Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0003720 | OGI:01009790 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:2911210-2912070 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaccgcaaatcttgcgatccacacacagcaaaagaaccaccaccgtttccccttcccgagaagaagagagcagcatccatggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggccgggaagaagcccaaggcggagaagcggctccccgccggcaagggcgagaagggctccggcgaggggaagaaggaccgcgccgggaggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctcgaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgaggccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacctccgcttaggctcttaggcttctcgttcccctttctcgccttgctgctaatggtagttgtggtaggttggaattttggatggtatggtactgtgctgtagttattctggcttttgactatcttgggttcatgtaagaaatatcctggtggatttaggacaatattgttatctggatctggtaaagtagtaattatgatggcttaatctacttgccttttacatgttctgaattattcacctgtcgcctctaatcctttggtttggtacgataatctgctcctgcgctgtctttgcctatctgaatattatgtcttaaatttcct
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| CDS seq | atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggccgggaagaagcccaaggcggagaagcggctccccgccggcaagggcgagaagggctccggcgaggggaagaaggaccgcgccgggaggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctcgaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgaggccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKDRAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Function | Histone H2B.5 [UniProtKB/Swiss-Prot:Q94JE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0003720 | OsLaMu_01g0003720.01 | Chr01 | 2911210 | 2912070 | + | NAM | ||
| CDS seq | atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggccgggaagaagcccaaggcggagaagcggctccccgccggcaagggcgagaagggctccggcgaggggaagaaggaccgcgccgggaggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctcgaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgaggccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKDRAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0003720 | OsLaMu_01g0003720.02 | Chr01 | 2911210 | 2911973 | + | IsoSeq | ||
| CDS seq | aaccgcaaatcttgcgatccacacacagcaaaagaaccaccaccgtttccccttcccgagaagaagagagcagcatccatggcgcccaaggcggagaagacgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctcgaaggccatgtcca |
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| Protein seq | NRKSCDPHTAKEPPPFPLPEKKRAASMAPKAEKTSRPTRSTSSRCSSRSTPTSASPRRPCP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.679041 | 47.350719 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0153300 | RBH | 21.718418 | 25.295584 | 31.417101 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06010 | RBH | 12.025483 | 14.190207 | 6.615673 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0153300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003950 | RBH | 7.964064 | 42.570969 | 21.447475 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003710 | RBH | 1.936204 | 23.879440 | 16.737207 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003950 | RBH | 13.247163 | 62.351051 | 35.416683 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003540 | RBH | 1.850036 | 2.777321 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003800 | RBH | 56.018520 | 89.285072 | 44.342060 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0049600 | RBH | 125.694027 | 60.329605 | 83.124153 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003760 | RBH | 3.580211 | 4.413026 | 4.856151 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0050700 | RBH | 102.8166655 | 22.947628 | 351.632416 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003500 | SBH | 0.241118 | 1.128809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003670 | RBH | 3.487418 | 86.928825 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003820 | RBH | 15.691149 | 136.289841 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003790 | RBH | 3.491761 | 4.840545 | 5.358367 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003580 | RBH | 0.0 | 14.363519 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003780 | RBH | 5.341558 | 21.518135 | 18.158487 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003650 | RBH | 11.863730 | 73.201256 | 30.959246 |
