Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0010510 | OGI:12018990 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:11620944-11621404 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatagcttggcaattttctcctgttgggcatgcttctgatttatggcttgagtcttgtaattaatgtggaggtcatcaatagcatccaacattgtagtcatatgcacaatcatttggttatcttctccttgggtacgtgtacaaccattcaaccaaaaatcatcaccatgtttcagatggtagtgatatgtaaaattctccagacgattcttgaaatgacgaccgcgacgacacaaagcttcatatgcgactcctttacaagcataaaagaaacaattggcgaagcgacaccttcacgagcatacaagaaacaattagccttgccattgaatgatagctggggaagatcttccttgttggaaacaagagtaacagttgtcttgcaatgcaattggtctccaacatgagtagatactttagtgtactttggtggaacctcatatccaagatcatacgtcat
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| CDS seq | atgacgtatgatcttggatatgaggttccaccaaagtacactaaagtatctactcatgttggagaccaattgcattgcaagacaactgttactcttgtttccaacaaggaagatcttccccagctatcattcaatggcaaggctaattgtttcttgtgtcgcttcgccaattgtttcttttatgcttgtaaaggagtcgcatatgaagctttgtgtcgtcgcggtcgtcatttcaagaatcgtctggagaattttacatatcactaccatctgaaacatggtgatgatttttggttgaatggttgtacacgtacccaaggagaagataaccaaatgattgtgcatatgactacaatgttggatgctattgatgacctccacattaattacaagactcaagccataaatcagaagcatgcccaacaggagaaaattgccaagctatag
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| Protein seq | MTYDLGYEVPPKYTKVSTHVGDQLHCKTTVTLVSNKEDLPQLSFNGKANCFLCRFANCFFYACKGVAYEALCRRGRHFKNRLENFTYHYHLKHGDDFWLNGCTRTQGEDNQMIVHMTTMLDAIDDLHINYKTQAINQKHAQQEKIAKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0010510 | OsKeNa_12g0010510.01 | Chr12 | 11620944 | 11621404 | - | NAM | ||
| CDS seq | atgacgtatgatcttggatatgaggttccaccaaagtacactaaagtatctactcatgttggagaccaattgcattgcaagacaactgttactcttgtttccaacaaggaagatcttccccagctatcattcaatggcaaggctaattgtttcttgtgtcgcttcgccaattgtttcttttatgcttgtaaaggagtcgcatatgaagctttgtgtcgtcgcggtcgtcatttcaagaatcgtctggagaattttacatatcactaccatctgaaacatggtgatgatttttggttgaatggttgtacacgtacccaaggagaagataaccaaatgattgtgcatatgactacaatgttggatgctattgatgacctccacattaattacaagactcaagccataaatcagaagcatgcccaacaggagaaaattgccaagctatag
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| Protein seq | MTYDLGYEVPPKYTKVSTHVGDQLHCKTTVTLVSNKEDLPQLSFNGKANCFLCRFANCFFYACKGVAYEALCRRGRHFKNRLENFTYHYHLKHGDDFWLNGCTRTQGEDNQMIVHMTTMLDAIDDLHINYKTQAINQKHAQQEKIAKL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010290 | RBH | 0.557042 | 0.0 | 1.354316 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001830 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010450 | RBH | 0.000000 | 0.0 | 3.250889 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010250 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0010060 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0171800 | RBH | 0.0019525 | 0.00513 | 0.0013295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003040 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0218000 | RBH | 0.007347 | 0.022104 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002850 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0010360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002940 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001900 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001960 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009960 | RBH | 0.0 | 0.0 | 0.000000 |
