Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0008570 | OGI:12023280 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:8241727-8243699 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacttagtcaacctctccttagctaaacagatcaatgattgggctaactctttagctttcagtgtctcaatgttatctaaaattttagaatcattttgacctagcataacaccagaatctacagcaatatttgcaagaatagaattatcaacaaaattaaagattgcaaatttatttttatctgagatatcattcttcgcctgtgtcctcttctgagccttcatagatatcgacaccgcatctctaatgatcctcttgctatgcctcttgggaatcactacctcttccagtttcctgcttttcttcttccttcctgaaGgtatgaaacattcatcaaggtctggtgtgtctatctcttctccagtaatcacctccagctgcttaaggtcaatatccatctaagtctgcaaggagactcgatgctcccagttactcaacccctcatcctcgaggccaacatcagccaccaaagatatcatattctcattcttcttttcctcatttccctctaggaccttaggtttcacctcttcacctttcaactgtgcgtctggcatagcctctcctccttcattgacttgagttccaataattagttgcttatccaccaagttgatttgttcctccacctcatctgattgttcacaatcaaactcaggtatgtccactttatcttccccccctctaattcatctttttcctcaccctccatttctttcactttgttgtgcttgaagttgctgctgtctcccttgctttgtatattccttttgggagtttctttagtgttattgtctttcccatcatcactgtcctaggagtcatctaactctttgtcccttccccttcttctgtcctttctacaattgtcttttggatcatccagtgacacagcctaaatgccttcagggttcgaagtgattttgtaacccactctattcaggaatatctctgaagtgccaccaatttttgttgggtctctacaccagactttaattctgacaacctcgctgtttaaactgattgcatccacttccaacgtatctccaattaggtaagctatcttcttcataatactttctgtcttagccatcggaggaactccataagctatcacccacacctcttgcagctcaacagaagcttcaatagtcctctctgtgtctctcagattcgctcgaatatttgattcttgaaaatcaaagcccttcaacctagtgagctcccttcgagtatctttgtttggaaattccaacataaatttcttttgctccacttgctttattttccaatcccatgtttgatatttctcaaagaggtacctcatttccctcacaatctttgcttcagagcaaaatccactttcaactgtcagcaacccaacaaatggttttttttgctaactcctcttcatgcacatccagatgaaggcaatgaaatacctgaaggcaatgaaatacctgacccggcatcctgtaaccacagagtttcatcagatctggacaatttgacaatatatgaccaaatttcttacaagtgaaaCAgagagatggattgggacaattagcctggtGgtgtccccctttgccacacttgtaacactttctcactggatcctcatctctgagattCcccccatcacgctgatcccccaaacggcaaaaaggattgacgcgagaattttgctcacctttgagatgatccttagcctcaactttctctttgttcttctccacttctgattcaactggccgctttccatcacctccctagctgagatgatcttctctcctgcgttcatcgggatccctccgctgcggccaatcttccttcctctcctgctccctgcagaTTttagctcagagatcctcctctttgcgccgcctctacgctcctcccaacctcctaaatccctctcttcctgtctcctcttgttgatgggacactgctcctccctccactttcgctccat
More
|
||||||||||
| CDS seq | atggagcgaaagtggagggaggagcagtgtcccatcaacaagaggagacaggaagagagggatttaggaggttgggaggagcgtagaggcggcgcaaagaggaggatctctgagctaaAAtctgcagggagcaggagaggaaggaagattggccgcagcggagggatcccgatgaacgcaggagagaagatcatctcagctagggaggtgatggaaagcggccagttgaatcagaagtggagaagaacaaagagaaagttgaggctaaggatcatctcaaaggatgccgggtcaggtatttcattgccttcagcaaagattgtgagggaaatgaggtacctctttgagaaatatcaaacatgggattggaaaataaagcaagtggagcaaaagaaatttatgttggaatttccaaacaaagatactcgaagggagctcactaggttgaagggctttgattttcaagaatcaaatattcgagcgaatctgagagacacagagaggactattgaagcttctgttgagctgcaagaggtgtgggtgatagcttatggagttcctccgatggctaagacagaaaatgaggtggaggaacaaatcaacttggtggataagcaactaattattggaactcaagtcaatgaaggaggagaggctatgccagacgcacagttgaaaggtgaagaggtgaaacctaaggtcctagagggaaatgaggaaaagaagaatgagaatatgatatctttggtggctgatgttggcctcgaggatgaggggttgagaaggaagaagaaaagcaggaaactggaagaggtagtgattcccaagaggcatagcaagaggatcattagagatgcggtgtcgatatctatgaaggctcagaagaggacacaggcgaagaatgatatctcagataaaaataaatttgcaatctttaattttgttgataattctattcttgcaaatattgctgtagattctggtgttatgctaggtcaaaatgattctaaaattttagataacattgagacactgaaagctaaagagttagcccaatcattgatctgtttagctaaggagaggttgactaagtag
More
|
||||||||||
| Protein seq | MERKWREEQCPINKRRQEERDLGGWEERRGGAKRRISELKSAGSRRGRKIGRSGGIPMNAGEKIISAREVMESGQLNQKWRRTKRKLRLRIISKDAGSGISLPSAKIVREMRYLFEKYQTWDWKIKQVEQKKFMLEFPNKDTRRELTRLKGFDFQESNIRANLRDTERTIEASVELQEVWVIAYGVPPMAKTENEVEEQINLVDKQLIIGTQVNEGGEAMPDAQLKGEEVKPKVLEGNEEKKNENMISLVADVGLEDEGLRRKKKSRKLEEVVIPKRHSKRIIRDAVSISMKAQKRTQAKNDISDKNKFAIFNFVDNSILANIAVDSGVMLGQNDSKILDNIETLKAKELAQSLICLAKERLTK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0008570 | OsKeNa_12g0008570.01 | Chr12 | 8241727 | 8243699 | - | NAM | ||
| CDS seq | atggagcgaaagtggagggaggagcagtgtcccatcaacaagaggagacaggaagagagggatttaggaggttgggaggagcgtagaggcggcgcaaagaggaggatctctgagctaaAAtctgcagggagcaggagaggaaggaagattggccgcagcggagggatcccgatgaacgcaggagagaagatcatctcagctagggaggtgatggaaagcggccagttgaatcagaagtggagaagaacaaagagaaagttgaggctaaggatcatctcaaaggatgccgggtcaggtatttcattgccttcagcaaagattgtgagggaaatgaggtacctctttgagaaatatcaaacatgggattggaaaataaagcaagtggagcaaaagaaatttatgttggaatttccaaacaaagatactcgaagggagctcactaggttgaagggctttgattttcaagaatcaaatattcgagcgaatctgagagacacagagaggactattgaagcttctgttgagctgcaagaggtgtgggtgatagcttatggagttcctccgatggctaagacagaaaatgaggtggaggaacaaatcaacttggtggataagcaactaattattggaactcaagtcaatgaaggaggagaggctatgccagacgcacagttgaaaggtgaagaggtgaaacctaaggtcctagagggaaatgaggaaaagaagaatgagaatatgatatctttggtggctgatgttggcctcgaggatgaggggttgagaaggaagaagaaaagcaggaaactggaagaggtagtgattcccaagaggcatagcaagaggatcattagagatgcggtgtcgatatctatgaaggctcagaagaggacacaggcgaagaatgatatctcagataaaaataaatttgcaatctttaattttgttgataattctattcttgcaaatattgctgtagattctggtgttatgctaggtcaaaatgattctaaaattttagataacattgagacactgaaagctaaagagttagcccaatcattgatctgtttagctaaggagaggttgactaagtag
More
|
|||||||
| Protein seq | MERKWREEQCPINKRRQEERDLGGWEERRGGAKRRISELKSAGSRRGRKIGRSGGIPMNAGEKIISAREVMESGQLNQKWRRTKRKLRLRIISKDAGSGISLPSAKIVREMRYLFEKYQTWDWKIKQVEQKKFMLEFPNKDTRRELTRLKGFDFQESNIRANLRDTERTIEASVELQEVWVIAYGVPPMAKTENEVEEQINLVDKQLIIGTQVNEGGEAMPDAQLKGEEVKPKVLEGNEEKKNENMISLVADVGLEDEGLRRKKKSRKLEEVVIPKRHSKRIIRDAVSISMKAQKRTQAKNDISDKNKFAIFNFVDNSILANIAVDSGVMLGQNDSKILDNIETLKAKELAQSLICLAKERLTK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g18260 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008590 | SBH | 0.0 | 0.835598 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009390 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008270 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0145800 | SBH | 0 | 0.116016 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009290 | SBH | 0.000000 | 0.0 | 0.123423 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009210 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009430 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009410 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009380 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009270 | SBH | 0.185705 | 3.963902 | 3.712833 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009160 | SBH | 0.0 | 0.0 | 0.0 |
