Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0002030 | OGI:12003970 | 13/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:1399805-1405080 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatacgaatcggtttcggatttgttgccgcaaaaatcaaaataaaacccgggtggaggaggagggagaagatgaagcaaacgagagagatcgagcttgaggccgggtggaatcgcgaggggatgtcatggcgaagcggcgggcagagtccgagcttgagctggtggaggcggaagcggaagcggaggcggaggcggaggcggagaagaatgggaggcgagcagcaggtagtcaggacggggtgaatcgcgcgttcatcctcgagtgcagcaaacatagcgatggatcgatctacagcggcgacgatttttggcacagattttacaaggtcgccgatacccgagagagtaagttttaacttttaacttcttgcaaaccctagctttttcccctctccaccatgcatcacctaccatcctctcatctccttaattagttccttttcaattttaactttgcatcatctacaatcctctcatctgcccttaattagttccctttcaatttagcttcacttggtagcacctcagatcgatgctatttaattcatgctcttttaacttcaattttatactatattgctgtgtcacctaatttgttccccaggaggcgggcagcctcttgggtgcaatcaaagaagaggtcgcaatctggaaggaagcaggagtctttaaagaatagagatgcaatcccttttattttggttttgggagggcgctccggcatactccattcagtttcgacatcttcttgttggaattctaaacttgtaaatttgtacatcgtaaggaaatttggactgaggggtctttggtcagcacggcaaaataataataataataataaaatctaatttgttcttgtgtatgctcagtactatggaactgatgtcaaattaaaccctttttttcataacatatctgtctagcttgatgtcaaatttagacctttcataacataatctagttctaagtaacactagatattccttaagtactacttcaaaaaactcttaaaggcaccatctaggatatggtatatcttgctttgggtccatgatagtgtggagtttgctgttttaaaccttattcgtatctatttgtttctttcctgctcatttcaatattggggttaacaatctaacttctaatcatccactgatgtgtatggctgttcagctcgtatggaggcaatgatgctgtcaaacccaaccaattgccggccacacatgtgggcttgcaaggcgcacagtgtgcaattcatgatgcagatattctcgctcaagctatccaatatcactgctgctgttgatggcccagttcacttgtatggatactttgctgtccgggatcatttggacccgctacgcaactacatcttcaaccgcaccagggatgaccctttcatcatggggcaagacaatggcgttgattcggataattcattgataccaatgtcaggccccaagagaggcattggaaaccaagttcgtgtgctcatcgagttcgacatgaagatcaagaacggagagacacaagacgatgattttcagctcatcgatggtgccattatctgcagcgaattcgtgcttcccgatagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagccctttttcacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatgtcaatggcttgagcttatctttatattcttataccagtcgaatccctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaatagggtagttgctgtggtggagaatacacctttgtttttaatcttcagggctgttcatagggatggctcggattatgatatccctaaatactgtccattggtcttcaaggttgatcagggggatggctcgtatcgtgtctctgaatattgtccattcaaagctagaagacatggatatgacatgaaagagcttaaacttggtggcgcccgtgtactgttgaaggtgtcttggtcaactttgaagtgattttgaatattcctggggtatacataatctatgctaagcagaaatagcgatatttctgtgtattgactagtaggcaaatgtttgggccttattttgagtacatatttaagttttttatttgttgtagaagttcgacaggtgaaggatgccacactcttatctgttcttatttattgcatattaatgcagattaaatttggtattgctacctgaatttaccaaatgttttggatgcaactcttgtggaattctaatgtttaacttacacaatatactcttgcaagagtgccgaagagaaaagggatcatccattaatttgttccgtcattgtgtctgcgtgtgaaatagtgatgcttatgttaggtaatactgatctgcttctggggcgcgttttgttgggaaaattgaagatatgctactcccctggaatcattttcaggacgtcactccttcagcttgactttgctaaaatggattgtttgcatgataataaataatagatgaatcttcggtgtagcatcgcattgatgaataaaacttttttttgccatctgtttgtaatgatatttttttcctctttgtattttggtcggccaagtgtccgaacagtttggcatcttgtaactaaacaagttctactccttaatacaaagacgtgtgaacctttcgcatgttacctaaaacaaaaatgagtccaccaacaacattacaaaaatgagaccaccaacagcattacagcaagcagataatgagcatgagggggtgtagaaaagaaaaaaaaagaatttatgaaagcatcgcttgattactgaattattgccaggacaaccgttgaagaagcaaaccgcagaagctgcaactccagtccagcggtttactaacaggcaacagacatccaatcatcttatgtttactgaaatagtagtaaagtggtgagggattgccaatgccaatctgccagacaataaaaactgacagggacagagactggagttactaagtgttcagctcagtttactgaaccagctatctaagagattaagcaaggctaagtcagagaggaactgtgtaatgaatgagatagcgctatctaatcagtttactgtctgctgctgctgctgctgctaggccaagacgaggagggggttgtgtctccttgcttaatgagctccaagttgatcttttgggccaagttgagtctcatggctgcgacgctctcagcacttacttgatccatcaccgactcaaaccagcagggcgccgcttcttctgtccttggatgcttcttccaccaccggcagatggccagggcaactgccaacaggtagacgccgcaatcgtacccattgctctgctgcggtgtcgggcctgagatgggcggtccctgcggtggcgccgggagcagtggccggagcgcgtcggcgaggcgggttgccgccggcagattggcgccgtccatactgtcgtggtggacgaagcggccggtgatgttgtccagcacaagaagactccagtgtgacccatcgtcggccttgtccaacctctcgctgttgttcaccgggaataacaccatcctgcgagatgccagtaacagtgcctgggctgtatcagcgacagtctcaggctcatagtcttgcaagttcgccagcagagaagccacggatggcgacaccaggagaaggctctcatcacccaactcggttgtcatgtgcgccatcacaaagttaatcacgccatctaataggaagtttggggcagcaaggctcgcgacatcggagctgaacagagttgcgtcacggtgactcattacgctctttcctcttgtcctcgtcgtcgtcgtcgtcggagacttatgcagggattgtttcttcacagtgaggccgaggaactgcaactgatgttccactgtatcacattgctgctcctgcaaagtacaaaaccatgtattaacaacctagttagtttgataagtaatcaaccgacatggagattagtgaactttcctcagtattaatcaaagagacagagatggactgcaatacatacacataacaataacagtctgcctttcttcaaaaacaaaaacagtctgcaagcgatcaaaaaggacaagtattcacattactcgcattgcgcaaaagaagataaatccaaaattttggcctcttacaattcattaggcatgatgaatttgtagttaagtaaatacaagttacaaatactatggactgtaaatttggagtataagcacagtaagaaattatgaattaggagaaacatccatttctcctacaccattccatctctctaaacttccaatgaaagtgacagtgacctattcttgtgccctctctgtcaaacatgagcagaccttcaaaatgacaaagagcaaacaaaaacactaagagaaagcaatgcgttgacctctcaaatcctcagaaatctccaaaccgagaaaacattagtcaatgtgaacaaacattggatatatgagatgactaaagaagttgggaatgggggaagcaacagacaatgatacatttgcatgattgcacgcacaacgaattgcacacatgggagatttaagacctagtacaaatctaaatgtgatctagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagcccttttccacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatggcaatggcttcagcttatctttatattcctatattggtcaaattcctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaataggtttgtagttgctgtggtggagaatacacctttgtttttaatcttcaaggctgttcatagggatggctcggattatgatatccctgaatactgtccattggtcttcaaggttgatcagggagatggctcgtatcgtgtctctgaaaattgtccattcaaagctagaagacatggatatgacatgaaagagcttaagcttggtggcccccgtgtactgctgaaggtgtcttggtcaactttgaagtgattttgaaaataatgatattcctgtgtgttggctagttgtcaaatgtttgaccctatgttcagtacatatttaatttttttatttgtttaacagaataacagtcgaagaatgccacgctctcatctgtaagatatggttctataaacagatga
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| CDS seq | atggcgaagcggcgggcagagtccgagcttgagctggtggaggcggaagcggaagcggaggcggaggcggaggcggagaagaatgggaggcgagcagcaggtagtcaggacggggtgaatcgcgcgttcatcctcgagtgcagcaaacatagcgatggatcgatctacagcggcgacgatttttggcacagattttacaaggtcgccgatacccgagagactcgtatggaggcaatgatgctgtcaaacccaaccaattgccggccacacatgtgggcttgcaaggcgcacagtgtgcaattcatgatgcagatattctcgctcaagctatccaatatcactgctgctgttgatggcccagttcacttgtatggatactttgctgtccgggatcatttggacccgctacgcaactacatcttcaaccgcaccagggatgaccctttcatcatggggcaagacaatggcgttgattcggataattcattgataccaatgtcaggccccaagagaggcattggaaaccaagttcgtgtgctcatcgagttcgacatgaagatcaagaacggagagacacaagacgatgattttcagctcatcgatggtgccattatctgcagcgaattcgtgcttcccgatagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagccctttttcacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatgtcaatggcttgagcttatctttatattcttataccagtcgaatccctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaatagggtagttgctgtggtggagaatacacctttgtttttaatcttcagggctgttcatagggatggctcggattatgatatccctaaatactgtccattggtcttcaaggttgatcagggggatggctcgtatcgtgtctctgaatattgtccattcaaagctagaagacatggatatgacatgaaagagcttaaacttggtggcgcccgtgtactgttgaagaagttcgacagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagcccttttccacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatggcaatggcttcagcttatctttatattcctatattggtcaaattcctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaataggtttgtagttgctgtggtggagaatacacctttgtttttaatcttcaaggctgttcatagggatggctcggattatgatatccctgaatactgtccattggtcttcaaggttgatcagggagatggctcgtatcgtgtctctgaaaattgtccattcaaagctagaagacatggatatgacatgaaagagcttaagcttggtggcccccgtgtactgctgaagtcgaagaatgccacgctctcatctgtaagatatggttctataaacagatga
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| Protein seq | MAKRRAESELELVEAEAEAEAEAEAEKNGRRAAGSQDGVNRAFILECSKHSDGSIYSGDDFWHRFYKVADTRETRMEAMMLSNPTNCRPHMWACKAHSVQFMMQIFSLKLSNITAAVDGPVHLYGYFAVRDHLDPLRNYIFNRTRDDPFIMGQDNGVDSDNSLIPMSGPKRGIGNQVRVLIEFDMKIKNGETQDDDFQLIDGAIICSEFVLPDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHVNGLSLSLYSYTSRIPEKIRLFDGVISKPCDLNRVVAVVENTPLFLIFRAVHRDGSDYDIPKYCPLVFKVDQGDGSYRVSEYCPFKARRHGYDMKELKLGGARVLLKKFDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHGNGFSLSLYSYIGQIPEKIRLFDGVISKPCDLNRFVVAVVENTPLFLIFKAVHRDGSDYDIPEYCPLVFKVDQGDGSYRVSENCPFKARRHGYDMKELKLGGPRVLLKSKNATLSSVRYGSINR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0002030 | OsKeNa_12g0002030.01 | Chr12 | 1399805 | 1405080 | + | NAM | ||
| CDS seq | atggcgaagcggcgggcagagtccgagcttgagctggtggaggcggaagcggaagcggaggcggaggcggaggcggagaagaatgggaggcgagcagcaggtagtcaggacggggtgaatcgcgcgttcatcctcgagtgcagcaaacatagcgatggatcgatctacagcggcgacgatttttggcacagattttacaaggtcgccgatacccgagagactcgtatggaggcaatgatgctgtcaaacccaaccaattgccggccacacatgtgggcttgcaaggcgcacagtgtgcaattcatgatgcagatattctcgctcaagctatccaatatcactgctgctgttgatggcccagttcacttgtatggatactttgctgtccgggatcatttggacccgctacgcaactacatcttcaaccgcaccagggatgaccctttcatcatggggcaagacaatggcgttgattcggataattcattgataccaatgtcaggccccaagagaggcattggaaaccaagttcgtgtgctcatcgagttcgacatgaagatcaagaacggagagacacaagacgatgattttcagctcatcgatggtgccattatctgcagcgaattcgtgcttcccgatagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagccctttttcacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatgtcaatggcttgagcttatctttatattcttataccagtcgaatccctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaatagggtagttgctgtggtggagaatacacctttgtttttaatcttcagggctgttcatagggatggctcggattatgatatccctaaatactgtccattggtcttcaaggttgatcagggggatggctcgtatcgtgtctctgaatattgtccattcaaagctagaagacatggatatgacatgaaagagcttaaacttggtggcgcccgtgtactgttgaagaagttcgacagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagcccttttccacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatggcaatggcttcagcttatctttatattcctatattggtcaaattcctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaataggtttgtagttgctgtggtggagaatacacctttgtttttaatcttcaaggctgttcatagggatggctcggattatgatatccctgaatactgtccattggtcttcaaggttgatcagggagatggctcgtatcgtgtctctgaaaattgtccattcaaagctagaagacatggatatgacatgaaagagcttaagcttggtggcccccgtgtactgctgaagtcgaagaatgccacgctctcatctgtaagatatggttctataaacagatga
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| Protein seq | MAKRRAESELELVEAEAEAEAEAEAEKNGRRAAGSQDGVNRAFILECSKHSDGSIYSGDDFWHRFYKVADTRETRMEAMMLSNPTNCRPHMWACKAHSVQFMMQIFSLKLSNITAAVDGPVHLYGYFAVRDHLDPLRNYIFNRTRDDPFIMGQDNGVDSDNSLIPMSGPKRGIGNQVRVLIEFDMKIKNGETQDDDFQLIDGAIICSEFVLPDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHVNGLSLSLYSYTSRIPEKIRLFDGVISKPCDLNRVVAVVENTPLFLIFRAVHRDGSDYDIPKYCPLVFKVDQGDGSYRVSEYCPFKARRHGYDMKELKLGGARVLLKKFDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHGNGFSLSLYSYIGQIPEKIRLFDGVISKPCDLNRFVVAVVENTPLFLIFKAVHRDGSDYDIPEYCPLVFKVDQGDGSYRVSENCPFKARRHGYDMKELKLGGPRVLLKSKNATLSSVRYGSINR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.710580 | 0.640843 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0127500 | RBH | 0.701473 | 1.049095 | 1.628171 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03400 | RBH | 0.484661 | 0.676243 | 0.412025 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0127500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001820 | RBH | 0.221583 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002040 | RBH | 0.0 | 1.765710 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002030 | RBH | 0.000000 | 1.317649 | 1.563947 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001830 | RBH | 0.063221 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001960 | RBH | 1.337971 | 0.0 | 1.665208 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0024200 | RBH | 1.307989 | 3.018334 | 2.2879 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001950 | RBH | 0.114368 | 0.142197 | 0.292680 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0025300 | RBH | 1.3757925 | 3.063727 | 5.201092 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001820 | RBH | 0.055526 | 0.162072 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001940 | RBH | 0.393727 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002010 | SBH | 0.075207 | 2.299615 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001960 | SBH | 0.0 | 0.0 | 0.518315 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001920 | SBH | 0.0 | 0.0 | 3.724020 |
