Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0000780 | OGI:01001750 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:578197-582184 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaggaaatatagagtggaatatgcaggttcagtcaccaccaacagaggcaattcattggttccttcaagggctagtactagtaaatcttctgtctgtcagattttgtagaatcaggcacgctcagtgcaatcaatatacacttttcttagtgggacgcatgatatacattactcctagttgacagagatggccacaaaaaagaagaaaacaaaatcagatgaaacaaatccaatgcaacaataccctagctaattagaggagtattagactatgattacaagggcctcgaaccagaggcatcaacatctctactacgactatcccagctagattgggtgaaatcagttgtgaaatcttggctaccaaaagccatccgctgaaacagcctgatttctgccgtgtttgccacattgaacatttcgctcttaccaggctgaataccattgcttagatcgacgtcagctaagctatcaagaacacgcaccacctgaaaggagagatgtgattaaaatgaacaggttcaggttcaatcagatgtgatgagattatgttcggtcctatacctggctcatccggggtctcctagatgctgaatgtcgaatgcaagctgccgcagcttcgatcattcgaaacatttcagcttcattgaagttcttgtccagcctggagtcaatcagctccccaacgttgccagtctcaattgcttctgtgagcaatggcctagcctgcaagtgattgtgtaagttacacaaggatcccctctttagactgatttacaacacgatttcagcagatgttcatagttgaccagtccacattttatatcagaacgcttttcaaccagtggctaactatatggattgactcctaataaaaacacagttaaaaaatgtgaactgcagagatcaacagctcaatgtgaattcctacgttattagaatctttgaaatgagtcaagttggctattcaaatacagttgataaaatatatttctccatttgctttcatttgatcatacaggggcaaaaatcttattgaacatactaatttcaatatactcatcttccattatctAaaaaaaaatgatttctagttactgatatagcttacccactcaacaaggctctcatcacccaatggttttgatgcgtcaacaggctttctaccggtaataagctctaagagaacaacgccaaaagagaatacatcagatctctcagtcaacttgccactcgaagcatactccggagccagataactgcataacaaataatcattagatcatatgaaaatgtacgatgttctcttgtgccctcagtaaggcaggcagtaatttacttacccaaaagttcccatcacccgtgtagttacatgcgtgactgcatccatagctagtcttgcaaggccaaaatcagcaacctaacacacgaatagcagccaattagtaacaatggtcacattataacgcctctcccaatttatctaaataatgttgttacctgggcttcaaagttattatccagtaaaatgttggaggatttaatatctcggtggataattcggggatggcctgcaaaagggaaataaatgtaatgaaaatgaagtgcaaatgatcacattaataaggtacagaaccagaaagaatattacaatcttcatgaagatatgctatccctcgagctgagccagctgcaattttaaccctagctgaccactccaaaaccggcattccacgtcctacaagggcagatcaattaaacagttttcagacagaactagaactatgcagagctctcatgcggcaatatgctgaaggttaccaccataccatgaagatgatggtgcagtgtgtcattgggcacaaaatcatagacaagcaacctctggtcctccgaaatgcaatacccaacaagagaaactagatggcggtggtgcacacgactgattatctccacctcagcctggaactcacgttccccctgcccaccaccacctttcagtttcttaacggcaacctctcttccatcagccaagcaacccttgtaaacagacccaaacccaccttcccctagcaggttcttcgctgcaaaaccatttgtgatctggtgcaattcctcgtaagtgaagaatcgacaattgcccatgctgaactctgacattgtttctttgtaatcaggactgccagcactgtagttagttttacctgaataccctgggcaaaaaatgagttgtacttgctcagttcatcacctactagtaatacaacttaaactgattttaattttccaggtgcgcgatttctgaaaatgcatttcatcagattacctaacacttgtggagacgaagcaggcgatggcatcacaaatcctgcatggtaaccggttgctctcctccgtttcttcttgtaccaaaatgcagctcctaccaagctaagcacaagaatagcgacgactacaccgatgcccgcctttgcacttgagctcattccaccatcgctcgacgagacgctgccgtcctgcgtgttgggacttaatgacttgttggatcgatcagctgccgtggctggagccgtgcctggcgatggagggccagagactggtgcagatggcgtcaccacaggagtaccagagcctggtgctgatggcgtcgcctctggcgacgaaggtttattgggtgtagggatgattggatctccagcaattggtgatggactagctggagaaggcttggtaggacttccagaaggcgatggcgccatcggtggagcccatggcgttctcggcgatctccggtgcggcggtggaggtgactgcactaccggcggcgtgtctgagcgagccggcggattaggcggcggcaaatcagccggagacgatggaggtggtgatgcagccactgggggttgctgcacaggcgacggctttggaggggtagtagcaggtgtaggtggcaccggcactgaagccggtggcgacggcggcggcaatgtggctgacggggttggtggtggagacgcaacgggtacaggcggcggtggcacggtggccggcggtggcactgcgaccggaggagctggtggcggagagggcggcggggaatcgggctgtgggggtggcgtggcggcggagggaaggggaggggacgcggccgggggagtgatggaggggtcggccggcgtggcattgggctgcgtcgcgggtgttggggtcgcggtggaaggcgcggcggcggcggtggcgggagttgccgtgcccggggagggagacggtgaggacgccattggaggctagctagtactagtagccactactactagagtgtagctgcagctgctactagtatcttcttcttggaaatggaggggacgatctttccatgcaccggaattcagagggaattcaggctttctgcgagaaaattcctcagatttgcagaggaagcaagcaaaattttcgcttcttttccaccacctttgctttctttctctccgcagagcgcaacgaagcgaaggtgaagtagcaacaaacctcacctcgaccaccggaagaagaagactgaaatcagcaagaacagcatcgccttcctcctgcctgagcaagcagcaaacggcgaaacaaaaaaacgagccttttcttgcaggaagagaagcaagatcccaccacctttgtcaccgattaagcagatggaaggcaaaattctcaacaaaaggaagaattgtggaagaagcagcacaagaactcagcaaggatgggagctttcctcagatccggcagtaaagcggtggcattgaaggcaagacaaaggtaactgcagaaacaacaagaagaaaaaagagagatttttttgctctttgctctctctatctatctttctcctccgctggggaacccgtgaccgcgtagagaagtctctctcccactacacaatggatcaatggattccactcgagaaagagagagagattaggagtgtagtagtacatgctag
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| CDS seq | atggcgtcctcaccgtctccctccccgggcacggcaactcccgccaccgccgccgccgcgccttccaccgcgaccccaacacccgcgacgcagcccaatgccacgccggccgacccctccatcactcccccggccgcgtcccctccccttccctccgccgccacgccacccccacagcccgattccccgccgccctctccgccaccagctcctccggtcgcagtgccaccgccggccaccgtgccaccgccgcctgtacccgttgcgtctccaccaccaaccccgtcagccacattgccgccgccgtcgccaccggcttcagtgccggtgccacctacacctgctactacccctccaaagccgtcgcctgtgcagcaacccccagtggctgcatcaccacctccatcgtctccggctgatttgccgccgcctaatccgccggctcgctcagacacgccgccggtagtgcagtcacctccaccgccgcaccggagatcgccgagaacgccatgggctccaccgatggcgccatcgccttctggaagtcctaccaagccttctccagctagtccatcaccaattgctggagatccaatcatccctacacccaataaaccttcgtcgccagaggcgacgccatcagcaccaggctctggtactcctgtggtgacgccatctgcaccagtctctggccctccatcgccaggcacggctccagccacggcagctgatcgatccaacaagtcattaagtcccaacacgcaggacggcagcgtctcgtcgagcgatggtggaatgagctcaagtgcaaaggcgggcatcggtgtagtcgtcgctattcttgtgcttagcttggtaggagctgcattttggtacaagaagaaacggaggagagcaaccggttaccatgcaggatttgtgatgccatcgcctgcttcgtctccacaagtgttagggtattcaggtaaaactaactacagtgctggcagtcctgattacaaagaaacaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccagatcacaaatggttttgcagcgaagaacctgctaggggaaggtgggtttgggtctgtttacaagggttgcttggctgatggaagagaggttgccgttaagaaactgaaaggtggtggtgggcagggggaacgtgagttccaggctgaggtggagataatcagtcgtgtgcaccaccgccatctagtttctcttgttgggtattgcatttcggaggaccagaggttgcttgtctatgattttgtgcccaatgacacactgcaccatcatcttcatggacgtggaatgccggttttggagtggtcagctagggttaaaattgcagctggctcagctcgagggatagcatatcttcatgaagattgccatccccgaattatccaccgagatattaaatcctccaacattttactggataataactttgaagcccaggttgctgattttggccttgcaagactagctatggatgcagtcacgcatgtaactacacgggtgatgggaacttttggttatctggctccggagtatgcttcgagtggcaagttgactgagagatctgatgtattctcttttggcgttgttctcttagagcttattaccggtagaaagcctgttgacgcatcaaaaccattgggtgatgagagccttgttgagtgggctaggccattgctcacagaagcaattgagactggcaacgttggggagctgattgactccaggctggacaagaacttcaatgaagctgaaatgtttcgaatgatcgaagctgcggcagcttgcattcgacattcagcatctaggagaccccggatgagccaggtggtgcgtgttcttgatagcttagctgacgtcgatctaagcaatggtattcagcctggtaagagcgaaatgttcaatgtggcaaacacggcagaaatcaggctgtttcagcggatggcttttggtagccaagatttcacaactgatttcacccaatctagctgggatagtcgtagtagagatgttgatgcctctggttcgaggcccttgtaa
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| Protein seq | MASSPSPSPGTATPATAAAAPSTATPTPATQPNATPADPSITPPAASPPLPSAATPPPQPDSPPPSPPPAPPVAVPPPATVPPPPVPVASPPPTPSATLPPPSPPASVPVPPTPATTPPKPSPVQQPPVAASPPPSSPADLPPPNPPARSDTPPVVQSPPPPHRRSPRTPWAPPMAPSPSGSPTKPSPASPSPIAGDPIIPTPNKPSSPEATPSAPGSGTPVVTPSAPVSGPPSPGTAPATAADRSNKSLSPNTQDGSVSSSDGGMSSSAKAGIGVVVAILVLSLVGAAFWYKKKRRRATGYHAGFVMPSPASSPQVLGYSGKTNYSAGSPDYKETMSEFSMGNCRFFTYEELHQITNGFAAKNLLGEGGFGSVYKGCLADGREVAVKKLKGGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISEDQRLLVYDFVPNDTLHHHLHGRGMPVLEWSARVKIAAGSARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVADFGLARLAMDAVTHVTTRVMGTFGYLAPEYASSGKLTERSDVFSFGVVLLELITGRKPVDASKPLGDESLVEWARPLLTEAIETGNVGELIDSRLDKNFNEAEMFRMIEAAAACIRHSASRRPRMSQVVRVLDSLADVDLSNGIQPGKSEMFNVANTAEIRLFQRMAFGSQDFTTDFTQSSWDSRSRDVDASGSRPL |
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| Function | Proline-rich receptor-like protein kinase PERK8 [UniProtKB/Swiss-Prot:Q9FFW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0000780 | OsLaMu_01g0000780.01 | Chr01 | 578197 | 582184 | - | NAM | ||
| CDS seq | atggcgtcctcaccgtctccctccccgggcacggcaactcccgccaccgccgccgccgcgccttccaccgcgaccccaacacccgcgacgcagcccaatgccacgccggccgacccctccatcactcccccggccgcgtcccctccccttccctccgccgccacgccacccccacagcccgattccccgccgccctctccgccaccagctcctccggtcgcagtgccaccgccggccaccgtgccaccgccgcctgtacccgttgcgtctccaccaccaaccccgtcagccacattgccgccgccgtcgccaccggcttcagtgccggtgccacctacacctgctactacccctccaaagccgtcgcctgtgcagcaacccccagtggctgcatcaccacctccatcgtctccggctgatttgccgccgcctaatccgccggctcgctcagacacgccgccggtagtgcagtcacctccaccgccgcaccggagatcgccgagaacgccatgggctccaccgatggcgccatcgccttctggaagtcctaccaagccttctccagctagtccatcaccaattgctggagatccaatcatccctacacccaataaaccttcgtcgccagaggcgacgccatcagcaccaggctctggtactcctgtggtgacgccatctgcaccagtctctggccctccatcgccaggcacggctccagccacggcagctgatcgatccaacaagtcattaagtcccaacacgcaggacggcagcgtctcgtcgagcgatggtggaatgagctcaagtgcaaaggcgggcatcggtgtagtcgtcgctattcttgtgcttagcttggtaggagctgcattttggtacaagaagaaacggaggagagcaaccggttaccatgcaggatttgtgatgccatcgcctgcttcgtctccacaagtgttagggtattcaggtaaaactaactacagtgctggcagtcctgattacaaagaaacaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccagatcacaaatggttttgcagcgaagaacctgctaggggaaggtgggtttgggtctgtttacaagggttgcttggctgatggaagagaggttgccgttaagaaactgaaaggtggtggtgggcagggggaacgtgagttccaggctgaggtggagataatcagtcgtgtgcaccaccgccatctagtttctcttgttgggtattgcatttcggaggaccagaggttgcttgtctatgattttgtgcccaatgacacactgcaccatcatcttcatggacgtggaatgccggttttggagtggtcagctagggttaaaattgcagctggctcagctcgagggatagcatatcttcatgaagattgccatccccgaattatccaccgagatattaaatcctccaacattttactggataataactttgaagcccaggttgctgattttggccttgcaagactagctatggatgcagtcacgcatgtaactacacgggtgatgggaacttttggttatctggctccggagtatgcttcgagtggcaagttgactgagagatctgatgtattctcttttggcgttgttctcttagagcttattaccggtagaaagcctgttgacgcatcaaaaccattgggtgatgagagccttgttgagtgggctaggccattgctcacagaagcaattgagactggcaacgttggggagctgattgactccaggctggacaagaacttcaatgaagctgaaatgtttcgaatgatcgaagctgcggcagcttgcattcgacattcagcatctaggagaccccggatgagccaggtggtgcgtgttcttgatagcttagctgacgtcgatctaagcaatggtattcagcctggtaagagcgaaatgttcaatgtggcaaacacggcagaaatcaggctgtttcagcggatggcttttggtagccaagatttcacaactgatttcacccaatctagctgggatagtcgtagtagagatgttgatgcctctggttcgaggcccttgtaa
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| Protein seq | MASSPSPSPGTATPATAAAAPSTATPTPATQPNATPADPSITPPAASPPLPSAATPPPQPDSPPPSPPPAPPVAVPPPATVPPPPVPVASPPPTPSATLPPPSPPASVPVPPTPATTPPKPSPVQQPPVAASPPPSSPADLPPPNPPARSDTPPVVQSPPPPHRRSPRTPWAPPMAPSPSGSPTKPSPASPSPIAGDPIIPTPNKPSSPEATPSAPGSGTPVVTPSAPVSGPPSPGTAPATAADRSNKSLSPNTQDGSVSSSDGGMSSSAKAGIGVVVAILVLSLVGAAFWYKKKRRRATGYHAGFVMPSPASSPQVLGYSGKTNYSAGSPDYKETMSEFSMGNCRFFTYEELHQITNGFAAKNLLGEGGFGSVYKGCLADGREVAVKKLKGGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISEDQRLLVYDFVPNDTLHHHLHGRGMPVLEWSARVKIAAGSARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVADFGLARLAMDAVTHVTTRVMGTFGYLAPEYASSGKLTERSDVFSFGVVLLELITGRKPVDASKPLGDESLVEWARPLLTEAIETGNVGELIDSRLDKNFNEAEMFRMIEAAAACIRHSASRRPRMSQVVRVLDSLADVDLSNGIQPGKSEMFNVANTAEIRLFQRMAFGSQDFTTDFTQSSWDSRSRDVDASGSRPL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0000780 | OsLaMu_01g0000780.02 | Chr01 | 579123 | 582184 | - | NAM | ||
| CDS seq | atggcgtcctcaccgtctccctccccgggcacggcaactcccgccaccgccgccgccgcgccttccaccgcgaccccaacacccgcgacgcagcccaatgccacgccggccgacccctccatcactcccccggccgcgtcccctccccttccctccgccgccacgccacccccacagcccgattccccgccgccctctccgccaccagctcctccggtcgcagtgccaccgccggccaccgtgccaccgccgcctgtacccgttgcgtctccaccaccaaccccgtcagccacattgccgccgccgtcgccaccggcttcagtgccggtgccacctacacctgctactacccctccaaagccgtcgcctgtgcagcaacccccagtggctgcatcaccacctccatcgtctccggctgatttgccgccgcctaatccgccggctcgctcagacacgccgccggtagtgcagtcacctccaccgccgcaccggagatcgccgagaacgccatgggctccaccgatggcgccatcgccttctggaagtcctaccaagccttctccagctagtccatcaccaattgctggagatccaatcatccctacacccaataaaccttcgtcgccagaggcgacgccatcagcaccaggctctggtactcctgtggtgacgccatctgcaccagtctctggccctccatcgccaggcacggctccagccacggcagctgatcgatccaacaagtcattaagtcccaacacgcaggacggcagcgtctcgtcgagcgatggtggaatgagctcaagtgcaaaggcgggcatcggtgtagtcgtcgctattcttgtgcttagcttggtaggagctgcattttggtacaagaagaaacggaggagagcaaccggttaccatgcaggatttgtgatgccatcgcctgcttcgtctccacaagtgttagggtattcaggtaaaactaactacagtgctggcagtcctgattacaaagaaacaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccagatcacaaatggttttgcagcgaagaacctgctaggggaaggtgggtttgggtctgtttacaagggttgcttggctgatggaagagaggttgccgttaagaaactgaaaggtggtggtgggcagggggaacgtgagttccaggctgaggtggagataatcagtcgtgtgcaccaccgccatctagtttctcttgttgggtattgcatttcggaggaccagaggttgcttgtctatgattttgtgcccaatgacacactgcaccatcatcttcatggacgtggaatgccggttttggagtggtcagctagggttaaaattgcagctggctcagctcgagggatagcatatcttcatgaagattgccatccccgaattatccaccgagatattaaatcctccaacattttactggataataactttgaagcccaggttgctgattttggccttgcaagactagctatggatgcagtcacgcatgtaactacacgggtgatgggaacttttggttatctggctccggagtatgcttcgagtggcaagttgactgagagatctgatgtattctcttttggcgttgttctcttagagcttattaccggtagaaagcctgttgacgcatcaaaaccattgggtgatgagagccttgttgagtgggtaagctatatcagtaactag
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| Protein seq | MASSPSPSPGTATPATAAAAPSTATPTPATQPNATPADPSITPPAASPPLPSAATPPPQPDSPPPSPPPAPPVAVPPPATVPPPPVPVASPPPTPSATLPPPSPPASVPVPPTPATTPPKPSPVQQPPVAASPPPSSPADLPPPNPPARSDTPPVVQSPPPPHRRSPRTPWAPPMAPSPSGSPTKPSPASPSPIAGDPIIPTPNKPSSPEATPSAPGSGTPVVTPSAPVSGPPSPGTAPATAADRSNKSLSPNTQDGSVSSSDGGMSSSAKAGIGVVVAILVLSLVGAAFWYKKKRRRATGYHAGFVMPSPASSPQVLGYSGKTNYSAGSPDYKETMSEFSMGNCRFFTYEELHQITNGFAAKNLLGEGGFGSVYKGCLADGREVAVKKLKGGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISEDQRLLVYDFVPNDTLHHHLHGRGMPVLEWSARVKIAAGSARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVADFGLARLAMDAVTHVTTRVMGTFGYLAPEYASSGKLTERSDVFSFGVVLLELITGRKPVDASKPLGDESLVEWVSYISN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 3.775439 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0110500 | RBH | 0.836465 | 0.648828 | 2.792046 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02040 | RBH | 0.640960 | 0.543000 | 0.818787 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0110500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000810 | RBH | 0.123883 | 1.748837 | 4.515666 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000800 | RBH | 0.144346 | 1.068284 | 2.320899 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000800 | RBH | 0.000000 | 3.528588 | 3.803072 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000810 | RBH | 0.024931 | 0.297449 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000790 | RBH | 2.407057 | 12.712504 | 11.933784 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0008900 | RBH | 3.2895905 | 9.9528915 | 7.0278655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000780 | RBH | 0.0 | 0.353960 | 0.808705 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0010600 | RBH | 3.365649 | 3.053862 | 10.953434 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0000800 | RBH | 0.037424 | 0.121590 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000830 | RBH | 0.0 | 9.889298 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000800 | RBH | 0.785769 | 7.364565 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000800 | RBH | 0.179497 | 0.232346 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000080 | RBH | 0.226140 | 4.896055 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000790 | RBH | 0.035384 | 4.469260 | 2.169252 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000750 | RBH | 0.308692 | 6.400002 | 5.970565 |
