Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0020880 | OGI:11010520 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:25843447-25846903 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaattgttcaatgctgaaaacatgctttggatggagatgatttcagtgtaaacatcctttatttttggtcgatccttgggtaaagtcacagtgcatctgaggccaagttcagccaattgcatgacagtgcacattgttagttctaccaattcatgatctctgtcttcacccaaataatctttggtaaaactaggttccaaaatctcagtaattttgtgtggaattgctgacaacaccattttatgaaggttcatgccatccgtaaacatctcatcagtaggatacatcccagtgatcatctcgagaagaataataccatagctgtagatgtcaccctcaaaggagattttgcaccccattgcatattctgcagtattttgcaattgatgaccatgagaaattcaatttgtccggtcagatgataaattgtacaaaatagagctacacagcatttctgtgaaaatagtactaatatatgatgcacgaataaaactgcattattagtaaatgctgacctggtgcaatatagccaattgatcctcttggtccagacatgctatatgaagtactactcgccattgaggagtcgttataaagaaactttgcaagcccaaagtcactaacatgagcaaccatttcatcatccaaaagaacattgcttggtttaagatcgcaatgaactaaaggaggactacattggttgtgaagataatctaatgcaacagctatatccatggctattgatagtctcgatgctaaactcaacggttcttttggaatttgtttgtttcgttttggatggagccagctttccaagtttccatttgccatgtgctcaagaatcagtgctttaaattcatttccagctggatcaaaagttgaacataggctaatcactcttataagatttctatgacggatgtttctgaatgcctcacattcagcgatgaaattatttggtgctccaaattggtcaagtctgaataccttaatagcaactatggatacatcagactcgatgtaacctctgtatactaatccaaatcttcctgaaccaataatatttgacgacgagaaaccgtatgttgctttaaacaaatcatggtaggagaaactcttgaactgcttcaatgattggttgatgggttgtctagccttgtatctcttcttcaaaaggatggtgataagacatgccatggtgatcataacaatagtagtaactggaacaaggatagctaaaatgtatggtgtcttcttcctttttgagggtgattccacacaaagtggtaattgtaacattggagaacttgcacacaacttgttatttccttggatgcacacagcgcttgaattgtcaaagactccacctttaggaacaggcccaataaggttattgaatgatagattcagaatctttaaagagctaaatgatccaaagaattctgggatttcaccagacagattattttgggaaagatccatctcaacgatgcctcttaagttgataagggaactagggatgtgtccatttaaaaaattggcctccaaatgcaatgattgcaaaagaaggcaattgccaagattggaagggatctcgcccgataaccggttgttcgaaatactgagggaatttaagttgatcaatttacctatctccattggtatgtctcctgtgagttggttattcgacaaatctaagcttatagaaagtgtggaaatggaaaagagctcctgtggaatgcttccatggaagctattagaagaaagatttagctgaaccaaatttttacaaccagctaaacttgtagggatgcgaccggttaattcattttctctcaaatgaagctcagtaagctgctctagtttccctattgattgtgggatttcaccagaaagtttattcttggataagcttaaaacagataggttttggagattctgaagtgtatcaggaatatgccctgtgagtccattcattcccaatgtaataacagtgaggccagtgagctttcctatttctgaaggtatatcaccagtcaattggtttgccattaagtgaagttcctctaagctttttgaaaggtttccaatagaaataggtatttttccctcaaagccattaaaatccaatgataatgattttaattggggacagtttgttagagaggataagaatgtccaatctccagcttgaagcatattagtacccaagtctagcattttcaactctgacaagagtcctaatgaaggaatatgaccactgaacaaattgcttcgaatatcaagagtttggaggtttgatgcattggccaacgaattagggatttggccttcaaactggtttcctcctattaccagttctgtgatgtttgaaagagtgctacccaagttggcaggaattgttccaacaagctggttattgttaaggataagatcagtaagagatgagatattgaacaatgctggaggaacaacgcctgacaagttattatactttaagtttaatactcgcaaattgacaattttacttaaactctctggaatgcttccttgcaggttattttgagatagaagcaagaatgaaagggaagaaatgtttccaagtgaaacagggatctctcctgtcagattgttttcagcaaggctaagtaactgcagtggcatggagctttttgagaaaggtgggatagagccagaaaggtgattgtgcgagagatcaatataagacagggtagtgctgttgaatatacttggagggattttaccactgatgctattgttgtttagattcacctctgtgagtgacctggtactccccaaaagttcaggaatactaccacttaggctgttgcttgagagcaatatgacagaaaggtttgcaagcaaaccaaacttggaagggatgctcccttgaagattgttgttgcttagaacaattttctgaagaaatgaacattcagcaagactctgcgggatctcaccttgtagggagttgctctgtaggctgatgacctcaaggcgagaacacgatgatatggagtgtgggataacaccatttagggagttcatgctaaggttgaggtatgtaagtcttgttaaaagaccaatatctggagaaatgtgtccattgagttggttgttgggcatgtgtattctggaaaggaaactgagctgagctatgcaaggaaaaatttgaccagtaaggttaagtgattcaagatctagtgatataacttgagatgcattatgtctgctacatgtcactccatgccaatcgcagaacatggaagagtcatttctccaggaagctaaggcacctgacggatcagagagctgagatttgaggctgagaagggcatccctatcggtatctgaattcaatgcaggaaatataatcaacaaacggactaagattaacaaaagcatcggccattcatgggttgcaaaatgactcat
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| CDS seq | atgagtcattttgcaacccatgaatggccgatgcttttgttaatcttagtccgtttgttgattatatttcctgcattgaattcagataccgatagggatgcccttctcagcctcaaatctcagctctctgatccgtcaggtgccttagcttcctggagaaatgactcttccatgttctgcgattggcatggagtgacatgtagcagacataatgcatctcaagttatatcactagatcttgaatcacttaaccttactggtcaaatttttccttgcatagctcagctcagtttcctttccagaatacacatgcccaacaaccaactcaatggacacatttctccagatattggtcttttaacaagacttacatacctcaaccttagcatgaactccctaaatggtgttatcccacactccatatcatcgtgttctcgccttgaggtcatcagcctacagagcaactccctacaaggtgagatcccgcagagtcttgctgaatgttcatttcttcagaaaattgttctaagcaacaacaatcttcaagggagcatcccttccaagtttggtttgcttgcaaacctttctgtcatattgctctcaagcaacagcctaagtggtagtattcctgaacttttggggagtaccaggtcactcacagaggtgaatctaaacaacaatagcatcagtggtaaaatccctccaagtatattcaacagcactaccctgtcttatattgatctctcgcacaatcacctttctggctctatcccacctttctcaaaaagctccatgccactgcagttacttagccttgctgaaaacaatctgacaggagagatccctgtttcacttggaaacatttcttccctttcattcttgcttctatctcaaaataacctgcaaggaagcattccagagagtttaagtaaaattgtcaatttgcgagtattaaacttaaagtataataacttgtcaggcgttgttcctccagcattgttcaatatctcatctcttactgatcttatccttaacaataaccagcttgttggaacaattcctgccaacttgggtagcactctttcaaacatcacagaactggtaataggaggaaaccagtttgaaggccaaatccctaattcgttggccaatgcatcaaacctccaaactcttgatattcgaagcaatttgttcagtggtcatattccttcattaggactcttgtcagagttgaaaatgctagacttgggtactaatatgcttcaagctggagattggacattcttatcctctctaacaaactgtccccaattaaaatcattatcattggattttaatggctttgagggaaaaatacctatttctattggaaacctttcaaaaagcttagaggaacttcacttaatggcaaaccaattgactggtgatataccttcagaaataggaaagctcactggcctcactgttattacattgggaatgaatggactcacagggcatattcctgatacacttcagaatctccaaaacctatctgttttaagcttatccaagaataaactttctggtgaaatcccacaatcaatagggaaactagagcagcttactgagcttcatttgagagaaaatgaattaaccggtcgcatccctacaagtttagctggttgtaaaaatttggttcagctaaatctttcttctaatagcttccatggaagcattccacaggagctcttttccatttccacactttctataagcttagatttgtcgaataaccaactcacaggagacataccaatggagataggtaaattgatcaacttaaattccctcagtatttcgaacaaccggttatcgggcgagatcccttccaatcttggcaattgccttcttttgcaatcattgcatttggaggccaattttttaaatggacacatccctagttcccttatcaacttaagaggcatcgttgagatggatctttcccaaaataatctgtctggtgaaatcccagaattctttggatcatttagctctttaaagattctgaatctatcattcaataaccttattgggcctgttcctaaaggtggagtctttgacaattcaagcgctgtgtgcatccaaggaaataacaagttgtgtgcaagttctccaatgttacaattaccactttgtgtggaatcaccctcaaaaaggaagaagacaccatacattttagctatccttgttccagttactactattgttatgatcaccatggcatgtcttatcaccatccttttgaagaagagatacaaggctagacaacccatcaaccaatcattgaagcagttcaagagtttctcctaccatgatttgtttaaagcaacatacggtttctcgtcgtcaaatattattggttcaggaagatttggattagtatacagaggttacatcgagtctgatgtatccatagttgctattaaggtattcagacttgaccaatttggagcaccaaataatttcatcgctgaatgtgaggcattcagaaacatccgtcatagaaatcttataagagtgattagcctatgttcaacttttgatccagctggaaatgaatttaaagcactgattcttgagcacatggcaaatggaaacttggaaagctggctccatccaaaacgaaacaaacaaattccaaaagaaccgttgagtttagcatcgagactatcaatagccatggatatagctgttgcattagattatcttcacaaccaatgtagtcctcctttagttcattgcgatcttaaaccaagcaatgttcttttggatgatgaaatggttgctcatgttagtgactttgggcttgcaaagtttctttataacgactcctcaatggcgagtagtacttcatatagcatgtctggaccaagaggatcaattggctatattgcaccagaatatgcaatggggtgcaaaatctcctttgagggtgacatctacagctatggtattattcttctcgagatgatcactgggatgtatcctactgatgagatgtttacggatggcatgaaccttcataaaatggtgttgtcagcaattccacacaaaattactgagattttggaacctagttttaccaaagattatttgggtgaagacagagatcatgaattggtagaactaacaatgtgcactgtcatgcaattggctgaacttggcctcagatgcactgtgactttacccaaggatcgaccaaaaataaaggatgtttacactgaaatcatctccatccaaagcatgttttcagcattgaacaattaa
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| Protein seq | MSHFATHEWPMLLLILVRLLIIFPALNSDTDRDALLSLKSQLSDPSGALASWRNDSSMFCDWHGVTCSRHNASQVISLDLESLNLTGQIFPCIAQLSFLSRIHMPNNQLNGHISPDIGLLTRLTYLNLSMNSLNGVIPHSISSCSRLEVISLQSNSLQGEIPQSLAECSFLQKIVLSNNNLQGSIPSKFGLLANLSVILLSSNSLSGSIPELLGSTRSLTEVNLNNNSISGKIPPSIFNSTTLSYIDLSHNHLSGSIPPFSKSSMPLQLLSLAENNLTGEIPVSLGNISSLSFLLLSQNNLQGSIPESLSKIVNLRVLNLKYNNLSGVVPPALFNISSLTDLILNNNQLVGTIPANLGSTLSNITELVIGGNQFEGQIPNSLANASNLQTLDIRSNLFSGHIPSLGLLSELKMLDLGTNMLQAGDWTFLSSLTNCPQLKSLSLDFNGFEGKIPISIGNLSKSLEELHLMANQLTGDIPSEIGKLTGLTVITLGMNGLTGHIPDTLQNLQNLSVLSLSKNKLSGEIPQSIGKLEQLTELHLRENELTGRIPTSLAGCKNLVQLNLSSNSFHGSIPQELFSISTLSISLDLSNNQLTGDIPMEIGKLINLNSLSISNNRLSGEIPSNLGNCLLLQSLHLEANFLNGHIPSSLINLRGIVEMDLSQNNLSGEIPEFFGSFSSLKILNLSFNNLIGPVPKGGVFDNSSAVCIQGNNKLCASSPMLQLPLCVESPSKRKKTPYILAILVPVTTIVMITMACLITILLKKRYKARQPINQSLKQFKSFSYHDLFKATYGFSSSNIIGSGRFGLVYRGYIESDVSIVAIKVFRLDQFGAPNNFIAECEAFRNIRHRNLIRVISLCSTFDPAGNEFKALILEHMANGNLESWLHPKRNKQIPKEPLSLASRLSIAMDIAVALDYLHNQCSPPLVHCDLKPSNVLLDDEMVAHVSDFGLAKFLYNDSSMASSTSYSMSGPRGSIGYIAPEYAMGCKISFEGDIYSYGIILLEMITGMYPTDEMFTDGMNLHKMVLSAIPHKITEILEPSFTKDYLGEDRDHELVELTMCTVMQLAELGLRCTVTLPKDRPKIKDVYTEIISIQSMFSALNN |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0020880 | OsKeNa_11g0020880.01 | Chr11 | 25843447 | 25846903 | - | NAM | ||
| CDS seq | atgagtcattttgcaacccatgaatggccgatgcttttgttaatcttagtccgtttgttgattatatttcctgcattgaattcagataccgatagggatgcccttctcagcctcaaatctcagctctctgatccgtcaggtgccttagcttcctggagaaatgactcttccatgttctgcgattggcatggagtgacatgtagcagacataatgcatctcaagttatatcactagatcttgaatcacttaaccttactggtcaaatttttccttgcatagctcagctcagtttcctttccagaatacacatgcccaacaaccaactcaatggacacatttctccagatattggtcttttaacaagacttacatacctcaaccttagcatgaactccctaaatggtgttatcccacactccatatcatcgtgttctcgccttgaggtcatcagcctacagagcaactccctacaaggtgagatcccgcagagtcttgctgaatgttcatttcttcagaaaattgttctaagcaacaacaatcttcaagggagcatcccttccaagtttggtttgcttgcaaacctttctgtcatattgctctcaagcaacagcctaagtggtagtattcctgaacttttggggagtaccaggtcactcacagaggtgaatctaaacaacaatagcatcagtggtaaaatccctccaagtatattcaacagcactaccctgtcttatattgatctctcgcacaatcacctttctggctctatcccacctttctcaaaaagctccatgccactgcagttacttagccttgctgaaaacaatctgacaggagagatccctgtttcacttggaaacatttcttccctttcattcttgcttctatctcaaaataacctgcaaggaagcattccagagagtttaagtaaaattgtcaatttgcgagtattaaacttaaagtataataacttgtcaggcgttgttcctccagcattgttcaatatctcatctcttactgatcttatccttaacaataaccagcttgttggaacaattcctgccaacttgggtagcactctttcaaacatcacagaactggtaataggaggaaaccagtttgaaggccaaatccctaattcgttggccaatgcatcaaacctccaaactcttgatattcgaagcaatttgttcagtggtcatattccttcattaggactcttgtcagagttgaaaatgctagacttgggtactaatatgcttcaagctggagattggacattcttatcctctctaacaaactgtccccaattaaaatcattatcattggattttaatggctttgagggaaaaatacctatttctattggaaacctttcaaaaagcttagaggaacttcacttaatggcaaaccaattgactggtgatataccttcagaaataggaaagctcactggcctcactgttattacattgggaatgaatggactcacagggcatattcctgatacacttcagaatctccaaaacctatctgttttaagcttatccaagaataaactttctggtgaaatcccacaatcaatagggaaactagagcagcttactgagcttcatttgagagaaaatgaattaaccggtcgcatccctacaagtttagctggttgtaaaaatttggttcagctaaatctttcttctaatagcttccatggaagcattccacaggagctcttttccatttccacactttctataagcttagatttgtcgaataaccaactcacaggagacataccaatggagataggtaaattgatcaacttaaattccctcagtatttcgaacaaccggttatcgggcgagatcccttccaatcttggcaattgccttcttttgcaatcattgcatttggaggccaattttttaaatggacacatccctagttcccttatcaacttaagaggcatcgttgagatggatctttcccaaaataatctgtctggtgaaatcccagaattctttggatcatttagctctttaaagattctgaatctatcattcaataaccttattgggcctgttcctaaaggtggagtctttgacaattcaagcgctgtgtgcatccaaggaaataacaagttgtgtgcaagttctccaatgttacaattaccactttgtgtggaatcaccctcaaaaaggaagaagacaccatacattttagctatccttgttccagttactactattgttatgatcaccatggcatgtcttatcaccatccttttgaagaagagatacaaggctagacaacccatcaaccaatcattgaagcagttcaagagtttctcctaccatgatttgtttaaagcaacatacggtttctcgtcgtcaaatattattggttcaggaagatttggattagtatacagaggttacatcgagtctgatgtatccatagttgctattaaggtattcagacttgaccaatttggagcaccaaataatttcatcgctgaatgtgaggcattcagaaacatccgtcatagaaatcttataagagtgattagcctatgttcaacttttgatccagctggaaatgaatttaaagcactgattcttgagcacatggcaaatggaaacttggaaagctggctccatccaaaacgaaacaaacaaattccaaaagaaccgttgagtttagcatcgagactatcaatagccatggatatagctgttgcattagattatcttcacaaccaatgtagtcctcctttagttcattgcgatcttaaaccaagcaatgttcttttggatgatgaaatggttgctcatgttagtgactttgggcttgcaaagtttctttataacgactcctcaatggcgagtagtacttcatatagcatgtctggaccaagaggatcaattggctatattgcaccagaatatgcaatggggtgcaaaatctcctttgagggtgacatctacagctatggtattattcttctcgagatgatcactgggatgtatcctactgatgagatgtttacggatggcatgaaccttcataaaatggtgttgtcagcaattccacacaaaattactgagattttggaacctagttttaccaaagattatttgggtgaagacagagatcatgaattggtagaactaacaatgtgcactgtcatgcaattggctgaacttggcctcagatgcactgtgactttacccaaggatcgaccaaaaataaaggatgtttacactgaaatcatctccatccaaagcatgttttcagcattgaacaattaa
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| Protein seq | MSHFATHEWPMLLLILVRLLIIFPALNSDTDRDALLSLKSQLSDPSGALASWRNDSSMFCDWHGVTCSRHNASQVISLDLESLNLTGQIFPCIAQLSFLSRIHMPNNQLNGHISPDIGLLTRLTYLNLSMNSLNGVIPHSISSCSRLEVISLQSNSLQGEIPQSLAECSFLQKIVLSNNNLQGSIPSKFGLLANLSVILLSSNSLSGSIPELLGSTRSLTEVNLNNNSISGKIPPSIFNSTTLSYIDLSHNHLSGSIPPFSKSSMPLQLLSLAENNLTGEIPVSLGNISSLSFLLLSQNNLQGSIPESLSKIVNLRVLNLKYNNLSGVVPPALFNISSLTDLILNNNQLVGTIPANLGSTLSNITELVIGGNQFEGQIPNSLANASNLQTLDIRSNLFSGHIPSLGLLSELKMLDLGTNMLQAGDWTFLSSLTNCPQLKSLSLDFNGFEGKIPISIGNLSKSLEELHLMANQLTGDIPSEIGKLTGLTVITLGMNGLTGHIPDTLQNLQNLSVLSLSKNKLSGEIPQSIGKLEQLTELHLRENELTGRIPTSLAGCKNLVQLNLSSNSFHGSIPQELFSISTLSISLDLSNNQLTGDIPMEIGKLINLNSLSISNNRLSGEIPSNLGNCLLLQSLHLEANFLNGHIPSSLINLRGIVEMDLSQNNLSGEIPEFFGSFSSLKILNLSFNNLIGPVPKGGVFDNSSAVCIQGNNKLCASSPMLQLPLCVESPSKRKKTPYILAILVPVTTIVMITMACLITILLKKRYKARQPINQSLKQFKSFSYHDLFKATYGFSSSNIIGSGRFGLVYRGYIESDVSIVAIKVFRLDQFGAPNNFIAECEAFRNIRHRNLIRVISLCSTFDPAGNEFKALILEHMANGNLESWLHPKRNKQIPKEPLSLASRLSIAMDIAVALDYLHNQCSPPLVHCDLKPSNVLLDDEMVAHVSDFGLAKFLYNDSSMASSTSYSMSGPRGSIGYIAPEYAMGCKISFEGDIYSYGIILLEMITGMYPTDEMFTDGMNLHKMVLSAIPHKITEILEPSFTKDYLGEDRDHELVELTMCTVMQLAELGLRCTVTLPKDRPKIKDVYTEIISIQSMFSALNN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.818144 | 0.096416 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0628000 | SBH | 0.072616 | 0.552695 | 0.699903 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41100 | RBH | 0.049595 | 0.375431 | 0.181961 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0628000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020940 | RBH | 0.172235 | 5.584496 | 2.749896 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020770 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020250 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0368500 | RBH | 0.004222 | 0 | 0.850183 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021270 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0386300 | RBH | 0.8344205 | 0.750996 | 0.400417 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021060 | RBH | 0.0 | 0.147010 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020890 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020510 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020580 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021040 | RBH | 0.0 | 62.406155 | 0.000000 |
