Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0007270 | OGI:01018760 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:5736054-5739302 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaccaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccctcaaaattatctctctaccacacatcttggagatgaacttggcagcctcatggcaatggctgcaaactcttgaattcttggtcacacggattggccgcccttgtgacagattcagaacaccgaatgccacggcgagctttgaactatgcccacagagcgcctcatcatgaacagcatcgtcagcgcccatcagagcatattttttcttaggatcatggccttcttcctgcatcctcctggcaacatcatccaggaactctgcaatcctcattccttgtggatgatttcggttttccgcgaagaagatatgggcctttcctctcacttcaatccagctgcagccagtgttctcacggagcccacggccaccaaccttgttcttgagcttcctgacagcctcccatctctcagcttcagcatagatgttggcaagaagaacatagtaccctgtgttctcaggttccagctcaaagaccatctctgctaccttctctgcaagcttgacattcctgtgaattcgacatccacgaagcaatgagacccagatgctcgaatccggttcgatcggcattgtctctatgaactcataagcttccttcagattcccagtgtggcatagtagatcgaccatgcaggcgtagtgcttcagtttaggctctattctgtgctcattccgcattgcattgaagaatctccatccctcatctcttaggcctgaatggctacaagcatacagaatggcactgaaagaaccggcatcaggctgaatgccacttcccttcatctgctcaaagagggcaatggcatctctaccgcgaccatgcatgccatatccagctatcatgatggtccatgagataaggttcttgttggttaacatgtcaaacaaacggcgtgctagcagtaatgcaccacatttaacatacatgtcgacgagtgcattggctacaaaattatcttccaagtaccctctccgtactgcgtaggcatgcatctccctgcctcgctccagcgatgaaaggcttgctgcagctggaaggatgcaggccatggttaccgcattaggtcggagttggagtagcatttcattgaataaggtgaaggcttcattggcaagattgctcctggagtaacctcctattagtgtattccatgagattgtatccttttttgtcacatgatcgaaaataaatcttgcctcttccatatacccacatttcacatacatttccatcagtgcattagcaactggaagaacttcctcaattccatttctgatggcatatccatggacagatttcccatgtttcagtgattcgttgccagcaaatgcatcaagagcactggtgattgcgaagacatctggtctgataccttctaatcccatttcctgaaataacccagccactttgtcaaaatgcccagccctggtataacttgtgatcattgctgtccatgacaccacatttttctgttccatattcctgaatatcttattagtgctacgccaatctgagcaatttgaatacatatcaagaagagcattaccaagagatgtctcactaatcaatccagttctcacagaatacccatgaaccactcctcctataaatgaatagtgcgactgtacacaagccggcataacacttagcagtgtagtagagtccagctcctgtccttctaaccacattcttacaaacaactcaacagctttatcatatagaccattggaagcacatccaccaattatagaattccaagaaatgatgtcacgttgaggcatttcatcaaacaccatgagtgcgtcttcaatcctgttggattttgcatagaatgatatcagtgcattgcaaactgcacactgtgccccaaaaccgtacttcacaagatacccatgaaccaccaaaccatccattacaccagacaaaccagtgatacactttaggaggcaagaaatggtatgctcatcaggagtaattccacagtcatgcattttctcaaacagcaagaggctttcttgaaatttaccaagcttcgcatacccacccatcattagattccatgcatgtaaattgcttttcgatgacattgcatcaaaaaccttccttgcatagcccaattcaccacatttaacatacatgaacaccagtttggatcccagattttcatctatcccattctccaaagattcaaattcccaaagtagtccggttttaactgagtatccatgaagcacccttccgacaagattgtatcctaattcagcacaagcaggcaaaacgccaagcatcgtcactggattgatctcgaggccttcagaccacattttggcgaaaagctcaatagacttaccatgccatccattcgaaaagcacccgctaatcacagaattccaagaaatgacatcccggtgaggcatcccatcaaacacctgtagtgaaccatcaacatggccacacctagagtacagtgctataagcgcatttccaaccgcacattgcacccccaaacccaacttctcaaggtacccatgaactacttcaccatctgcaatactgcccaaaccggcaatgcatttcaagacacacgaaatagcatgtgcatccggcctaaccccagaacagtgcatctgcctaaacagcaaaacgccgtcttggaactcaccagctttcgcgtaaccgctcatcagtgaagtccaaactcgcacgtcactcacttgaggcatttcatcaaacaccttccttgcattctccaaatccccacatttcacatacatcagcaccaatttccttccgagaacactatccattccatcttttccaacaccagatgcgcgaaccaagaaatgggctctcttcccggcctccaaagatctcagatccgagcagagctggacgaccgcgccgtagctccgggcgtcgacgccatccgagccgagcaacctcaacgcctcctctaactcacccgcccgacagagcctctcaatctgcacgtccacatcggttctcggtgcccgactccgcgaattcttggcgcccctcggagcagaggccgcctccaggacatgaccggacgccgcgaggacgtcgcacctaacccttgttcttgggctgctgttcttgggaggcggccatggaggaggggctcggaggtggctggaaacggaggtgagtggaggcgtcgccat
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| CDS seq | atggcgacgcctccactcacctccgtttccagccacctccgagcccctcctccatggccgcctcccaagaacagcagcccaagaacaagggttaggtgcgacgtcctcgcggcgtccggtcatgtcctggaggcggcctctgctccgaggggcgccaagaattcgcggagtcgggcaccgagaaccgatgtggacgtgcagattgagaggctctgtcgggcgggtgagttagaggaggcgttgaggttgctcggctcggatggcgtcgacgcccggagctacggcgcggtcgtccagctctgctcggatctgagatctttggaggccgggaagagagcccatttcttggttcgcgcatctggtgttggaaaagatggaatggataatggtgaagtagttcatgggtaccttgagaagttgggtttgggggtgcaatgtgcggttggaaatgcgcttatagcactgtactctaggtgtggccatgttgatggttcactacaggtgtttgatgggatgcctcaccgggatgtcatttcttggaattctgtgattagcgggtgcttttcgaatggatggcatggtaagtctattgagcttttcgccaaaatgtggtctgaaggcctcgagatcaatccagtgacgatgcttggcgttttgcctgcttgtgctgaattaggatacaatcttgtcggaagggtgcttcatggatactcagttaaaaccggactactttgggaatttgaatctttggagaatgggatagatgaaaatctgggatccaaactggtgttcatgtatgttaaatgtggtgaattgggctatgcaaggaaggtttttgatgcaatgtcatcgaaaagcaatttacatgcatggaatctaatgatgggtgggtatgcgaagcttggtaaatttcaagaaagcctcttgctgtttgagaaaatgcatgactgtggaattactcctgatgagcataccatttcttgcctcctaaagtgtatcactggtttgtctggtgtaatggatggtttggtggttcatgggtatcttgtgaagtacggttttggggcacagtgtgcagtttgcaatgcactgatatcattctatgcaaaatccaacaggattgaagacgcactcatggtgtttgatgaaatgcctcaacgtgacatcatttcttggaattctataattggtggatgtgcttccaatggtctatatgataaagctgttgagttgtttgtaagaatgtggttagaaggacaggagctggactctactacactgctaagtgttatgccggcttgtgtacagtcgcactattcatttataggaggagtggttcatgggtattctgtgagaactggattgattagtgagacatctcttggtaatgctcttcttgatatgtattcaaattgctcagattggcgtagcactaataagatattcaggaatatggaacagaaaaatgtggtgtcatggacagcaatgatcacaagttataccagggctgggcattttgacaaagtggctgggttatttcaggaaatgggattagaaggtatcagaccagatgtcttcgcaatcaccagtgctcttgatgcatttgctggcaacgaatcactgaaacatgggaaatctgtccatggatatgccatcagaaatggaattgaggaagttcttccagttgctaatgcactgatggaaatgtatgtgaaatgtgggtatatggaagaggcaagatttattttcgatcatgtgacaaaaaaggatacaatctcatggaatacactaataggaggttactccaggagcaatcttgccaatgaagccttcaccttattcaatgaaatgctactccaactccgacctaatgcggtaaccatggcctgcatccttccagctgcagcaagcctttcatcgctggagcgaggcagggagatgcatgcctacgcagtacggagagggtacttggaagataattttgtagccaatgcactcgtcgacatgtatgttaaatgtggtgcattactgctagcacgccgtttgtttgacatgttaaccaacaagaaccttatctcatggaccatcatgatagctggatatggcatgcatggtcgcggtagagatgccattgccctctttgagcagatgaagggaagtggcattcagcctgatgccgagttcctggatgatgttgccaggaggatgcaggaagaaggccatgatcctaagaaaaaatatgctctgatgggcgctgacgatgctgttcatgatgaggcgctctgtgggcatagttcaaagctcgccgtggcattcggtgttctgaatctgtcacaagggcggccaatccgtgtgaccaagaattcaagagtttgcagccattgccatgaggctgccaagttcatctccaagatgtgtggtagagagataattttgagggattcaaatagatttcaccattttgaagaaggtaggtgttcttgcagaggttattggtga
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| Protein seq | MATPPLTSVSSHLRAPPPWPPPKNSSPRTRVRCDVLAASGHVLEAASAPRGAKNSRSRAPRTDVDVQIERLCRAGELEEALRLLGSDGVDARSYGAVVQLCSDLRSLEAGKRAHFLVRASGVGKDGMDNGEVVHGYLEKLGLGVQCAVGNALIALYSRCGHVDGSLQVFDGMPHRDVISWNSVISGCFSNGWHGKSIELFAKMWSEGLEINPVTMLGVLPACAELGYNLVGRVLHGYSVKTGLLWEFESLENGIDENLGSKLVFMYVKCGELGYARKVFDAMSSKSNLHAWNLMMGGYAKLGKFQESLLLFEKMHDCGITPDEHTISCLLKCITGLSGVMDGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW |
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| Function | Pentatricopeptide repeat-containing protein DOT4, chloroplastic [UniProtKB/Swiss-Prot:Q9SN39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0007270 | OsLaMu_01g0007270.01 | Chr01 | 5736054 | 5739302 | - | NAM | ||
| CDS seq | atggcgacgcctccactcacctccgtttccagccacctccgagcccctcctccatggccgcctcccaagaacagcagcccaagaacaagggttaggtgcgacgtcctcgcggcgtccggtcatgtcctggaggcggcctctgctccgaggggcgccaagaattcgcggagtcgggcaccgagaaccgatgtggacgtgcagattgagaggctctgtcgggcgggtgagttagaggaggcgttgaggttgctcggctcggatggcgtcgacgcccggagctacggcgcggtcgtccagctctgctcggatctgagatctttggaggccgggaagagagcccatttcttggttcgcgcatctggtgttggaaaagatggaatggataatggtgaagtagttcatgggtaccttgagaagttgggtttgggggtgcaatgtgcggttggaaatgcgcttatagcactgtactctaggtgtggccatgttgatggttcactacaggtgtttgatgggatgcctcaccgggatgtcatttcttggaattctgtgattagcgggtgcttttcgaatggatggcatggtaagtctattgagcttttcgccaaaatgtggtctgaaggcctcgagatcaatccagtgacgatgcttggcgttttgcctgcttgtgctgaattaggatacaatcttgtcggaagggtgcttcatggatactcagttaaaaccggactactttgggaatttgaatctttggagaatgggatagatgaaaatctgggatccaaactggtgttcatgtatgttaaatgtggtgaattgggctatgcaaggaaggtttttgatgcaatgtcatcgaaaagcaatttacatgcatggaatctaatgatgggtgggtatgcgaagcttggtaaatttcaagaaagcctcttgctgtttgagaaaatgcatgactgtggaattactcctgatgagcataccatttcttgcctcctaaagtgtatcactggtttgtctggtgtaatggatggtttggtggttcatgggtatcttgtgaagtacggttttggggcacagtgtgcagtttgcaatgcactgatatcattctatgcaaaatccaacaggattgaagacgcactcatggtgtttgatgaaatgcctcaacgtgacatcatttcttggaattctataattggtggatgtgcttccaatggtctatatgataaagctgttgagttgtttgtaagaatgtggttagaaggacaggagctggactctactacactgctaagtgttatgccggcttgtgtacagtcgcactattcatttataggaggagtggttcatgggtattctgtgagaactggattgattagtgagacatctcttggtaatgctcttcttgatatgtattcaaattgctcagattggcgtagcactaataagatattcaggaatatggaacagaaaaatgtggtgtcatggacagcaatgatcacaagttataccagggctgggcattttgacaaagtggctgggttatttcaggaaatgggattagaaggtatcagaccagatgtcttcgcaatcaccagtgctcttgatgcatttgctggcaacgaatcactgaaacatgggaaatctgtccatggatatgccatcagaaatggaattgaggaagttcttccagttgctaatgcactgatggaaatgtatgtgaaatgtgggtatatggaagaggcaagatttattttcgatcatgtgacaaaaaaggatacaatctcatggaatacactaataggaggttactccaggagcaatcttgccaatgaagccttcaccttattcaatgaaatgctactccaactccgacctaatgcggtaaccatggcctgcatccttccagctgcagcaagcctttcatcgctggagcgaggcagggagatgcatgcctacgcagtacggagagggtacttggaagataattttgtagccaatgcactcgtcgacatgtatgttaaatgtggtgcattactgctagcacgccgtttgtttgacatgttaaccaacaagaaccttatctcatggaccatcatgatagctggatatggcatgcatggtcgcggtagagatgccattgccctctttgagcagatgaagggaagtggcattcagcctgatgccgagttcctggatgatgttgccaggaggatgcaggaagaaggccatgatcctaagaaaaaatatgctctgatgggcgctgacgatgctgttcatgatgaggcgctctgtgggcatagttcaaagctcgccgtggcattcggtgttctgaatctgtcacaagggcggccaatccgtgtgaccaagaattcaagagtttgcagccattgccatgaggctgccaagttcatctccaagatgtgtggtagagagataattttgagggattcaaatagatttcaccattttgaagaaggtaggtgttcttgcagaggttattggtga
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| Protein seq | MATPPLTSVSSHLRAPPPWPPPKNSSPRTRVRCDVLAASGHVLEAASAPRGAKNSRSRAPRTDVDVQIERLCRAGELEEALRLLGSDGVDARSYGAVVQLCSDLRSLEAGKRAHFLVRASGVGKDGMDNGEVVHGYLEKLGLGVQCAVGNALIALYSRCGHVDGSLQVFDGMPHRDVISWNSVISGCFSNGWHGKSIELFAKMWSEGLEINPVTMLGVLPACAELGYNLVGRVLHGYSVKTGLLWEFESLENGIDENLGSKLVFMYVKCGELGYARKVFDAMSSKSNLHAWNLMMGGYAKLGKFQESLLLFEKMHDCGITPDEHTISCLLKCITGLSGVMDGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.353715 | 1.109780 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0205200 | RBH | 2.085876 | 1.838130 | 2.044668 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10800 | RBH | 1.249025 | 1.044930 | 0.505130 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0205200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007750 | RBH | 0.346266 | 0.739606 | 1.382654 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007390 | RBH | 0.095458 | 0.0 | 1.114280 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007720 | RBH | 0.726927 | 1.326663 | 2.695299 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007240 | RBH | 0.164486 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007390 | RBH | 5.675639 | 0.000000 | 2.698705 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0094600 | RBH | 8.74526 | 3.334713 | 2.1599035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007300 | RBH | 0.552160 | 0.000000 | 0.555847 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0094700 | RBH | 6.1131035 | 0.8484865 | 3.5663925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007160 | RBH | 0.175069 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007350 | RBH | 0.658219 | 1.827058 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007350 | RBH | 5.785222 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007350 | RBH | 1.272345 | 0.0 | 1.157008 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007360 | RBH | 0.628642 | 0.000000 | 0.634215 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007170 | RBH | 1.703537 | 0.0 | 3.072824 |
