Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0013340 | OGI:12048400 | 13/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:17493961-17494889 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaactagaaaagcatcgcactccttattctagactagtccaacaacaatttattgggggaattaccacctgatctatgcagtggatttcagcttcagaaattgctggtgagaaataactacttgttgggaatgcttctgccatgtccaaaattggcgtatgcttggatagggcaaaaccacttctctggtgacattgcacaggcgattcgaatcaatttacagggatgcttcctcaggagttctgtcaattggttttactgaacttcttggatctatcaagcaatcagatctatggggacctccctacttgctggtcaaatcttcaacaattgtttttcctagatttgtcaagcaatgctttctctggcaaagtcccaaccacaacaagcaaaagtcttcccatctgcaagaacttaacaatggtagatctccgggacaataggctatctgctgaaatttcttcaaggatatgggaaagcttgccttctcttaaaattcttcagttatgctcaaatatgttcgaaggatacataccctggcaactatcaaatcattctcaactgcagctacttgatctagctgacaatcaattggtaggttcaaccagcacacagcacattttgctaacttcagatcaatgatgcaacagaacaaaaggctcaacattggatcaacatatgttgcgttcacatattcaaattactttttgtccccatattctaacagaattgaactaatttggaagagcagatcttatacatttgaaagcacaattccacttctggcagttattgatttacaagcaacattttttcttatgagatacctgcagagtttgcaaaccttaagggtctccagttcctaaaattatcaagaaataatatatctggcagtatcccaaatgatattggcaatatgatgccctag
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| CDS seq | atgcttcctcaggagttctgtcaattggttttactgaacttcttggatctatcaagcaatcagatctatggggacctccctacttgctggtcaaatcttcaacaattgtttttcctagatttgtcaagcaatgctttctctggcaaagtcccaaccacaacaagcaaaagtcttcccatctgcaagaacttaacaatggtagatctccgggacaataggctatctgctgaaatttcttcaaggatatgggaaagcttgccttctcttaaaattcttcagttatgctcaaatatgttcgaaggatacataccctggcaactatcaaatcattctcaactgcagctacttgatctagctgacaatcaattggtagagtttgcaaaccttaagggtctccagttcctaaaattatcaagaaataatatatctggcagtatcccaaatgatattggcaatatgatgccctag
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| Protein seq | MLPQEFCQLVLLNFLDLSSNQIYGDLPTCWSNLQQLFFLDLSSNAFSGKVPTTTSKSLPICKNLTMVDLRDNRLSAEISSRIWESLPSLKILQLCSNMFEGYIPWQLSNHSQLQLLDLADNQLVEFANLKGLQFLKLSRNNISGSIPNDIGNMMP |
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| Function | MDIS1-interacting receptor like kinase 2 [UniProtKB/Swiss-Prot:Q8VZG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0013340 | OsKeNa_12g0013340.01 | Chr12 | 17493961 | 17494889 | + | NAM | ||
| CDS seq | atgcttcctcaggagttctgtcaattggttttactgaacttcttggatctatcaagcaatcagatctatggggacctccctacttgctggtcaaatcttcaacaattgtttttcctagatttgtcaagcaatgctttctctggcaaagtcccaaccacaacaagcaaaagtcttcccatctgcaagaacttaacaatggtagatctccgggacaataggctatctgctgaaatttcttcaaggatatgggaaagcttgccttctcttaaaattcttcagttatgctcaaatatgttcgaaggatacataccctggcaactatcaaatcattctcaactgcagctacttgatctagctgacaatcaattggtagagtttgcaaaccttaagggtctccagttcctaaaattatcaagaaataatatatctggcagtatcccaaatgatattggcaatatgatgccctag
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| Protein seq | MLPQEFCQLVLLNFLDLSSNQIYGDLPTCWSNLQQLFFLDLSSNAFSGKVPTTTSKSLPICKNLTMVDLRDNRLSAEISSRIWESLPSLKILQLCSNMFEGYIPWQLSNHSQLQLLDLADNQLVEFANLKGLQFLKLSRNNISGSIPNDIGNMMP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0217400 | SBH | 0.220661 | 0.061791 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31470 | SBH | 0.524899 | 0.543281 | 0.321447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0217400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013200 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013250 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012740 | RBH | 0.0 | 0.0 | 1.586415 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0286100 | SBH | 0.003285 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012920 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0264500 | RBH | 0.0229445 | 0 | 0.1214305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013640 | SBH | 0.0 | 0.0 | 0.057709 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008790 | SBH | 0.649347 | 0.0 | 0.000000 |
