Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0008260 | OGI:12021730 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:7737455-7739049 | ||||||||
| Gene Symbol | RLCK366, OsRLCK366 | ||||||||||
| DNA seq | tcatgctagctttgttgtcactttgtaggttgttgttacttcctaagtaaaaaaattacattacagtagtattccattgtcatttttctctgtgggtcctgtatagggtagttggaggtggtggtggccgtgacagacttaccaccaccattaccatgtcttaaagtcgatgtgatttcatataaatagatgtgattttgtataattggagaaaactttgatattgtttacgtgctttgcatgtatcagatgaatgttactctgtttgtctatttacggtgaaatatgtttaatttcatccatattgacaatttcgtatatagtacgtgcatgattactagtcacctctataaggcactctgagaaaaactaacgcttaatccaatgtgtcgagtactctcacctctataaggcactctgagaaatactaacgcttaatccaatatgtcaagtaattaagagtacgtgtccaattaaggcgtaccctactatggctgaaatgagcatatccgataaaaaaaaaacaaactagagatgtgtattaattgtgcagaaagatgcaacacctgagtccttggaggtgatgggatacgcatgtgctcgtgagctcggttgactcgcctgtgcggtgatatccgttcttgccagggtgcccgtccattagtattttgtgcgtgtggatgcgacttccatagttcgacacaagtgaaaaaaaaaagcatatcattaatggccaacctttgattggtatacctatattgtgaaagaaaccgtttattgactccttgtttagttcttttttttttcctaaaaacatcacatcgaatctttgactatatatatgtatggagcattaaatatagataaaataaaaaaactaattacacagtttgtgtagaaatcgcgagacgaatcttttgagcctaattagtccatgattagctataagtgatacagtaatacgtatgtgctaattatagattaattaggcttaataaattcgtctcgcggtttttccaggcgagttatcaaattagttttttcattcgtgtccaaaaactccttccgacatcccgtcaacgtccgatgtaccacccaaaatatttcttttcctggactaaacaaggccaaaatattgataacttgatttgcggttttaggtaccttacccttggtggccgccgggtgtagtcaacgtcgtcttggattcgcgcaagaacaatagtaacatgaacactcgttgcaagcattccctccatcatctgatccgagatgtcatcttgcacccggcgcaacttcttggaaagagcagtggccgcgcagaagaggcacacgatgttcctctcctggcacgccgcgatgagcgtgtgggcgtggcggagcgtcgagtcgagctcctccagagcagctgccatggcggggttgctcctgatgatcaccgtgtcctcgagctgggagagtatgctgctcaccctgaccactcgccttctgatctggacacactcctgcttgttctggcgaaccgtctccacggcctgcctgattttgagcgctaattccgcgatgtgcctcacgctgcccaatgaatcagccat
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| CDS seq | atggctgattcattgggcagcgtgaggcacatcgcggaattagcgctcaaaatcaggcaggccgtggagacggttcgccagaacaagcaggagtgtgtccagatcagaaggcgagtggtcagggtgagcagcatactctcccagctcgaggacacggtgatcatcaggagcaaccccgccatggcagctgctctggaggagctcgactcgacgctccgccacgcccacacgctcatcgcggcgtgccaggagaggaacatcgtgtgcctcttctgcgcggccactgctctttccaagaagttgcgccgggtgcaagatgacatctcggatcagatgatggagggaatgcttgcaacgagtgttcatgaagtaacaacaacctacaaagtgacaacaaagctagcatga
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| Protein seq | MADSLGSVRHIAELALKIRQAVETVRQNKQECVQIRRRVVRVSSILSQLEDTVIIRSNPAMAAALEELDSTLRHAHTLIAACQERNIVCLFCAATALSKKLRRVQDDISDQMMEGMLATSVHEVTTTYKVTTKLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0008260 | OsKeNa_12g0008260.01 | Chr12 | 7737455 | 7739049 | - | NAM | ||
| CDS seq | atggctgattcattgggcagcgtgaggcacatcgcggaattagcgctcaaaatcaggcaggccgtggagacggttcgccagaacaagcaggagtgtgtccagatcagaaggcgagtggtcagggtgagcagcatactctcccagctcgaggacacggtgatcatcaggagcaaccccgccatggcagctgctctggaggagctcgactcgacgctccgccacgcccacacgctcatcgcggcgtgccaggagaggaacatcgtgtgcctcttctgcgcggccactgctctttccaagaagttgcgccgggtgcaagatgacatctcggatcagatgatggagggaatgcttgcaacgagtgttcatgaagtaacaacaacctacaaagtgacaacaaagctagcatga
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| Protein seq | MADSLGSVRHIAELALKIRQAVETVRQNKQECVQIRRRVVRVSSILSQLEDTVIIRSNPAMAAALEELDSTLRHAHTLIAACQERNIVCLFCAATALSKKLRRVQDDISDQMMEGMLATSVHEVTTTYKVTTKLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0249900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g14670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0249900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008210 | SBH | 0.318773 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008310 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008300 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008130 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0120200 | RBH | 0 | 0.0473055 | 0.025845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008100 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0126800 | SBH | 0.0593465 | 2.746788 | 0.265477 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008140 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008180 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008060 | SBH | 0.0 | 0.0 | 0.0 |
