Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0000110 | OGI:11000120 | 3/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:79923-86715 | ||||||||
| Gene Symbol | OsCCT40 | ||||||||||
| DNA seq | ATGGTGGGCTGGCAACAGACTATCGAATTCGAGCTCGGCAACGTGTACGTGGCTAAAAAACAAACAAGATTTAAACTTATTACCTCGGTGACAATTGAACTAGCCAGCTACATGCATGATTATTCACGAGAAACGTACTAAGCAGCTGGTTTTAGCATTTTCCATTTTATATATGTCTATAAAAGCTTGCCAAAAGCCAACAGTAGACACACAAGTAATGAATTGAAGCAAAGAGATCGATCGATCAATCGAGAGAGAACAGCAGCATGCACCATTCGAGCCGGTCTTCGTCTTGGCATGGCATCATCAGCTCGCCGCCATTCCATTTCCTGCAGCTGCAGGGGAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGAAAGGTACCGGAGCAAGCGCAGCCACCGCAACTTCGGCAAGAGGATAACCGTAAGTATTTCATTACTACTGGTTGAGCAGTTCCACTTGTTAGCCTGAAGATAATCTTGTGCATTTGCAATAATTTGTTTGCTTTCAGTTAGTAAGTTTGAATTCTTAGGCATAGGATGCTGCATGCATTGTAACGGCTGTCCCAGGAAGTTTCAGTCTTGGGCAGCTGAGCTTTTCCCGTTTTTCTGTTAGTAGCGATGGAACTGGATCTGGAGCGTGGGATGGCGCGTTCAGTCATTTGGATCCGGTGAAATCGGTGTTTGTTATGCATGTAACAACCTCACAAGATGAGGGAATAAAATTGAAGAGAAATCAGAAAAGCTGCAGGTGGTTACGCAGCACCAAAAAAAAAAAAAAACTCTGTTCTTCGTTTCAGTTCTTCAGTTACTGTTCACGTCTGAAAAATATTCAGAGATTGTAGGTTAGCCACTGATCGAGAGCTAAGCGAGGGGTTTTTGCTGACAATTGGTATTAGAGCGAGGTTCCGGTTCCGCTTTTGATGTCGTCGGATGGGCGCTACACTCCGCCACCGAGGCGTGGTGGAAGTGGCGGAAGCAGCGGCGAGCAGGGGAGCGGCAGCGCAAACGGCGCGACGATGCCGCTGGTGCCGCTGTCCAGAGATGGCAGCGCGACTGCGAGGCTGCCGATGCTGACGAGGACGAACTACCCCGACTGGGCACTGCTGATGCGAGTGAGTCTTCAGGCACAAGGGCTGTGGACGGCCATTGACCCCGGCTACGCGGAGAACCGCGAGGATCACGTGGCTCTCTCTGCCATACTCCAGGCCGTTCCGCGCGAGATGTTGCGCGGGCTGGCGAAGCACGACACGGCGAAGGCGGCGTGGGATGCCATCAAGACCATGCGGGTCGGTGTCGACCGCGTGCGTGAGGCCAAGGAGCAAGGGTTTCGCCGACAATTTGAATCGATGCGGTTTAAGGAGGGAGAGAGGCCGGAGGAGTTTGCGATGCGGCTCACTGCCGTCGTCGCGGACATCCGTGACATGGGCGGAGTCATGGAGGACGAACATGTTAACAAGAAGTTGCTGCGTGTTGTCCCTAAGAAGTACAAGCCGGTGGCAATCTCACTCGAGCAACTCCTCGATATCAAGACCATGGCCTTGGAGGAGCTCGTCGGGCGGTTGTCCATGATCGATTCGTACAGCGACGACGAGGAGGTGAGCGGCGGCGGCAAGCTGTACCTCACCGAAGAGCAGTGGGAGGCACGCGTGAAGCAGCGGGAGCAGGAGGGCTCTGGCAGTGGTGGCAAGGGCCGCGGCGGGACTGGTGGGCAAAACCGAAAGACGAAAGCTGCCGGACCGTCCAAGGGCAAGGAGGCGGCCATTGGCGGAAGCGGTAGCCGGGATATTTCAAAGGTGAAATGTTTCAATTGTGATGAATTTGGTCACTATTCACGGCAATGTCGCAAGCCGCGGCGCCAACGTCGTGCAGAGGCAAACTTGGTGCAGGGAGAAGAAGAGCCAACTCTGCTCATGGCGCATGTCATGGGGGTGTCGCTCGCCGGGGAAGCGACACTAGACCGAACACCTAGCGTGCAAGAGGTACACCTCACTGAGAAGAAGGTCAATCTTGACCATGATGATGTCGGTGAGGAAGACAAGGCCGGTGACTGGTTCCTGGACACGGGAGCCACAAACCACATGACCGGGGCGCGCACGGCGTTCGCCAAACTCGACACCGGCGTCGTCGGCACGGTGAGGTTTGGAAATGGCTCAGTAATTGAAATCCGGGGACGCGGGACAGTGGTGTTCAGGTGTAAGAATGGAGATCATCGTTCGCTGGAGGGGGTGTACTACATCCCTAAACCGCGCAAGAACATTGTGAGTGTCGGCCGGCTCGACGAGCGCGGCTACGACTCACACATAAGGCACGACGTCTTCACGCTGCACGACCCGGATGGTTTGCTCCTGGCCAAGGTAAATCGGGATTCCAGCTATCTATACGTACTTAAGCTGAACATGGCTAGTCCGATTTGTATGGCAACAAGTGGTGGCGAGGCGGCGTGGCGCTGGCACGCACGTCTCGGACACCTGAACTTCCAGGCACTTAGGAGGATGGCGCACGGTGACATGGTTCGTGGGCTCCCACGGATTGATCATGCGGACGAGCTATGCGACGGGTGCCTTGCAGGCAAGCAGCGTCACGCGCCATTCCCGGCGGAGTCGAAGTTCAGAGCGCAAACGGTGCTCGAACTAGTGCATGGCGACCTCTGTGGTCCGATCTTGCCGGCGACGCCGGGCGGTCGGAAATATTTTCTCCTGCTGGTTGATGACATGAGTCGTCACATGTGGATTCGGCTCCTCACTTCCAAGCACGAGGCAGCGACAGCGATCAAACAGTTTCAGGCCGGTGTGGAGACGGAGACCGGTCATAAGCTGATGGCGCTGCGTACTGATCGCGAGGGTGAATTCACCTCCGTGGAGTTCATGGAGTATTGCGCCGATCATGGTGTGAAGCGCCAGCTCACGGCGCCTTACTCGCCATAGCAGAACGGTGTCGTGGAGCGCCGGAATCAAACTGTGGTGGCCACGGCGCGTTCCATAATGAAGGCTGCCGGAATGCCAGCTCACTTCTGGGGAGAGGCAGTGGTGGCGGCGGTGTACGTACTCAATCGATCATTGACTAAAAGTCTTGATGGGGTGACGCCGTATGAAGCGTGGCATGGTCGCCGACCTACTGTCGAACACCTGCGTGTGTTTGGGTGTGTGGGCTATGTTAAGACGGCCAAGCCAAACTTGAGGAAGCTCGACGACCGTGGCACAAGGATGGTCTTCATTGGTTATGAGCAGGGGTCGAAGGCCTACAGGATGTACGATCCGGTGGCGCGGCGCGTGTGCGTGTCGCGAGACGTCGTGTTTGACGAGACGACGTTCTGGAGCTGGAGCGGCTGCGAGGAGCATGAAGGGGATGCAGACGCTTATGTGGAGTTCTCGGTTGAAAACTACACAACGCCGGTTGATGTGAACCACAGTTCAGATGCGGCGACATCTCAAGCTACCGAGGATCCATCGTCGATCTCGCCCAATTCGGTGGCGACGGTGACATCTGAAAATGCACTGGATACCCAAGAAACAGCAGTAAGTCTGCCTACTGGAATTGAATTCTGCTCTCCTCCAAGCAATGCAAGCGAGGGCACTGATGAGGCGCCCAGACGATACAAGACGGTGGCAAACACGCTCGCCACTACGACGCCCATCCTCGATTTTGACTACAGTGATGAACTGATGATGGCTGTTGAGGAACCAGCGAGCTTTCTGGAGGCTGAGAAGAAGGGTTGCTGGAGAAAAGCGATGATCGAAGAGATGAAATCCATTGAAGGAAATCATACGTGGTCACTGAGTGATCTGCCACCAAGCCACAAAGCCATTGGTCTGAAATGGGTGTTTAAAGTCAAGCGTGATGCTAAGGGCGAAATTCTGAAGTATAAAGCAAGATTGGTGGCAAAAGGATATGTACAACAACAAGGAGTAGATTTTGTTGAAGTGTTTGCTCCGGTGGCTAGAATGGAGACAGTGAGACTGCTTATTGCAATGGCTGCTCAGGAGGGGTGGCAGGTTCACCACATGGATGTCAAATCAGCGTTTCTGAATGGTGATTTGGAAGAGGATGTTTATGTGCAGCAGCCACTTGGGTTTGTTGTTGAGGGTGAGGAAGGAAAGGTGCTGAAACCGAAGAAAGCTCTCTATGGTCTAAGGCAGGCACCCCGAGCTTGGTATGCCAAGTTAGATTCTAGTCTTGCAGGTCTGAATTTTGTCAAGAGTGCAACTGAGAATGCAGTATACACTAGAGGGCATGGTGATTCAAGACTGGTAGTGGGTGTATATGTGGATGATCTTATCATTTCTGGGCCAAGCTTGAGTGAAATAATCAGGTTCAAGGAGCAGATGAAGACATTATTCAGCATGAGTGATCTCGGGTTGCTATCCTACTATCTTGGCATGGAAGTGAAACAAGGTGATGATGGGATCATGATGACTCAAGCTGGTTATGCAAGGAGAATCCTTGAGAAGGCTGGAATGGAAGGTTGTAATCCTTGTCAAGTTCCTATGGAACCTAGACTCAAGCTTAGCAAGGGAGAACCTGGGGAGTGTGTAGATGCAACAGAATTCAGAAGCTTGATTGGGAGTCTTCGCTACTTGGTAAATACCAGACCAGATTTGTGCTATTCAGTTGGATACGTCAGCCGTTTTATGGAGAATCCCACTTCTAAACACTGGGCTGCGATGAAGCATGTACTGCAGTATGTGGCTGGTACACAGAATTTTGGAATTCAGTTTAGCAGGAAGAAACAAGAAATTCCTCAGCTTATTGGCTATAGTGATAGTGATATGGCTGGGGATATCAATGATAGGAAGAGTACATCGGGTGTGCTGTTCAAATTGGGTGAAAGTTTACTCAGCTGGCAGTCACAGAAGCAAAAAATTGTAGCCCTGTCTTCATGTGAAGCAGAGTATGTGGCAGCCACAACTGGAGCCTGTCAGGGTGTGTGGCTAGCACGGCTAATTGGCGAGCTGCGAGCTTGTGATCCTCAGTGTGTAATTCTGAAGGTTGACAATAAATCTGCTATCAATCTTTGTAAAAATCCTGTGCTTCTTGATCGTAGCAAGCACATTGACACAAGGTTTCACTTCATTCGGGAATGTGTAGATCAGAAACGGATTGAAGTGGATTACATCAGAACTGAGGAGCAGATTGCAGATGTGCTGACAAAACCTCTCGGCAAGAATCGTTTTCTAGAACTGAGAAGGAAGTTGGGAATGGTTGAAGTATGAATGCATCAAGATTAGGGGGTGATTTGTTAGCCTGAAGATAATCTTGTGCATTTGCAATAATTTGTTTGCTTTCAGTTAGTAAGTTTGAATTCTTAGGCATAGGATGCTGCATGCATTGTAACGGCTGTCCCAGGAAGTTTCAGTCTTGGGCAGCTGAGCTTTTCCCCTTTTTCTGTTAGTAGCGATGGAACTGGATCTGGAGCGTGGGATGGCGCGTTCAGTCGTTTGGATCCGGTGAAATCAATGTTTGTTATGCATGTAACAACCTCACAAGATGAGGGAATAAAATTGAAGAGAAATCAGAAAAGCTGCAGGTGGTTACGCAGCACCAAAAAAAAAAAAACTCTGTTCTTCGTTTCAGTTCTTCAGTTACTGTTCACGTCTGAAAAATATTCAGAGATTGTAGGTTAGCCACTGATCGAGAGCTAAGCGAGGGGTTTTTGCTGACACCACTACCTAGTGTATATTATTTGATAGAAAAACCTCCTAATATATATCTCAGATAATTGTGGACCTTTAGATTGCTTTAAGATTCGTGCCAACACCTTAAACCCTAACCCTTCTTCCTTCCTCCTCACTCCCACTGCCGCCGCCATTGCCATTCCTCCTCCAATCCTCCCCCATCTCCTCCACTCAACTCGATGGCGCCGGTTGAACCTCCCCTCCTCCCCGCCTCTTCTTTTTCTCAAGCTGCTGGTGGTAAGGTGTCCCCATCTCGTCATCTTTCCCGTTTTCGGTGGCTTCCCGCTATATGAAACACCACCACCGTCCCCGTCTTCTAATGACTTGCTCCACTTTGTCCTCACTAGCAACATTATTGGCCCACCGCCCGCCACCGATTCTAGGGCTTCAGCGGTGCCATCGCCGCCTTGTCAACGAGTTGCCACTTGGTACCTCCCACAGTCATCCCTCTAAGACCGGATCAGATTTTTATCCCTCTTTGCCCTCCCTCCACCCCTAACCTCATCTAGAAACCTAAACCCTAACTCGTTGGGTTAGTGTTAGTCGTTGAAGTTCGTTGCTTGACCAGGCCCCGCCTATGCCTAAGAGGAGGAGGCCTGGCACGAAATGTGAAGCATATCAGAAGGTTAGAAATGTGCAAGATTTTGGTCCCAATTTTTATTATAACATGATTTAGGAATTCCGTAATTAGTACTGCATTAAGTATTCTTAATTGTAACATTGCAAAGCTGATCATGTGTACGTGCATTAATATTTGGTATTCATTGATCAGTACGCTTGCCGGAAGAGGCTTGCGGACGAGAGGGCGAGGGTGAAGGGCCGCTTCGTCTCCAGCTCCGGCGGCAACGATAATAATGCACCTGCACATGAGCTGCCGCCGTCGCTTGTCAATCTCAGCGATGGTGCTGCTGCTGCTGCAATCATCCCAACAAGAAGTGTGCCGGAGTGGTGGCCAGAAATGCAGGCGTCATTGGCCAGGGATGAGATGTGTGGCGGCGCGGGCATGAATCTCCACCTGTGCGACGCCAACGAGATGGAGCAGGTTGCTGCCTACGTTGGCGTCTCCTCCATGGACCTCTGCGCCTACCTGCACTGCTCATGGCCGCCCGTTTAG
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| CDS seq | ATGGTGGGCTGGCAACAGACTATCGAATTCGAGCTCGGCAACTACGCTTGCCGGAAGAGGCTTGCGGACGAGAGGGCGAGGGTGAAGGGCCGCTTCGTCTCCAGCTCCGGCGGCAACGATAATAATGCACCTGCACATGAGCTGCCGCCGTCGCTTGTCAATCTCAGCGATGGTGCTGCTGCTGCTGCAATCATCCCAACAAGAAGTGTGCCGGAGTGGTGGCCAGAAATGCAGGCGTCATTGGCCAGGGATGAGATGTGTGGCGGCGCGGGCATGAATCTCCACCTGTGCGACGCCAACGAGATGGAGCAGGTTGCTGCCTACGTTGGCGTCTCCTCCATGGACCTCTGCGCCTACCTGCACTGCTCATGGCCGCCCGTTTAG |
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| Protein seq | MVGWQQTIEFELGNYACRKRLADERARVKGRFVSSSGGNDNNAPAHELPPSLVNLSDGAAAAAIIPTRSVPEWWPEMQASLARDEMCGGAGMNLHLCDANEMEQVAAYVGVSSMDLCAYLHCSWPPV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0000110 | OsKeNa_12g0000110.01 | Chr12 | 79923 | 86715 | + | NAM | ||
| CDS seq | ATGGTGGGCTGGCAACAGACTATCGAATTCGAGCTCGGCAACTACGCTTGCCGGAAGAGGCTTGCGGACGAGAGGGCGAGGGTGAAGGGCCGCTTCGTCTCCAGCTCCGGCGGCAACGATAATAATGCACCTGCACATGAGCTGCCGCCGTCGCTTGTCAATCTCAGCGATGGTGCTGCTGCTGCTGCAATCATCCCAACAAGAAGTGTGCCGGAGTGGTGGCCAGAAATGCAGGCGTCATTGGCCAGGGATGAGATGTGTGGCGGCGCGGGCATGAATCTCCACCTGTGCGACGCCAACGAGATGGAGCAGGTTGCTGCCTACGTTGGCGTCTCCTCCATGGACCTCTGCGCCTACCTGCACTGCTCATGGCCGCCCGTTTAG
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| Protein seq | MVGWQQTIEFELGNYACRKRLADERARVKGRFVSSSGGNDNNAPAHELPPSLVNLSDGAAAAAIIPTRSVPEWWPEMQASLARDEMCGGAGMNLHLCDANEMEQVAAYVGVSSMDLCAYLHCSWPPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0101000 | SBH | 1.465329 | 1.124493 | 7.483492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0101000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000090 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000100 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000100 | SBH | 0.0 | 0.0 | 2.232995 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0001000 | SBH | 0 | 0.0263965 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000110 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0000900 | SBH | 3.161266 | 16.955758 | 12.217414 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000100 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000100 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000100 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000110 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
