Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0004120 | OGI:01011050 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:3151160-3152908 | ||||||||
| Gene Symbol | FLA8, OsFLA8 | ||||||||||
| DNA seq | cagttcagttacgcacaactcatgtttatttagtaccattacattacagaaaaatgggaatccaatgatacattacatactcctagcaattacaataataatggtaatgatatgacgagcaataattcaaccaaaaatggacagaacattaagaaaagaacaccttttcaacaacaaaaaaaattaagagagagaaaaaaaacaacagaaaaaattatggaaggcgcgtacaatacagagatctcgctcaaacttgtcatcaacctcatcgtcacagccccaaccagacgctcgccaaggcaagaaccaccccgacaccagcaccggccgtcaccctcgccgccgcgagagacggggtcgtcgcgtccggcgtcgcgtcggcggcctcgggcgcgtcggcgaccgacgtggccggcgtcttccccttcttcttcgtcgccggcgacagcggcgcgggcgcgggcgccggcgtgccgtagatggccatcgggagcagcaccttgtccacctggtacacgacgaggttgtcgccggtgtagagcgcgttgccgacggtggcgttgacgacgccggtggagatgttcacctgctgcccctccgccgtcacgttgagcgggtactgccccggcgagttgctgccggcctgcgtccggagcgggttgctgacggtgtcgaactgcgacatggggatcagcgtggacagcacgtggtactgcaccagcgagttcttctgctggtcggacagcgagttgagcgtgccggaggggagcgacgtgaacgcgttgtccgtcggcgcgaacaccgtcagcccgttgcgcgagctgttcagctggttgtcgatctgctccgccgcgccggtggaccgcatcagcctgatgagcgtgttaaactgcccggccttggcgagcacccccgtgatgttcgtcgtcttcgtcgacgccggcgcgggcgccgctggcgtcgccggtgccgccggtgtcgccggcgccggcgcggccggcgccgccgtcgggccctgagccgacgccgcgatggccatggacacaacaagacacagcacaagtctctgcatggcttgcatggtggatgctgtcacagtgtcaaaaaaaaaaaaaacttggtgattgctattggttgtgaacttgtgatgagctttctgcatgcaatgcaactcaactgatcaagaattcaagatcgatcgtaatgtgtgtgacaatgtgaatgagaggggtgtgtgatgtggtgtggcttataacaaggtggttgcatgcatgaggagggggtgtgtacatgtcaggagaggagaggagtgagctgtaagataggttggtcttgcatacagttacagggcaccaaaccctgagaggtgagatgccattgccaaggtggaacaggctaacagctgggctttgcttcagccagcagcaagtgcatttgcatggatggatagactgcatgtgtagtggggttaacctctcctatcaaaagatctgggctggtttccttctccatttctcctccctgtttttgacaaactgagccgtaatgacagtgatttttgagttgttttgcgtgggaaggaggtgattgagtgataggctggatacaatgtgcaattctgtggtttgttgggccaggagggtcacctcgttttcacatgcgttgtgggagccggtttgttctttaattagttaatttcagtatataaccaattgactgaaaaaatctcaccgaacatgaagcatgcat
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| CDS seq | atgcatgcttcatgttcgggcccgacggcggcgccggccgcgccggcgccggcgacaccggcggcaccggcgacgccagcggcgcccgcgccggcgtcgacgaagacgacgaacatcacgggggtgctcgccaaggccgggcagtttaacacgctcatcaggctgatgcggtccaccggcgcggcggagcagatcgacaaccagctgaacagctcgcgcaacgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgctcaactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgctgatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggccggcagcaactcgccggggcagtacccgctcaacgtgacggcggaggggcagcaggtgaacatctccaccggcgtcgtcaacgccaccgtcggcaacgcgctctacaccggcgacaacctcgtcgtgtaccaggtggacaaggtgctgctcccgatggccatctacggcacgccggcgcccgcgcccgcgccgctgtcgccggcgacgaagaagaaggggaagacgccggccacgtcggtcgccgacgcgcccgaggccgccgacgcgacgccggacgcgacgaccccgtctctcgcggcggcgagggtgacggccggtgctggtgtcggggtggttcttgccttggcgagcgtctggttggggctgtga
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| Protein seq | MHASCSGPTAAPAAPAPATPAAPATPAAPAPASTKTTNITGVLAKAGQFNTLIRLMRSTGAAEQIDNQLNSSRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQAGSNSPGQYPLNVTAEGQQVNISTGVVNATVGNALYTGDNLVVYQVDKVLLPMAIYGTPAPAPAPLSPATKKKGKTPATSVADAPEAADATPDATTPSLAAARVTAGAGVGVVLALASVWLGL |
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| Function | Fasciclin-like arabinogalactan protein 11 [UniProtKB/Swiss-Prot:Q8LEJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0004120 | OsLaMu_01g0004120.01 | Chr01 | 3151191 | 3152908 | - | NAM | ||
| CDS seq | atgcatgcttcatgttcgggcccgacggcggcgccggccgcgccggcgccggcgacaccggcggcaccggcgacgccagcggcgcccgcgccggcgtcgacgaagacgacgaacatcacgggggtgctcgccaaggccgggcagtttaacacgctcatcaggctgatgcggtccaccggcgcggcggagcagatcgacaaccagctgaacagctcgcgcaacgggctgacggtgttcgcgccgacggacaacgcgttcacgtcgctcccctccggcacgctcaactcgctgtccgaccagcagaagaactcgctggtgcagtaccacgtgctgtccacgctgatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggccggcagcaactcgccggggcagtacccgctcaacgtgacggcggaggggcagcaggtgaacatctccaccggcgtcgtcaacgccaccgtcggcaacgcgctctacaccggcgacaacctcgtcgtgtaccaggtggacaaggtgctgctcccgatggccatctacggcacgccggcgcccgcgcccgcgccgctgtcgccggcgacgaagaagaaggggaagacgccggccacgtcggtcgccgacgcgcccgaggccgccgacgcgacgccggacgcgacgaccccgtctctcgcggcggcgagggtgacggccggtgctggtgtcggggtggttcttgccttggcgagcgtctggttggggctgtga
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| Protein seq | MHASCSGPTAAPAAPAPATPAAPATPAAPAPASTKTTNITGVLAKAGQFNTLIRLMRSTGAAEQIDNQLNSSRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQAGSNSPGQYPLNVTAEGQQVNISTGVVNATVGNALYTGDNLVVYQVDKVLLPMAIYGTPAPAPAPLSPATKKKGKTPATSVADAPEAADATPDATTPSLAAARVTAGAGVGVVLALASVWLGL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0004120 | OsLaMu_01g0004120.02 | Chr01 | 3151160 | 3151969 | - | IsoSeq | ||
| CDS seq | atgaggttgatgacaagtttgagcgagatctctgtattgtacgcgccttccataattttttctgttgttttttttctctctcttaattttttttgt |
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| Protein seq | MRLMTSLSEISVLYAPSIIFSVVFFLSLNFFC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.342683 | 38.881355 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0159200 | RBH | 0.0 | 0.335624 | 4.982087 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06580 | RBH | 0.0 | 0.142469 | 0.969066 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0159200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004370 | RBH | 0.450833 | 33.439148 | 26.485786 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004110 | RBH | 0.0 | 10.609391 | 1.466971 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004360 | RBH | 0.0 | 28.538912 | 24.563639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003940 | RBH | 0.0 | 0.859702 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004220 | RBH | 0.825874 | 18.858580 | 41.579163 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0055700 | RBH | 35.617588 | 8.6090595 | 0.32257 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004140 | RBH | 0.209450 | 2.665221 | 0.981718 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0056800 | RBH | 26.3439515 | 1.7106525 | 0.0616675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003970 | RBH | 0.0 | 0.257624 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004110 | RBH | 0.478742 | 1.933754 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004200 | RBH | 0.0 | 29.128584 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004190 | RBH | 0.438709 | 0.377886 | 4.883856 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004180 | RBH | 0.360455 | 5.333798 | 8.925132 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004050 | RBH | 0.708479 | 13.724887 | 15.511684 |
