Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0013520 | OGI:12047690 | 7/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:17704846-17709150 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacagaaaatcttgtatagcagcaagtccagggtcacttacatcacgtttccataccaaatcctccatatacttatttgatccagtaagatgtgctagaatagtttcagtacaatcaagggcatgaacatgccatccccacacatcaaccatgcgatgaatctttgtgacttgagatcgtgcaagaatctgtgtattcgtcttcatcatagaaagagcatcactacaactcacccgtccagtaaaatactcgcttagctctggaacaccaatggccttccctaatcccacatatggaacatgtccattaactgataatgtgtcaaaatattcttcaatttcctcaactaacccagcatcaaccatgccgtcaacacgacgtttcaaatactcattaagaatcacctcattaacatgaacccatagaaaacaacattgccatcgaggcgtcggctgatagctaacctccaattgcccaaaaggatccacaatagacaaatcaaaattgtcaacaaggagaccatggataagtgagttagatccacccaccacaatcggtgtgtgaccacgtctggcaatgcagtttattgtggtttttgcagcatatcgaaaaaatgacacaggaaaatcacctgcgttacgagggatggacgcaataaggtgatgaggtatgaaacatcgatcttgtaaagaaaccttgtttgttgtaatatccaggccatcataaatttgcatcttgtcagcatttaccacttccccaccaatcgccttggctatctcaattgagagtcttgtttttccagttcccgtggcaccaatagtcactactaacttatttcccagcatattgaagaagcaatcacaagaagggtgaaaattgagcatgaaaggaaagtagctaagggttcgtattacctggaacagttcctcagtatataggaaaggggaaagtgtgccgccttgatgtttctagatcaaagcataaatccttcctccttcctcttggcacctccacttaccggaatttggcatatcaatccatgtacagttgaatgtgtatggtaatcatcttgatggggcccaaattcaattagatatactcatacaattatccaagcaattgtgatcgatttttttttctttggagatatttttggcataagagttaacggctcaacccttaaaattgtatcctcaatacgtgtgtaagcataaaacaaattaaacctgatgagctcctttaactttttaaacaatatgcctactttcatcttaatatggtgatgatttgtaaacatgtgcttttacacatttttcaaggaaaaaaaatccgtatcaatccttcatcgaaagtaaattcaaatgtgggcacttcaaatcatacatatgttacttatatgttctctggtaaaagaatactttgaaacttggtaatataataccaaccatctacctcaaaagtacttactaacaatcgttgtaaaatactttgctctatatttacttgttttggcatttctcatgccttccgcaaaatgcaaaaaacaaaatagccatacaatgccaattatcaaataaattcattgcaaaattattagcccttgtgtaatattccagttgatacaatacatatatttaataaacaactccttttatatatggtttgcttttgaaccatcctggttaagatggttatattactgttgctagctctgttactatacgattagaggccatttgattctatcgcaatagatcccatcaactagaacaattcacatgtatttagataatttgcatgctcatgaaaacaaacctgcattggagaagaaaacatgcaactttaagcaaatactgctcattatcctcgggccaagcacaaaagcatcacaaccacgcatacacaaacacactagattacccaccttgtccacccataactagacaaagggaatacaattttattaccaccctcacctactactctaactaataggctatgaccctgtcgcttacatagcagttcaagcatacattactcattggcctcgagccaagcacaaaagcattacaattaggcatagacaagcacaccagagaggccattttgatcacccacatagtgctgctaggtgacaggctatgaccctatcacttacatagcggttacctatatgtgaagttggtccaactctcacccacatactactcctaggtgacaacatatgaccctgtcacttacatagaggtctcctagatgtgatatgaccctgtcacttacatagcggtctcctagatgtgcagctggtccaactctcttttcgaggaccggtccaatattgtcttgatgtttatagaccaaagcataaatccttcctctaggcacctccaattatagtaatttggcatatcaatccatgtgcagttggatgtgtacggtaattatattggtgggccccaaattcagttaggtatactcttactattattcaaccaattgtgatcgattttttttctttgaagatatttttaggcatcagagttaatggctcgaacctttgtatcgtcaatacgtgtgtaagcataacaaaaaaataaacataataattacctttgactttttaaaccttatgcctactttcatcttaatatatggtgatgatttgtaaacatgtgtttttgcacatttttcaaggaaaaattacataacaaaccttcatcgaacgtaaattcaaatgtgggcacttcgaacaatctacatgttacttatacgttctctggtaaaataatacttccaaacttggtaatctaataccaaccatcttccggttactaacaatcgttagaaattactttgcaatatatttacttgttttgccatttcccatgccttctgcaaaatgcaaaaaaaaaaaaaccataccatgccaattatcaactaaattcattgcaaaattattggccattgtgtactattttagttgatacaatacatatatttaataaacaactccttttctatatggtttacttttgaaccatcctggtcaaaatggttatattactgttgctagctctgttactatacaattggaaatcatttgattctatcgcaatagatcccatcagctagaacaattcacatgtatttaggtaacttgcatgatcatgaaaacaaagtagcattgcagaagaaaacaagcacttttaagcaaatattgctcattgtcctcgggccaagcacaaaagcatcacaaccacgcatacacaaacacactagactatccgcctagcttgtccacccacaactggacaaagggaatacaatctcactaccaccctcacatactactctaactggtaggtcataactaggcatagacaagcacacttgataggtgatcttgaccacccacatagtactgctaggtgacaggctataacctgtcacttacatagcggtctcctatatgtgaaattggtccaactcccacccacatgctactcctacgtgacaagatatagccctgtcacttacattgcggtcttctagatatgtagctggtccaactctctttccgaggactagcccaacagggtcccttggttattgtgagcagtttcctttacctcattcctcctaccactgcttgtattgtcatgcttcccttcaacaagaggccaaacaatagcgtcgagggattctgatgggggcttgtatccttgcagatagtcttgtgaagctgccctatcaagtttaacttcggacctttccagacatgcctgctgtgcattgatttgactatagtcctcaccatcacttcttgtcactctttgtggtggtggtggcaaagtccgttggatttgagcttgagatggggttcgaaaataccactggaggcgaagcttgattgcttccaatagttgtccacgagtggtgtgttctttagcaaggtggttgtaccgctcctcccagccggcaatctttgaccgaagcatatctaattcctctaaggcctcctcataggcctcgtctgcagcccacatccacatggagaagtggatgggcgagtgctcctcaaagcccctaaatttccgaatatggcagcggcggtcaccgcattcacggaatggatgtagaaagaacggagtactcacaacctcgatgctgtagatcttacatagacgcatgaatgcctcacgcaacgcatcctggagtgctgcctctttgttggctcgaaggtggcgggacttgaacacatgtccttgacacttctcttccctggcttgaatgtagatcttcat
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| CDS seq | atgaagatctacattcaagccagggaagagaagtgtcaaggacatgtgttcaagtcccgccaccttcgagccaacaaagaggcagcactccaggatgcgttgcgtgaggcattcatgcgtctatgtaagatctacagcatcgaggttgtgagtactccgttctttctacatccattccgtgaatgcggtgaccgccgctgccatattcggaaatttaggggctttgaggagcactcgcccatccacttctccatgtggatgtgggctgcagacgaggcctatgaggaggccttagaggaattagatatgcttcggtcaaagattgccggctgggaggagcggtacaaccaccttgctaaagaacacaccactcgtggacaactattggaagcaatcaagcttcgcctccagtggtattttcgaaccccatctcaagctcaaatccaacggactttgccaccaccaccacaaagagtgacaagaagtgatggtgaggactatagtcaaatcaatgcacagcaggcatgtctggaaaggtccgaagttaaacttgatagggcagcttcacaagactatctgcaaggatacaagcccccatcagaatccctcgacgctattgtttggcctcttgttgaagggaagcatgacaatacaagcagtggtaggaggaatgagaaggcatgggaaatggcaaaacaagtgcctagaggaaggatttatgctttggtctataaacatcaagacaatattggaccggtcctcgaaaagagagttggaccagctgcacatctaggagaccgctatgtaagtgacagggtcatatcacatctaggagacctctatgtaatacgaacccttagctactttcctttcatgctcaattttcacccttcttgtgattgcttcttcaatatgctgggaaataagttagtagtgactattggtgccacgggaactggaaaaacaagactctcaattgagatagccaaggcgattggtggggaagtggtaaatgctgacaagatgcaaatttatgatggcctggatattacaacaaacaaggtttctttacaagatcgatgtttcatacctcatcaccttattgcgtccatccctcgtaacgcaggtgattttcctgtgtcattttttcgatatgctgcaaaaaccacaataaactgcattgccagacgtggtcacacaccgattgtggtgggtggatctaactcacttatccatggtctccttgttgacaattttgatttgtctattgtggatccttttgggcaattggaggttagctatcagccgacgcctcgatggcaatgttgttttctatgggttcatgttaatgaggtgattcttaatgagtatttgaaacgtcgtgttgacggcatggttgatgctgggttagttgaggaaattgaagaatattttgacacattatcagttaatggacatgttccatatgtgggattagggaaggccattggtgttccagagctaagcgagtattttactggacgggtgagttgtagtgatgctctttctatgatgaagacgaatacacagattcttgcacgatctcaagtcacaaagattcatcgcatggttgatgtgtggggatggcatgttcatgcccttgattgtactgaaactattctagcacatcttactggatcaaataagtatatggaggatttggtatggaaacgtgatgtaagtgaccctggacttgctgctatacaagattttctgtga
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| Protein seq | MKIYIQAREEKCQGHVFKSRHLRANKEAALQDALREAFMRLCKIYSIEVVSTPFFLHPFRECGDRRCHIRKFRGFEEHSPIHFSMWMWAADEAYEEALEELDMLRSKIAGWEERYNHLAKEHTTRGQLLEAIKLRLQWYFRTPSQAQIQRTLPPPPQRVTRSDGEDYSQINAQQACLERSEVKLDRAASQDYLQGYKPPSESLDAIVWPLVEGKHDNTSSGRRNEKAWEMAKQVPRGRIYALVYKHQDNIGPVLEKRVGPAAHLGDRYVSDRVISHLGDLYVIRTLSYFPFMLNFHPSCDCFFNMLGNKLVVTIGATGTGKTRLSIEIAKAIGGEVVNADKMQIYDGLDITTNKVSLQDRCFIPHHLIASIPRNAGDFPVSFFRYAAKTTINCIARRGHTPIVVGGSNSLIHGLLVDNFDLSIVDPFGQLEVSYQPTPRWQCCFLWVHVNEVILNEYLKRRVDGMVDAGLVEEIEEYFDTLSVNGHVPYVGLGKAIGVPELSEYFTGRVSCSDALSMMKTNTQILARSQVTKIHRMVDVWGWHVHALDCTETILAHLTGSNKYMEDLVWKRDVSDPGLAAIQDFL |
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| Function | Adenylate isopentenyltransferase 1, chloroplastic [UniProtKB/Swiss-Prot:Q94ID3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0013520 | OsKeNa_12g0013520.01 | Chr12 | 17704846 | 17709150 | - | NAM | ||
| CDS seq | atgaagatctacattcaagccagggaagagaagtgtcaaggacatgtgttcaagtcccgccaccttcgagccaacaaagaggcagcactccaggatgcgttgcgtgaggcattcatgcgtctatgtaagatctacagcatcgaggttgtgagtactccgttctttctacatccattccgtgaatgcggtgaccgccgctgccatattcggaaatttaggggctttgaggagcactcgcccatccacttctccatgtggatgtgggctgcagacgaggcctatgaggaggccttagaggaattagatatgcttcggtcaaagattgccggctgggaggagcggtacaaccaccttgctaaagaacacaccactcgtggacaactattggaagcaatcaagcttcgcctccagtggtattttcgaaccccatctcaagctcaaatccaacggactttgccaccaccaccacaaagagtgacaagaagtgatggtgaggactatagtcaaatcaatgcacagcaggcatgtctggaaaggtccgaagttaaacttgatagggcagcttcacaagactatctgcaaggatacaagcccccatcagaatccctcgacgctattgtttggcctcttgttgaagggaagcatgacaatacaagcagtggtaggaggaatgagaaggcatgggaaatggcaaaacaagtgcctagaggaaggatttatgctttggtctataaacatcaagacaatattggaccggtcctcgaaaagagagttggaccagctgcacatctaggagaccgctatgtaagtgacagggtcatatcacatctaggagacctctatgtaatacgaacccttagctactttcctttcatgctcaattttcacccttcttgtgattgcttcttcaatatgctgggaaataagttagtagtgactattggtgccacgggaactggaaaaacaagactctcaattgagatagccaaggcgattggtggggaagtggtaaatgctgacaagatgcaaatttatgatggcctggatattacaacaaacaaggtttctttacaagatcgatgtttcatacctcatcaccttattgcgtccatccctcgtaacgcaggtgattttcctgtgtcattttttcgatatgctgcaaaaaccacaataaactgcattgccagacgtggtcacacaccgattgtggtgggtggatctaactcacttatccatggtctccttgttgacaattttgatttgtctattgtggatccttttgggcaattggaggttagctatcagccgacgcctcgatggcaatgttgttttctatgggttcatgttaatgaggtgattcttaatgagtatttgaaacgtcgtgttgacggcatggttgatgctgggttagttgaggaaattgaagaatattttgacacattatcagttaatggacatgttccatatgtgggattagggaaggccattggtgttccagagctaagcgagtattttactggacgggtgagttgtagtgatgctctttctatgatgaagacgaatacacagattcttgcacgatctcaagtcacaaagattcatcgcatggttgatgtgtggggatggcatgttcatgcccttgattgtactgaaactattctagcacatcttactggatcaaataagtatatggaggatttggtatggaaacgtgatgtaagtgaccctggacttgctgctatacaagattttctgtga
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| Protein seq | MKIYIQAREEKCQGHVFKSRHLRANKEAALQDALREAFMRLCKIYSIEVVSTPFFLHPFRECGDRRCHIRKFRGFEEHSPIHFSMWMWAADEAYEEALEELDMLRSKIAGWEERYNHLAKEHTTRGQLLEAIKLRLQWYFRTPSQAQIQRTLPPPPQRVTRSDGEDYSQINAQQACLERSEVKLDRAASQDYLQGYKPPSESLDAIVWPLVEGKHDNTSSGRRNEKAWEMAKQVPRGRIYALVYKHQDNIGPVLEKRVGPAAHLGDRYVSDRVISHLGDLYVIRTLSYFPFMLNFHPSCDCFFNMLGNKLVVTIGATGTGKTRLSIEIAKAIGGEVVNADKMQIYDGLDITTNKVSLQDRCFIPHHLIASIPRNAGDFPVSFFRYAAKTTINCIARRGHTPIVVGGSNSLIHGLLVDNFDLSIVDPFGQLEVSYQPTPRWQCCFLWVHVNEVILNEYLKRRVDGMVDAGLVEEIEEYFDTLSVNGHVPYVGLGKAIGVPELSEYFTGRVSCSDALSMMKTNTQILARSQVTKIHRMVDVWGWHVHALDCTETILAHLTGSNKYMEDLVWKRDVSDPGLAAIQDFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0190150 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g09220 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0190150 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005780 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005740 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013420 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005570 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005740 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0240500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006250 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0287000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005670 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005710 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005860 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005860 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012870 | RBH | 0.0 | 0.0 | 0.0 |
