Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0009460 | OGI:12027560 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:9612348-9615777 | ||||||||
| Gene Symbol | OsPUB25 | ||||||||||
| DNA seq | ccaaaaaaaacttcagtgacttccattctcacataagatttgccttcattagacttgcagattatcaaaattagaagtacagaaaacaatatatacacatgatctacaaaatttattacaagtacagaacaatatgcacattaccaagactatcaatgcctaactactaTttttttctgacacaaaaactaaaatccctaattccaaacgttagcaaatcaacaaaattaacttgaaatggcaaaaaaattccttgtccataaggcataggcaggtcatggcattcggttacttcacaatttcatagcctagcgatcagacctaaagtaacgctccatgcttccaattgacgaacctcgtctcgagggatgcttatcaatgatttgggagaaagttggcaacttgttaatgtgcttcagtgatgcctctgcgatacgtcgtgttctggaatccccattctggaaagcatgaacaagggcagaactcaagccacggtcgcttgaagctgcttttgcaatgttctctgcccgcaaaatcctctcgacagcccatgtcaccctctgctgaagtgtgcctgttggatttcccttcaagatttcaaatattggttcaaccgcattggccatatagagcaccgaaacaccttcagtgatctccacgccatccccaagtagggtgcaaagtgcagccaaagaggcttcaacgaccttcttgttttgatggctaagacaaacaaccaatcgctccactgccttcccttcaagaatacaaaaattgtctctaatcgagcagattccagagtgaacacgacaaagttgaatacctggtggtttcttaccaaaccaggtaagcccagacttctgttcatgttcatcgaaatttggtgtgccagtcatatatcttgattcaacagagagattcactaatgcctttgcagagagcagctgcacaccatccagcccattcagccgaagcaagctggtaaacagtgaagcaagattgtattcacgagcaagggcaacacagcgtggctcctcccgtagaatgtacgttatccttgccagaacttttacaagcccttcaagcatcgtgttatcaactatgttattggcagttcctcttctacatatgtttaaaactttgcgcgcaatatatttgaaagccccttgctccatgagctccatggtaagacgtctgtcccttttaggaagatttgccagaatctgaagtgcagcatcttgctcatctgcatttgcatcattttcactgacaatcctaactaagcatccaagcaatgtaggactacttcggaggacttgtgctatctcatggtccatgtcaaatgagattttgcacagcagctttatggaagcagcacggctctcctgatgatcactctctacaaattgtaccaagtttgtgatagccccagatgatcttatagctgagataattgacagaactgttgtggtagaactacttagcattacaaatatttcaagaagcttgcactgtattggcggagaggtgttactaatcaaatgaagtaagctgtgaacaatgtcttcagacactatagtacgattaccatccagtgggactgtcccaaagtcaataccacaagctaccagattagatagaactgctgcagcagcctcttgcagccttggtggaaggaatttgacaccatcaacagagagaactcggaaaagcggtaaaaggattccatcctctataagaaccttggcactttctgtattggtggatatatgatctaacaccttgaaagcaacttcttttgccggcaaggtaccattttcaacaacaccagcaaacagtaaacccactctttgggccaccaagtttttcaagtcgttagacagaacaatcttttctagagatgatgctatccgcaactgcttttctggagaacctgaaaagtgcagtatgtcctacatggtaagaacttaatatttccaataaagtagaaataagaacactatgatattgtttgtctattgattagaaaaactatattgacacttgagcaaaagcagagtttacttcagcacagtgcaaatgatatcgaatgctaacttatcatgaaaccatcgaaaacaacaaataacagaaagataagtagatactgagtataattggtgaaccattaaatgaagaacgaacagactggagacagcaccttcaataagcaggtttagtagaggttccagtcttccattttcagccatttgcaggacatttttctcgcatttctccagattctcaagcgtcatctcagcctcctcggctaacgctggattctgtgatttgctacatgccaccttgcccaagataagtatcgctccattcaattcgcttatcttttcgcataccatttcagatttcgacagctcacacagaagagatacagccaactccctctcctggcaatcctcgaaatcgatgaacttaacaatcctgcgaattgtgtccccttcagatacagaatcctaaaaaaaaagagaacaaaaccatgaatttccgagttagtgctatgtagtaccaagacataaaaatccattccgttgcatcgtccctctgcttaccctgtattcatcgtcctctcttgcaaactcccgaagggcttgcaacgctttgagacgcacccttgcgctgccgttcctcagcatggcggccaccatgggcaccatcccgtcgcggcgcacgacgcgcttgccgaccctcgcaagcttccacccgcgcatcacggcgtcgagcccgcgcagcgcctccttctccgaggcggccttggtgagccaccggcacgccctccggagcgccgccgtctcccgcctgctcgtccactcctcgatggccgcccgcagcgccacgacgggcttcacgtccgcgccgtcgaccacctccatcgtgacggggcaccgcggcgccgcgccgagcgaggcgcactccgagaaccaccgcgcgatcgcctcccgctcgaacgcgtggcccgtctccaccaccaccgggtcccgcatcacctccatggtgatcgggcacaggaacgccgacagcaccccgtcctcctcctcctcctcgccctcctccccatcgtcggacccctcgccgcaccagtcccgaccaccctccgcaacccaccaagctaaataaacacagcaccaagaaccctcgtgagcaatccgtcgaacatcctgtgggcaagaacaaatcgccaacgaaatgaagccaccactgtaccttgttcttggcgctgcgatccttggcggcgctgggccattcgccgtcgtcgtcgacgccgcgggaggaggaggaggaggaggagaagccgagctggagttgacggttgtggggttgactcctcggcattggatagtatcggggagaagaactcgtcggcattgaattggat
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| CDS seq | atggcccagcgccgccaaggatcgcagcgccaagaacaagcttggtgggttgcggagggtggtcgggactggtgcggcgaggggtccgacgatggggaggagggcgaggaggaggaggaggacggggtgctgtcggcgttcctgtgcccgatcaccatggaggtgatgcgggacccggtggtggtggagacgggccacgcgttcgagcgggaggcgatcgcgcggtggttctcggagtgcgcctcgctcggcgcggcgccgcggtgccccgtcacgatggaggtggtcgacggcgcggacgtgaagcccgtcgtggcgctgcgggcggccatcgaggagtggacgagcaggcgggagacggcggcgctccggagggcgtgccggtggctcaccaaggccgcctcggagaaggaggcgctgcgcgggctcgacgccgtgatgcgcgggtggaagcttgcgagggtcggcaagcgcgtcgtgcgccgcgacgggatggtgcccatggtggccgccatgctgaggaacggcagcgcaagggtgcgtctcaaagcgttgcaagcccttcgggagtttgcaagagaggacgatgaatacagggattctgtatctgaaggggacacaattcgcaggattgttaagttcatcgatttcgaggattgccaggagagggagttggctgtatctcttctgtgtgagctgtcgaaatctgaaatggtatgcgaaaagataagcgaattgaatggagcgatacttatcttgggcaaggtggcatgtagcaaatcacagaatccagcgttagccgaggaggctgagatgacgcttgagaatctggagaaatgcgagaaaaatgtcctgcaaatggctgaaaatggaagactggaacctctactaaacctgcttattgaaggttctccagaaaagcagttgcggatagcatcatctctagaaaagattgttctgtctaacgacttgaaaaacttggtggcccaaagagtgggtttactgtttgctggtgttgttgaaaatggtaccttgccggcaaaagaagttgctttcaaggtgttagatcatatatccaccaatacagaaagtgccaaggttcttatagaggatggaatccttttaccgcttttccgagttctctctgttgatggtgtcaaattccttccaccaaggctgcaagaggctgctgcagcagttctatctaatctggtagcttgtggtattgactttgggacagtcccactggatggtaatcgtactatagtgtctgaagacattgttcacagcttacttcatttgattagtaacacctctccgccaatacagtgcaagcttcttgaaatatttgtaatgctaagtagttctaccacaacagttctgtcaattatctcagctataagatcatctggggctatcacaaacttggtacaatttgtagagagtgatcatcaggagagccgtgctgcttccataaagctgctgtgcaaaatctcatttgacatggaccatgagatagcacaagtcctccgaagtagtcctacattgcttggatgcttagttaggattgtcagtgaaaatgatgcaaatgcagatgagcaagatgctgcacttcagattctggcaaatcttcctaaaagggacagacgtcttaccatggagctcatggagcaaggggctttcaaatatattgcgcgcaaagttttaaacatatgtagaagaggaactgccaataacatagttgataacacgatgcttgaagggcttgtaaaagttctggcaaggataacgtacattctacgggaggagccacgctgtgttgcccttgctcgtgaatacaatcttgcttcactgtttaccagcttgcttcggctgaatgggctggatggtgtgcagctgctctctgcaaaggcattagtgaatctctctgttgaatcaagatatatgactggcacaccaaatttcgatgaacatgaacagaagtctgggcttacctggtttggtaagaaaccaccaggtattcaactttgtcgtgttcactctggaatctgctcgattagagacaatttttgtattcttgaagggaaggcagtggagcgattggttgtttgtcttagccatcaaaacaagaaggtcgttgaagcctctttggctgcactttgcaccctacttggggatggcgtggagatcactgaaggtgtttcggtgctctatatggccaatgcggttgaaccaatatttgaaatcttgaagggaaatccaacaggcacacttcagcagagggtgacatgggctgtcgagaggattttgcgggcagagaacattgcaaaagcagcttcaagcgaccgtggcttgagttctgcccttgttcatgctttccagaatggggattccagaacacgacgtatcgcagaggcatcactgaagcacattaacaagttgccaactttctcccaaatcattgataagcatccctcgagacgaggttcgtcaattggaagcatggagcgttactttaggtctgatcgctag
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| Protein seq | MAQRRQGSQRQEQAWWVAEGGRDWCGEGSDDGEEGEEEEEDGVLSAFLCPITMEVMRDPVVVETGHAFEREAIARWFSECASLGAAPRCPVTMEVVDGADVKPVVALRAAIEEWTSRRETAALRRACRWLTKAASEKEALRGLDAVMRGWKLARVGKRVVRRDGMVPMVAAMLRNGSARVRLKALQALREFAREDDEYRDSVSEGDTIRRIVKFIDFEDCQERELAVSLLCELSKSEMVCEKISELNGAILILGKVACSKSQNPALAEEAEMTLENLEKCEKNVLQMAENGRLEPLLNLLIEGSPEKQLRIASSLEKIVLSNDLKNLVAQRVGLLFAGVVENGTLPAKEVAFKVLDHISTNTESAKVLIEDGILLPLFRVLSVDGVKFLPPRLQEAAAAVLSNLVACGIDFGTVPLDGNRTIVSEDIVHSLLHLISNTSPPIQCKLLEIFVMLSSSTTTVLSIISAIRSSGAITNLVQFVESDHQESRAASIKLLCKISFDMDHEIAQVLRSSPTLLGCLVRIVSENDANADEQDAALQILANLPKRDRRLTMELMEQGAFKYIARKVLNICRRGTANNIVDNTMLEGLVKVLARITYILREEPRCVALAREYNLASLFTSLLRLNGLDGVQLLSAKALVNLSVESRYMTGTPNFDEHEQKSGLTWFGKKPPGIQLCRVHSGICSIRDNFCILEGKAVERLVVCLSHQNKKVVEASLAALCTLLGDGVEITEGVSVLYMANAVEPIFEILKGNPTGTLQQRVTWAVERILRAENIAKAASSDRGLSSALVHAFQNGDSRTRRIAEASLKHINKLPTFSQIIDKHPSRRGSSIGSMERYFRSDR |
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| Function | U-box domain-containing protein 44 [UniProtKB/Swiss-Prot:Q9LM76] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0009460 | OsKeNa_12g0009460.01 | Chr12 | 9612348 | 9615777 | - | NAM | ||
| CDS seq | atggcccagcgccgccaaggatcgcagcgccaagaacaagcttggtgggttgcggagggtggtcgggactggtgcggcgaggggtccgacgatggggaggagggcgaggaggaggaggaggacggggtgctgtcggcgttcctgtgcccgatcaccatggaggtgatgcgggacccggtggtggtggagacgggccacgcgttcgagcgggaggcgatcgcgcggtggttctcggagtgcgcctcgctcggcgcggcgccgcggtgccccgtcacgatggaggtggtcgacggcgcggacgtgaagcccgtcgtggcgctgcgggcggccatcgaggagtggacgagcaggcgggagacggcggcgctccggagggcgtgccggtggctcaccaaggccgcctcggagaaggaggcgctgcgcgggctcgacgccgtgatgcgcgggtggaagcttgcgagggtcggcaagcgcgtcgtgcgccgcgacgggatggtgcccatggtggccgccatgctgaggaacggcagcgcaagggtgcgtctcaaagcgttgcaagcccttcgggagtttgcaagagaggacgatgaatacagggattctgtatctgaaggggacacaattcgcaggattgttaagttcatcgatttcgaggattgccaggagagggagttggctgtatctcttctgtgtgagctgtcgaaatctgaaatggtatgcgaaaagataagcgaattgaatggagcgatacttatcttgggcaaggtggcatgtagcaaatcacagaatccagcgttagccgaggaggctgagatgacgcttgagaatctggagaaatgcgagaaaaatgtcctgcaaatggctgaaaatggaagactggaacctctactaaacctgcttattgaaggttctccagaaaagcagttgcggatagcatcatctctagaaaagattgttctgtctaacgacttgaaaaacttggtggcccaaagagtgggtttactgtttgctggtgttgttgaaaatggtaccttgccggcaaaagaagttgctttcaaggtgttagatcatatatccaccaatacagaaagtgccaaggttcttatagaggatggaatccttttaccgcttttccgagttctctctgttgatggtgtcaaattccttccaccaaggctgcaagaggctgctgcagcagttctatctaatctggtagcttgtggtattgactttgggacagtcccactggatggtaatcgtactatagtgtctgaagacattgttcacagcttacttcatttgattagtaacacctctccgccaatacagtgcaagcttcttgaaatatttgtaatgctaagtagttctaccacaacagttctgtcaattatctcagctataagatcatctggggctatcacaaacttggtacaatttgtagagagtgatcatcaggagagccgtgctgcttccataaagctgctgtgcaaaatctcatttgacatggaccatgagatagcacaagtcctccgaagtagtcctacattgcttggatgcttagttaggattgtcagtgaaaatgatgcaaatgcagatgagcaagatgctgcacttcagattctggcaaatcttcctaaaagggacagacgtcttaccatggagctcatggagcaaggggctttcaaatatattgcgcgcaaagttttaaacatatgtagaagaggaactgccaataacatagttgataacacgatgcttgaagggcttgtaaaagttctggcaaggataacgtacattctacgggaggagccacgctgtgttgcccttgctcgtgaatacaatcttgcttcactgtttaccagcttgcttcggctgaatgggctggatggtgtgcagctgctctctgcaaaggcattagtgaatctctctgttgaatcaagatatatgactggcacaccaaatttcgatgaacatgaacagaagtctgggcttacctggtttggtaagaaaccaccaggtattcaactttgtcgtgttcactctggaatctgctcgattagagacaatttttgtattcttgaagggaaggcagtggagcgattggttgtttgtcttagccatcaaaacaagaaggtcgttgaagcctctttggctgcactttgcaccctacttggggatggcgtggagatcactgaaggtgtttcggtgctctatatggccaatgcggttgaaccaatatttgaaatcttgaagggaaatccaacaggcacacttcagcagagggtgacatgggctgtcgagaggattttgcgggcagagaacattgcaaaagcagcttcaagcgaccgtggcttgagttctgcccttgttcatgctttccagaatggggattccagaacacgacgtatcgcagaggcatcactgaagcacattaacaagttgccaactttctcccaaatcattgataagcatccctcgagacgaggttcgtcaattggaagcatggagcgttactttaggtctgatcgctag
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| Protein seq | MAQRRQGSQRQEQAWWVAEGGRDWCGEGSDDGEEGEEEEEDGVLSAFLCPITMEVMRDPVVVETGHAFEREAIARWFSECASLGAAPRCPVTMEVVDGADVKPVVALRAAIEEWTSRRETAALRRACRWLTKAASEKEALRGLDAVMRGWKLARVGKRVVRRDGMVPMVAAMLRNGSARVRLKALQALREFAREDDEYRDSVSEGDTIRRIVKFIDFEDCQERELAVSLLCELSKSEMVCEKISELNGAILILGKVACSKSQNPALAEEAEMTLENLEKCEKNVLQMAENGRLEPLLNLLIEGSPEKQLRIASSLEKIVLSNDLKNLVAQRVGLLFAGVVENGTLPAKEVAFKVLDHISTNTESAKVLIEDGILLPLFRVLSVDGVKFLPPRLQEAAAAVLSNLVACGIDFGTVPLDGNRTIVSEDIVHSLLHLISNTSPPIQCKLLEIFVMLSSSTTTVLSIISAIRSSGAITNLVQFVESDHQESRAASIKLLCKISFDMDHEIAQVLRSSPTLLGCLVRIVSENDANADEQDAALQILANLPKRDRRLTMELMEQGAFKYIARKVLNICRRGTANNIVDNTMLEGLVKVLARITYILREEPRCVALAREYNLASLFTSLLRLNGLDGVQLLSAKALVNLSVESRYMTGTPNFDEHEQKSGLTWFGKKPPGIQLCRVHSGICSIRDNFCILEGKAVERLVVCLSHQNKKVVEASLAALCTLLGDGVEITEGVSVLYMANAVEPIFEILKGNPTGTLQQRVTWAVERILRAENIAKAASSDRGLSSALVHAFQNGDSRTRRIAEASLKHINKLPTFSQIIDKHPSRRGSSIGSMERYFRSDR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.446186 | 0.204326 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0277000 | RBH | 0.341102 | 0.498071 | 0.710360 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17880 | RBH | 0.222211 | 0.322709 | 0.173489 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0277000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009270 | RBH | 0.064442 | 5.747591 | 0.608782 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009490 | RBH | 0.676180 | 2.679040 | 3.422666 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009400 | RBH | 0.430521 | 2.679643 | 1.477896 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009200 | RBH | 0.049335 | 0.076277 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009080 | RBH | 0.681313 | 0.000000 | 0.739332 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0142100 | RBH | 1.889377 | 9.0422475 | 2.3605535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009090 | RBH | 0.0 | 0.329395 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0155100 | RBH | 1.8675605 | 12.9706325 | 3.5774925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009040 | RBH | 0.028449 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009240 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009230 | RBH | 0.000000 | 2.168359 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009190 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009320 | RBH | 0.040573 | 0.476518 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009080 | RBH | 0.000000 | 0.305436 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008980 | RBH | 0.328777 | 10.893640 | 0.468859 |
