Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0019900 | OGI:12065460 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:24452035-24457600 | ||||||||
| Gene Symbol | BZIP88, OsbZIP88 | ||||||||||
| DNA seq | aaagtcaccactcaccaccaccattgccgttgctcagttttctctgaaaaaaatctactcctctctgaaaaaggaggcaactttttttctttgcgagaatgaagcgcggcggcgccggtgtcggcggcggcggcggcggcggcgatccgggcgcctacgcggcggtgctgaagacgaagctcgacctgtactgcgcggccgtggctaaatcgatggtaaatctcgtaccttttttttttaatccaaagatcgcatctttatttttgttcgattcgctgaggcgcagttcgattttgaggccatttgggagttcttgaatcccccatttaggaggattttctgctgcgattttcaagtttaagaaattatgaagaaagaaaaaaaattaggaaattgctgctccatttgaggattctatgctgccataagctaatgacactttcttagagttactattgtttatttttcgcgttcataggacctacgttaccccgatacgttgatacggatacggatacgtgatacggcgataccgggatacaccatcttcccaaaaacatggatacggggatacgcgaatatatatatatataataattaaaaaatacaaaaaaaaattgagtgtgagatatggactgaaaaaataggaagcaaacagcatcaaaccaccaatgcaccaatcatcatatatatgatatctcagtacgacagattcacaggctcacagcatctcaccaagtcaccatttattgaagaggcatgcataaataagtgcaagactacacagtagatgaaatcatgaaaataacatagttcttcaaatagatggtagacattagacaacattgttcacatagtagatgatgcaggatttacctcaagtcctcaacgtcgtcttcgtcggaggtgatgcaggaatgatcagaggcagcggcgtgatgcaggattgatcagaggcagcggcgcgacgcctcgtggaggagtctggagctactggaggagagtgcagaggagggggcacggagaaggctgtaggcggcggcgcggcgcggtgccggtcgctggcggtgggccggcgacgaggcggcgcagcgacgcagcaacggcgtggtcggggcggccgggcggcactgcgatggggattggtttttgcgagcggcggcgcgtgtggagggggagaacgggagatgcgttttgttctgtgtggtttcgggctcccccgtatcagttacgtatcccatcgtatcggaggagtatcggtatttttttaattatctgaaaaagagaaaaatgagggatacgtacgggatacgtatccggccgtatcccgcacgtatccgtatccggacgcgtatcagatactgatacgagggtcagctgccgtatcggggtaacgtagcataggaccatttggttcatggccaactgcaccataatagacaggcaaagtatggattatgaatagaaaaagaagaagaagaagagagagtatggattgtgaaaagagaaaatattctggctaatgaatgggtggcatgagtaaccaattctattaatgaaactaatggaaattgtaaatccaactaaatgtctgattaagacggtatctttcagtcacatgtctgaatagtcagacaaccttgggatcaaatcttaaaataagactcaataaaatgtctaaagtactacggcaattcgttggtttgcttatgattttacatgaaaatgataccatgataccaagtagcaccatggcttttctgcctgaagacaaggggggctaggggagatgaactctggatgcttgatctttgatgaatcttgatgtactgatacgtaggatcgttgatttggtatggtttaacttgtggcatggagggaagctgacttgtcaacgggagcacatgaacagtcttgaagatattctctcatggacaagtggatcacaaaggactggatgaatgtgacgttttaagggttgaaccagtaggattttcctttctttttcaactttttagtgttgtgaaaaagtttggtcatattccttttttctgaaagagacaggtaaactaataatatctgaagtctaatgcataaagaggcatggtttcttcataagctctgcagtttcgagcatcagacagggttctgtgttttcacaacccgttttagggattattggtccacggcaataatcggacagaaaaagtctaaatttaagtttaaaattcaaagtttgaattcgaattcatggccttccagctggtaattactccctaactagcccctgactctggaccgatttctggtttttggaatccttgtgccagatatgttgtccactatttcattccacttctctcattatagttttgatgccccgttgaccagttgtttcatttgaaaacttaagcagtatctattaaaagagactcagcggttcagctacaattgattcctttcctatgatcatttatttgttagcgtaaattctaacctgaggttttcaaatgagtgtttcattgttctatggtttggggtcttttcactacccatagaaacctcaacactttgttctctgttactagttgccacaatttcaaatcactggtagttctggagctatttctctaggagtaagctacttgctagttgaggtcttgagggccacttttcacaaaatatcttttcttttaaatccttgcttctttttttttagttacacaatcctcaattgtggattcagttaaaaacaacacatgtttgttttcttcagttttttttcagtacataacagaaaaccttggacaatattgtaggttcttcctcagtagttctggagaattatgggctataccttttgatgtattacatacgagcagttttctggagtttatagcggtagaagtcccatgtgctggctgtgacaagccccttgatcatttgttgcttgtgatatatagatatttatctacatccatttcaggaagctaaactgcaagaatcttctttgggctacctcaatttacaagcctcagacacttcacaattggtttctcaagattcttttaatggtatgtatgaacttccatagtcgcatatatatcaatctatggcaacttgggaaaaaaaccgtgccacagttatatcctagaggaagttgtctgaaagaagtgttttcttagattggccaaatatcatctgccttgacagctttataagaaagctaacagaaacagagttcagaagaatctggtttcatcaacagtttcagtaaataggttaactaatgcccaaatgataaaaaaggggtacatgtaaaattttggtgccaccaatataaagatgggagatatgtaccctgatcctgcttctgtgacgtggaacaccgtcatcatatattggatatgcaaccttgttgccaccaatatgattcctggcaatgcgcactgcagatgaatttctgcaccatctgatgggtgcaggggaacctacaattgacgctttggaacgcgtttaggtggttttgcagcaattgaaatgtcactatcatatactatcgtcttttactcttttggtctctttacttctttactataggctatggatcaaccagagtaacaaactcaaatgccatacatgaagatgacgatcaaggtaaaccagctaatagtggtacatcaaaggaacagtcagatgatgatggcgatcttgaggaagatacggaccccgttaatgcaaagcggacaaggaggtattggattagattcctccactacttagtttgttaaagatacagtcataccgtgaaataaatcttgatatcagtttcttatttcaagcatataacatgttctagaatttatatcgatgacattgcagtgttggaaaactattgcagccttttacgtgctgatgaatctcttggtgttatgttgtgattagaatgctgtcaaatcgggaatcagccaggaggtcaagaaaaaggaagcaagctcacctaaacgatctagaatcacaggtctcaaatcatgaaccatgaatgcttaagtatagtactaactgagaaggcaatgctaattactacactatcatctaggtttcccagttaagatctgagaatgcatctctgcaaaagcgcttgtctgacatgactcagaaatataagcaatctaccacagaatatggcaatcttcaagatgacatgaacgctatgaggagaaaggtattttctttttgttgttgtgaccgtttgattacatccagcacttcttttattcccattgaagggctatgaatctgttgattgtagtccagaagctgtccatttacatagtattctttctataattaaaatgtttcgatctaatgcagcccatttacatagcattataatattttgatttaattttctgtttcttctgaggatgcaggtacgtattattctctctatgtggaataggaagagactagtgtattttaatatttttcttgttttagttttggttttaagaataacaatgttctcttacaggtgtggcgttgtaaaaaaagaaacaaaacattttaaaagcgcttgtaccatgttgtgatgctccaagagtgtgtcccattaaatctatggtttgctccttatggaagggcttttttctctgagaagaacgaaaaccttcatatgaggagtccaaacagggcacaatcatacaaacatttgtttaatgcttgtatgtgagtatatgcacaactctgtatttatgtcttgcatggtaaggtgtttttttttttcaaaacattcagtacagtgatgactgctgctgcaaagtaggctttattggtagtctcaaattctcaatcctgttttcaacaacactacacacaaagagatatcaaaaggaacatgtatacataagaacctattgttctgtccctttatatataaagttgaatttgttttcccaaaaacatcagctcgggtttaacttaaattctgtaaaatgtttactgtaatagatctgttgtggagctacaactgagacactgatttatactattgttcttctcaaaataatttatattaatgtagcttgtggttgctaataatcttatggtttcatatcgtttacgttgtaacgaagtgctttgtgttcaggtgaatatagctgaagaagcggtgaggagagtaactggaataggacttcaattgttcactacatctgaaatgcctgcaagcagcatgcccgtttcttcaggtgtatcagacgcagcttctgctgctgctgctgctgctctcgtcgaagacgactggacaaactgtagcctcccagatgaagcaattcctgtgccaagtgcagcaatggccttgaggtcaccgtccgtgcggcgtgtcgcaagcttggagaacctgcagaagagaatccatgctggagatgtgacacattttgaggcagcatcagccttgtcattgcctgaagctactgcctgtgataataagtagtaacagcaggtatactgatactgctctaaaaccagcttctggtgctctggcgtattaaggtttttggtaatg
More
|
||||||||||
| CDS seq | atgaagcgcggcggcgccggtgtcggcggcggcggcggcggcggcgatccgggcgcctacgcggcggtgctgaagacgaagctcgacctgtactgcgcggccgtggctaaatcgatggaagctaaactgcaagaatcttctttgggctacctcaatttacaagcctcagacacttcacaattggtttctcaagattcttttaatggctatggatcaaccagagtaacaaactcaaatgccatacatgaagatgacgatcaaggtaaaccagctaatagtggtacatcaaaggaacagtcagatgatgatggcgatcttgaggaagatacggaccccgttaatgcaaagcggacaaggagaatgctgtcaaatcgggaatcagccaggaggtcaagaaaaaggaagcaagctcacctaaacgatctagaatcacaggtttcccagttaagatctgagaatgcatctctgcaaaagcgcttgtctgacatgactcagaaatataagcaatctaccacagaatatggcaatcttcaagatgacatgaacgctatgaggagaaaggtgaatatagctgaagaagcggtgaggagagtaactggaataggacttcaattgttcactacatctgaaatgcctgcaagcagcatgcccgtttcttcaggtgtatcagacgcagcttctgctgctgctgctgctgctctcgtcgaagacgactggacaaactgtagcctcccagatgaagcaattcctgtgccaagtgcagcaatggccttgaggtcaccgtccgtgcggcgtgtcgcaagcttggagaacctgcagaagagaatccatgctggagatgtgacacattttgaggcagcatcagccttgtcattgcctgaagctactgcctgtgataataagtag
More
|
||||||||||
| Protein seq | MKRGGAGVGGGGGGGDPGAYAAVLKTKLDLYCAAVAKSMEAKLQESSLGYLNLQASDTSQLVSQDSFNGYGSTRVTNSNAIHEDDDQGKPANSGTSKEQSDDDGDLEEDTDPVNAKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQSTTEYGNLQDDMNAMRRKVNIAEEAVRRVTGIGLQLFTTSEMPASSMPVSSGVSDAASAAAAAALVEDDWTNCSLPDEAIPVPSAAMALRSPSVRRVASLENLQKRIHAGDVTHFEAASALSLPEATACDNK |
||||||||||
| Function | Light-inducible protein CPRF2 [UniProtKB/Swiss-Prot:Q99090] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0019900 | OsKeNa_12g0019900.01 | Chr12 | 24452045 | 24457600 | + | NAM | ||
| CDS seq | atgaagcgcggcggcgccggtgtcggcggcggcggcggcggcggcgatccgggcgcctacgcggcggtgctgaagacgaagctcgacctgtactgcgcggccgtggctaaatcgatggaagctaaactgcaagaatcttctttgggctacctcaatttacaagcctcagacacttcacaattggtttctcaagattcttttaatggctatggatcaaccagagtaacaaactcaaatgccatacatgaagatgacgatcaaggtaaaccagctaatagtggtacatcaaaggaacagtcagatgatgatggcgatcttgaggaagatacggaccccgttaatgcaaagcggacaaggagaatgctgtcaaatcgggaatcagccaggaggtcaagaaaaaggaagcaagctcacctaaacgatctagaatcacaggtttcccagttaagatctgagaatgcatctctgcaaaagcgcttgtctgacatgactcagaaatataagcaatctaccacagaatatggcaatcttcaagatgacatgaacgctatgaggagaaaggtgaatatagctgaagaagcggtgaggagagtaactggaataggacttcaattgttcactacatctgaaatgcctgcaagcagcatgcccgtttcttcaggtgtatcagacgcagcttctgctgctgctgctgctgctctcgtcgaagacgactggacaaactgtagcctcccagatgaagcaattcctgtgccaagtgcagcaatggccttgaggtcaccgtccgtgcggcgtgtcgcaagcttggagaacctgcagaagagaatccatgctggagatgtgacacattttgaggcagcatcagccttgtcattgcctgaagctactgcctgtgataataagtag
More
|
|||||||
| Protein seq | MKRGGAGVGGGGGGGDPGAYAAVLKTKLDLYCAAVAKSMEAKLQESSLGYLNLQASDTSQLVSQDSFNGYGSTRVTNSNAIHEDDDQGKPANSGTSKEQSDDDGDLEEDTDPVNAKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQSTTEYGNLQDDMNAMRRKVNIAEEAVRRVTGIGLQLFTTSEMPASSMPVSSGVSDAASAAAAAALVEDDWTNCSLPDEAIPVPSAAMALRSPSVRRVASLENLQKRIHAGDVTHFEAASALSLPEATACDNK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0019900 | OsKeNa_12g0019900.02 | Chr12 | 24452035 | 24453499 | + | IsoSeq | ||
| CDS seq | aaagtcaccactcaccaccaccattgccgttgctcagttttctctgaaaaaaatctactcctctctgaaaaaggaggcaactttttttctttgcga |
|||||||
| Protein seq | KVTTHHHHCRCSVFSEKNLLLSEKGGNFFSLR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.354776 | 0.000000 | 8.285604 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0601800 | RBH | 1.465263 | 1.374330 | 0.962354 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g40920 | RBH | 1.197207 | 1.073395 | 0.195433 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0601800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019800 | RBH | 1.667594 | 0.0 | 9.338958 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020230 | RBH | 7.535714 | 0.000000 | 19.509193 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019540 | RBH | 0.946034 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019140 | RBH | 19.449442 | 6.537545 | 65.261261 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0338700 | RBH | 12.0885025 | 2.6535565 | 0.9585735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019010 | RBH | 1.264673 | 0.000000 | 4.104237 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0369400 | RBH | 10.243851 | 3.510723 | 2.9458605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019260 | RBH | 2.199666 | 0.083055 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019490 | RBH | 4.510750 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019400 | RBH | 40.871750 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019450 | RBH | 4.183711 | 0.0 | 6.259835 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019620 | RBH | 1.960888 | 2.500755 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019310 | RBH | 6.544034 | 2.293937 | 15.236809 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019030 | RBH | 24.031435 | 7.458582 | 24.179873 |
