Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0003440 | OGI:01009200 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:2750195-2751882 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtaggcgtaggatcggtggtgccgcggttgtacctctcagtttacaattgggttgtcttctttggatggttggttgttccaccgctgttcttgagttccagatggatccttcacttcttgcatcttgatttgctggccaatgtccattcttgggtttgacatgttggtttgatttgggtcttggtttggatcttgcagggctcaggtgttgtactacctgacctttgcattattgctgaagagcggacatgaggccatctatgccactgttgagcagcctctgcagttcgcacagacagacagacaaactgctgccttcatggaggtatggtttctcactttctctcttctttttttttatcggtgcactataattgtgtcttttttaggcaaattttgctacagaaaactgccatttcgtggttttagctgtaggacactacccaaactcatttttgggggacaaaacacttcataaatatggtaatttgtcaatggacaccgcaccaattaaaataataatttctaggtggagaggagagataaatcgcgtgaaatatcaaaaatgcccttggacccatatgtcagctctcctatctctctccatcccccacgttcttccgatgccccatctccctcgacgtcatgcgctcgccagtgagcctctgcaccggcgtcacctacgaccgggcatccatccagcgctggatcaactccggcgacaccacctgccccgccaccatgctcccgctgccgtccacctcaccctacgccgcctcatcgcgctctgggcatccacggcggtgccgttgtcgttgccgacgcccagcgccatcggctgttggtcccactcccgccactgcgtagtaagcctcgtcttcaagtcaacctgcgtgcttcagcggtggcatcacctccggcatcatcgcaaccaccggaaagtctcccatctcaagtatcaacggaaactaacttggcgttttaaactccgaacccccttgtttccttcctcagcactgatgaactgaggttctgactgtcatgatcaggagtgaaaacggttacggaaattcccgatcgaccgtgcgccgtttccgtttaagggggtaccgttttcgaccgtaccgtttttggctatttttaaattttattttttctaatttctttctgcatcgtattaatgtcgatattgagtagtttaaataataaatatggtcaattaccggccgatcgagcatcgtttacaaagagatgctaccaattccgaccgttttcacccctggtcatgataggcatcaagcttcaagctaggaggtatgcacgagcacggataaacttctttcgagccaaattaatcaagaggccaacacaaatggaaacaggaacaagatgatttagctttctgtctcggcaaaatcggaaagcaaataaaacagggtgaaaagcaaccggagaagcagccaaggaaatgcaaatcaatggacccgtgcccggcgctgcgtaagctcgcggcgttcctgcctgacgtcgacgagttcgacaagaacgcgcgtctcgatcgctcgatgacctcgccgcgtgccgccaggtctccacccgctggcgccgccgcctcacctacgagcccgccttcgcgccgctccactgccgccgctgaccaggccgccaccgccgtcgccgagtag
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| CDS seq | atggtaggcgtaggatcggtggtgccgcggttgtacctctcagtttacaattgggttgtcttctttggatgggctcaggtgttgtactacctgacctttgcattattgctgaagagcggacatgaggccatctatgccactgttgagcagcctctgcagttcgcacagacagacagacaaactgctgccttcatggagggtgaaaagcaaccggagaagcagccaaggaaatgcaaatcaatggacccgtgcccggcgctgcgtaagctcgcggcgttcctgcctgacgtcgacgagttcgacaagaacgcgcgtctcgatcgctcgatgacctcgccgcgtgccgccaggtctccacccgctggcgccgccgcctcacctacgagcccgccttcgcgccgctccactgccgccgctgaccaggccgccaccgccgtcgccgagtag
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| Protein seq | MVGVGSVVPRLYLSVYNWVVFFGWAQVLYYLTFALLLKSGHEAIYATVEQPLQFAQTDRQTAAFMEGEKQPEKQPRKCKSMDPCPALRKLAAFLPDVDEFDKNARLDRSMTSPRAARSPPAGAAASPTSPPSRRSTAAADQAATAVAE |
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| Function | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B [UniProtKB/Swiss-Prot:Q5ZEJ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0003440 | OsLaMu_01g0003440.01 | Chr01 | 2750195 | 2751882 | + | NAM | ||
| CDS seq | atggtaggcgtaggatcggtggtgccgcggttgtacctctcagtttacaattgggttgtcttctttggatgggctcaggtgttgtactacctgacctttgcattattgctgaagagcggacatgaggccatctatgccactgttgagcagcctctgcagttcgcacagacagacagacaaactgctgccttcatggagggtgaaaagcaaccggagaagcagccaaggaaatgcaaatcaatggacccgtgcccggcgctgcgtaagctcgcggcgttcctgcctgacgtcgacgagttcgacaagaacgcgcgtctcgatcgctcgatgacctcgccgcgtgccgccaggtctccacccgctggcgccgccgcctcacctacgagcccgccttcgcgccgctccactgccgccgctgaccaggccgccaccgccgtcgccgagtag
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| Protein seq | MVGVGSVVPRLYLSVYNWVVFFGWAQVLYYLTFALLLKSGHEAIYATVEQPLQFAQTDRQTAAFMEGEKQPEKQPRKCKSMDPCPALRKLAAFLPDVDEFDKNARLDRSMTSPRAARSPPAGAAASPTSPPSRRSTAAADQAATAVAE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0150200 | SBH | 1.316442 | 0.285449 | 3.373357 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05760 | SBH | 0.0 | 0.0 | 0.522395 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0150200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003660 | RBH | 0.000000 | 2.846021 | 2.017391 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003470 | SBH | 0.121827 | 2.770417 | 1.623763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003650 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003540 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0047100 | RBH | 1.2539405 | 2.5254685 | 2.3937645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003470 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0048200 | RBH | 1.5368595 | 2.001956 | 4.238825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003250 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003530 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0005140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003400 | SBH | 0.0 | 7.242541 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003600 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003450 | RBH | 0.000000 | 0.0 | 0.0 |
