Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0004540 | OGI:12008780 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:3409348-3411213 | ||||||||
| Gene Symbol | OsFbox646, Os_F0134 | ||||||||||
| DNA seq | cgcagccggtgcccggtgaggtgagttgtctgataccagtgaaaagttttttattattattattttcggtagctttctcattgataattttgggtaaatttcatcgctgcctcaacaagattcgattcaccccttcctcgaaagaaagaaagaaagaaagaaacgttattcccctttgatagagttttagcaatccgtctgtaaattgtttgctctgcatcttttgctaacccaacggatataagaaatcatggtttgatttctattgaaaccaccgctgcctgataagtccgaacccgatttaataaaatgtctagtccgaaactaaataggatcgaagtcgagtttcccgattagtacagacaccgaatactccattattatattatgatgtgcaaagccataactgattatgcttaattattttctgcagtttgatattgttggcatgatggcgaaacgatgcacggacatcttgctagctccccggccacgaaagacgatgcggattgatatcaattcttgcagatcgaggttcttgctcccttacatcccggatgaggtgatgttcgacgttctgttacgactgccatccaagtctctcatgcggtttaagtccgtgtgcaaggcttggcacgccatgatatcaagcccaattttcatcaacgctcacctcgagtggtcaaagctaaagccatcatcactgctcatggctcctggcttttaccagaagcagaagaacggtcagaatattgcctttctgatgggcctctataagtaccagggtggtaataataatgtagtgcatctgcatgattttccacgtgattttccgcaggtattggatacatggactcgccctgtgcactgcgatggtttgctccttgtttccaacatgagcaaaaaaatgattatctacaacccatcaacaagagagattgtttccctgccaaaagggagccgtaaccttcataagggcacagggattggatttgggtttgaccctcgcagcagcaagtataaagtggcgagagttttttatcaaagggatgacaaaacatcaatgttggtctgtaagtttgaagtgcttaccctgggcactaTtaatgtatggaggcaaactgaagacccaccttatccaattggtaagtcgactccagttcatgtgaaaggcgctatctactggatggtttctcgaacatcactttgcccagatccacccaacacacttgttcgattctgtttgactgatgagaagtttagtctgtttccatgcccatgcaatgtaaagccttcctgtttgaccggattGggggatgaattgtactgcagctattttttcagtcaaccactccaactggagatttggggttgtagtgttgttgggcagaaacctgaatggactcgacgctgcgctttacagattccacctgatgttattaagcggcctgtagcaagtcctttggttgtctttcatggaaaaattttgctgttggcgttgaaaaaggtctacaagtatgacatccaagcctgtaaattggagaaaatacctttagtggttgaagacttcatgtgctatgaccgcgaaaataatatgtaccagacatattcgaagaaggaagtaatggatttccatctatttaattatgttgagagtctagtttcgattagagaattttgagaaatcattcttctcgtgttgtgttgaggagtgatctaaggttacagtagatgcctttctttctgagtagtgtcaaccatagacaattcttaatgagttggatgtatgctttctttttcgaagctaagtggtttaacagtaacaatgtattgttcattctagtattatgaattttcctttactct
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| CDS seq | atgatggcgaaacgatgcacggacatcttgctagctccccggccacgaaagacgatgcggattgatatcaattcttgcagatcgaggttcttgctcccttacatcccggatgaggtgatgttcgacgttctgttacgactgccatccaagtctctcatgcggtttaagtccgtgtgcaaggcttggcacgccatgatatcaagcccaattttcatcaacgctcacctcgagtggtcaaagctaaagccatcatcactgctcatggctcctggcttttaccagaagcagaagaacggtcagaatattgcctttctgatgggcctctataagtaccagggtggtaataataatgtagtgcatctgcatgattttccacgtgattttccgcaggtattggatacatggactcgccctgtgcactgcgatggtttgctccttgtttccaacatgagcaaaaaaatgattatctacaacccatcaacaagagagattgtttccctgccaaaagggagccgtaaccttcataagggcacagggattggatttgggtttgaccctcgcagcagcaagtataaagtggcgagagttttttatcaaagggatgacaaaacatcaatgttggtctgtaagtttgaagtgcttaccctgggcactaTtaatgtatggaggcaaactgaagacccaccttatccaattggtaagtcgactccagttcatgtgaaaggcgctatctactggatggtttctcgaacatcactttgcccagatccacccaacacacttgttcgattctgtttgactgatgagaagtttagtctgtttccatgcccatgcaatgtaaagccttcctgtttgaccggattGggggatgaattgtactgcagctattttttcagtcaaccactccaactggagatttggggttgtagtgttgttgggcagaaacctgaatggactcgacgctgcgctttacagattccacctgatgttattaagcggcctgtagcaagtcctttggttgtctttcatggaaaaattttgctgttggcgttgaaaaaggtctacaagtatgacatccaagcctgtaaattggagaaaatacctttagtggttgaagacttcatgtgctatgaccgcgaaaataatatgtaccagacatattcgaagaaggaagtaatggatttccatctatttaattatgttgagagtctagtttcgattagagaattttga
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| Protein seq | MMAKRCTDILLAPRPRKTMRIDINSCRSRFLLPYIPDEVMFDVLLRLPSKSLMRFKSVCKAWHAMISSPIFINAHLEWSKLKPSSLLMAPGFYQKQKNGQNIAFLMGLYKYQGGNNNVVHLHDFPRDFPQVLDTWTRPVHCDGLLLVSNMSKKMIIYNPSTREIVSLPKGSRNLHKGTGIGFGFDPRSSKYKVARVFYQRDDKTSMLVCKFEVLTLGTINVWRQTEDPPYPIGKSTPVHVKGAIYWMVSRTSLCPDPPNTLVRFCLTDEKFSLFPCPCNVKPSCLTGLGDELYCSYFFSQPLQLEIWGCSVVGQKPEWTRRCALQIPPDVIKRPVASPLVVFHGKILLLALKKVYKYDIQACKLEKIPLVVEDFMCYDRENNMYQTYSKKEVMDFHLFNYVESLVSIREF |
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| Function | Putative F-box protein At3g52320 [UniProtKB/Swiss-Prot:Q9FT50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0004540 | OsKeNa_12g0004540.01 | Chr12 | 3409348 | 3411213 | + | NAM | ||
| CDS seq | atgatggcgaaacgatgcacggacatcttgctagctccccggccacgaaagacgatgcggattgatatcaattcttgcagatcgaggttcttgctcccttacatcccggatgaggtgatgttcgacgttctgttacgactgccatccaagtctctcatgcggtttaagtccgtgtgcaaggcttggcacgccatgatatcaagcccaattttcatcaacgctcacctcgagtggtcaaagctaaagccatcatcactgctcatggctcctggcttttaccagaagcagaagaacggtcagaatattgcctttctgatgggcctctataagtaccagggtggtaataataatgtagtgcatctgcatgattttccacgtgattttccgcaggtattggatacatggactcgccctgtgcactgcgatggtttgctccttgtttccaacatgagcaaaaaaatgattatctacaacccatcaacaagagagattgtttccctgccaaaagggagccgtaaccttcataagggcacagggattggatttgggtttgaccctcgcagcagcaagtataaagtggcgagagttttttatcaaagggatgacaaaacatcaatgttggtctgtaagtttgaagtgcttaccctgggcactaTtaatgtatggaggcaaactgaagacccaccttatccaattggtaagtcgactccagttcatgtgaaaggcgctatctactggatggtttctcgaacatcactttgcccagatccacccaacacacttgttcgattctgtttgactgatgagaagtttagtctgtttccatgcccatgcaatgtaaagccttcctgtttgaccggattGggggatgaattgtactgcagctattttttcagtcaaccactccaactggagatttggggttgtagtgttgttgggcagaaacctgaatggactcgacgctgcgctttacagattccacctgatgttattaagcggcctgtagcaagtcctttggttgtctttcatggaaaaattttgctgttggcgttgaaaaaggtctacaagtatgacatccaagcctgtaaattggagaaaatacctttagtggttgaagacttcatgtgctatgaccgcgaaaataatatgtaccagacatattcgaagaaggaagtaatggatttccatctatttaattatgttgagagtctagtttcgattagagaattttga
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| Protein seq | MMAKRCTDILLAPRPRKTMRIDINSCRSRFLLPYIPDEVMFDVLLRLPSKSLMRFKSVCKAWHAMISSPIFINAHLEWSKLKPSSLLMAPGFYQKQKNGQNIAFLMGLYKYQGGNNNVVHLHDFPRDFPQVLDTWTRPVHCDGLLLVSNMSKKMIIYNPSTREIVSLPKGSRNLHKGTGIGFGFDPRSSKYKVARVFYQRDDKTSMLVCKFEVLTLGTINVWRQTEDPPYPIGKSTPVHVKGAIYWMVSRTSLCPDPPNTLVRFCLTDEKFSLFPCPCNVKPSCLTGLGDELYCSYFFSQPLQLEIWGCSVVGQKPEWTRRCALQIPPDVIKRPVASPLVVFHGKILLLALKKVYKYDIQACKLEKIPLVVEDFMCYDRENNMYQTYSKKEVMDFHLFNYVESLVSIREF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.704090 | 2.186742 | 1.082602 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0164300 | RBH | 1.065005 | 0.678544 | 1.722921 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06740 | RBH | 0.794538 | 0.364813 | 0.304614 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0164300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004290 | RBH | 0.344575 | 3.173073 | 1.417166 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004520 | RBH | 1.825522 | 0.0 | 4.133290 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004360 | RBH | 0.284763 | 0.070414 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004560 | RBH | 9.978178 | 6.566394 | 4.908771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0056100 | RBH | 5.775084 | 6.0831965 | 2.5609185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004550 | RBH | 0.541321 | 0.0 | 0.339284 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0060300 | RBH | 4.9215195 | 5.3098255 | 4.7770735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004330 | RBH | 0.401183 | 0.073309 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004560 | RBH | 0.256198 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004560 | RBH | 7.193794 | 1.223124 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004510 | RBH | 1.247718 | 0.0 | 0.679441 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004450 | RBH | 0.529403 | 1.681831 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004370 | RBH | 0.801954 | 0.0 | 0.643609 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004570 | RBH | 2.429087 | 6.972659 | 3.184458 |
