacaacccgctcggcaccggcttcagcgccgcgccgtcccccgccgccatccccaccaaccaGtttgtcgtcgccgcgcacctcttcaccgcgttgcagtcgttcttcgcgctccagccgggcttccgctcccgccccttcttcctcaccggcgagagctacgccggcaagtatgtcccggcggctgggtcgtacatcctggccgtgaacccgacgctgccgaagcggctgcgggttAacctccacggcgtggccatcgacaacgggctgacgcaccccgtcgcgcaggtggcgacgcacgcggacaccgcctacttcatgggcctgatcaacgccaagcagaggcgggagctggaggcgctgcaggcgagagccgtcgagctgacaaacgcggcgaggtggagcgaggcggccgacgcgagggagctcgtgctgtcgttgctggagaacgccacgggcctggcgacgctgttcgacgcggcgaagcagcgcccctacgagacgggccacgtGgggaagttcgtgaaccgggcggaggtgaaggcggcactgggcgcacgcactgacgtggagtgggaggactgcagcgacacggtgggcgcggcgatgcacggggacgtgatgaagagcgtgaagccgggggtggaggcgctgctgcggggAacgcgcgtgctgctgtaccagggcatccgcgacctcagggacggcgtggtgtcgacggaggcgtggatgcgggagctcAagtgggacggcctgaccgccttcctcgtcgccgaccgcgccgtgtggcgcatcggcgaggatGtcacgcccaaaaatttagcccaaatttccagactaTttggtgtattaaatccccgtccAgGAccagccagggtacacAaaacgacaagtaataaacAgttccaaacgtaa
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| Protein seq | MAPPPAALLLVVLLLVGFLGPYFVNHDALSLSPNPFAWNRRFGLLFIDNPLGTGFSAAPSPAAIPTNQFVVAAHLFTALQSFFALQPGFRSRPFFLTGESYAGKYVPAAGSYILAVNPTLPKRLRVNLHGVAIDNGLTHPVAQVATHADTAYFMGLINAKQRRELEALQARAVELTNAARWSEAADARELVLSLLENATGLATLFDAAKQRPYETGHVGKFVNRAEVKAALGARTDVEWEDCSDTVGAAMHGDVMKSVKPGVEALLRGTRVLLYQGIRDLRDGVVSTEAWMRELKWDGLTAFLVADRAVWRIGEDVTPKNLAQISRLFGVLNPRPGPARVHKTTSNKQFQT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0215100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11670 | RBH | 0.460580 | 0.525007 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0215100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007940 | RBH | 0.158946 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008320 | RBH | 0.889693 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007840 | RBH | 0.059089 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007940 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0102200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007880 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0103000 | RBH | 1.4809135 | 0 | 0.591427 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009460 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007930 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007940 | RBH | 0.087193 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028210 | SBH | 0.122319 | 0.642023 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007780 | RBH | 0.070952 | 0.0 | 0.908918 |
