Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0010760 | OGI:12033240 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:11860629-11861398 | ||||||||
| Gene Symbol | OsUPS, UPS, OsPUB41, PUB41 | ||||||||||
| DNA seq | atggtgaaggcgcaggcgtcgctgttgcagaagaggggtggcgcgatggcggagctggcgatcccggcacacttccggtgcccgatctcactggacctgatgcgcgacctggtgatggcaacgatggggatcacgtacgacagggaggggatcgaggcgtggctggacacggggcgcgcggtgtgccccgtcacccacgcgccgctctggctcgaggaccttgtccccaaccatgccatccgccacgtcatccaggactggtgcgtcgccaacaggtcccacagtgtggagcgcatccccacgcccaagatccccgccacgcccatccaggcctccgagatgctgttcaacgtcgccgagtcggcgcggtgtggtgcggcggagcgcgccaccgagcggtcgctcctattagtgctacttccttcgttttacaatgtaagtcattctagcattttctacgtttatattgatgttaatgaatctagactattagattgtgaaacggagggagtaattcctccgatatatatatgtagcagttatttactttgtccagtgttaatctagatacattgcatccattttgaagaaatgagacatatatgaactaaatttcattgctgtacactgcctcggttgtgtagagaagcttgttgtttatgtgctgcaagcaaatataatggtttcaagtctgtctttcattcaatcatttatttggcatgaacaggaaaaatggatggaagtgggtattttacaaacttgataaatga
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| CDS seq | atggtgaaggcgcaggcgtcgctgttgcagaagaggggtggcgcgatggcggagctggcgatcccggcacacttccggtgcccgatctcactggacctgatgcgcgacctggtgatggcaacgatggggatcacgtacgacagggaggggatcgaggcgtggctggacacggggcgcgcggtgtgccccgtcacccacgcgccgctctggctcgaggaccttgtccccaaccatgccatccgccacgtcatccaggactggtgcgtcgccaacaggaaaaatggatggaagtgggtattttacaaacttgataaatga |
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| Protein seq | MVKAQASLLQKRGGAMAELAIPAHFRCPISLDLMRDLVMATMGITYDREGIEAWLDTGRAVCPVTHAPLWLEDLVPNHAIRHVIQDWCVANRKNGWKWVFYKLDK |
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| Function | U-box domain-containing protein 25 [UniProtKB/Swiss-Prot:Q9LT79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0010760 | OsKeNa_12g0010760.01 | Chr12 | 11860629 | 11861398 | + | NAM | ||
| CDS seq | atggtgaaggcgcaggcgtcgctgttgcagaagaggggtggcgcgatggcggagctggcgatcccggcacacttccggtgcccgatctcactggacctgatgcgcgacctggtgatggcaacgatggggatcacgtacgacagggaggggatcgaggcgtggctggacacggggcgcgcggtgtgccccgtcacccacgcgccgctctggctcgaggaccttgtccccaaccatgccatccgccacgtcatccaggactggtgcgtcgccaacaggaaaaatggatggaagtgggtattttacaaacttgataaatga
More
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| Protein seq | MVKAQASLLQKRGGAMAELAIPAHFRCPISLDLMRDLVMATMGITYDREGIEAWLDTGRAVCPVTHAPLWLEDLVPNHAIRHVIQDWCVANRKNGWKWVFYKLDK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0570000 | SBH | 6.729723 | 6.024396 | 10.446102 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13740 | SBH | 0.0 | 0.0 | 0.092256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0570000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010550 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0010150 | RBH | 0.0 | 0.0 | 0.190982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010710 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017670 | SBH | 0.400499 | 0.439675 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017250 | SBH | 14.058772 | 24.631222 | 34.539188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0123200 | SBH | 0.081103 | 5.007778 | 0.0637245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017130 | SBH | 0.707728 | 0.966235 | 1.602206 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0188400 | RBH | 0 | 0.2307815 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017350 | SBH | 0.746738 | 0.532959 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0010620 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009250 | SBH | 7.374124 | 9.214890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009210 | SBH | 1.343111 | 0.0 | 2.471994 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017730 | SBH | 1.585549 | 5.888317 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009110 | SBH | 0.997110 | 3.634517 | 3.965300 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0010210 | RBH | 0.0 | 0.0 | 0.000000 |
