Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0017300 | OGI:11061370 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:21956707-21960953 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagaggtggtgctggctggcttacatttggcagcatcgccaaccttcatgaagctcctcactgacccttcaatgtgccttggcgtggacatgaagcgtgagctccatgaactagagaccaccatcatgccgcagtttgagctgatgattgaagcagctgataagcttaaccacagatccaagctggacaaatggctcggggaactcaaggaagccttgtacaacgctgaggatctgctcgacgagcacgagtacaatgtcctcaagtgcaaagcgaagcgtgggagtgattcctctgtggcgcatgtctcctccatcaataacactttgaagaagcctctgcatgctgcatttagcagggtgtccaatctgcacccagagaacagaaagctacttcgccagctgaacgaactgaagggcatcctggcgaaagccggggagttctgtgaactgcttggtttaccaggtggcaatagtgcagaggtctccagcctaccaaaaactgccggtgtcgctccagctacatcacttccaccaccaaaagtttttggtcgggacatggaccgcaaccgtatagtagattttcttattaagaagagtgcctttgaggctagctacatggttttggccattgttggacaagggggcatgggaaaatccaccttggcacagtatgtttataacgatgatagggtgaaagaacattttgatgtaaggatgtgggtctgcatctcacgcaaacttgatgtccatcggcatacacgggagattatcaagtctgcagagaagggtgagtgcccacgtgttgataatcttgacactcttcagtgcaaactaagggaaatcctgcatgaaaaagagaaattcctccttgtgttggatgatgtttggtttgataaatctaacaaccagagtgaatgggacttactgctcaatcctctgctagcttctcagaaagggggaagcaaagttttggtaacttctcggtcaaagacacttccagctgctcttttctgtgaagaggtcattgatttggaaaacatgaaagataatgatttcttggcactcttcaaacactatgctttctctggagctgtcatccgagatctgcaattgcacgggaagctagaagagattgcagagaggatttgtaaaaggcttggaaaatctcctctggctgcaaaagttgtgggttcccagttgaaagggaaaattgatagcactgcatggaaggatgctctagctataaagattgacaacctgagagccaatggaagctctgtcatggagctaccaaaagttacatccatatctgcagaggtgctttctgtattgcagcttatttccaaaaggtttcaagtataaaattgatgagttggtccacctttgggtggcagagggattagttgattcaggcaacctgaataagagtatggaagacactggccgggattacttcaatgagatggtgtctgtatctttctttcaacccatatctgaaatgcatgtcagtaaacagtacagcatgcatgatcttctccatgagtttgcagagtcactttcaaaagaagactgctttagattagaagatgatagtgagaaagtaataccatgcacgattcgtcatttatctgtttgtattgagagtgtgaaactgcataagcaaagtatctgcaagttacatcatttacgcactgttatctgcactgaaccactagtggatgatggaaacgatctcttcaatcaggtattgcagaatctgaagaagttgcgtgcactccatttgtcattttacaacacaagcaagttgcctgaatctattggtcagctgaagcaccttcggtatttgaacattatcaaaacattgatttctgaattgccgagatcattgtgtactctttaccacctacagttacttcagttaaacaacaaatttgagagtttgcctgagaaactctgcaatttaagtaagttgcggcatcttgaagggtacaatgatttaatgtatagtatgcgtgaagaagcagtacctcaaattccgaacataggcaagttaacttctctacaacatattgatgatttttgcgtgcaaaagcagaagggttatgagttatggcaactgagggacatgaacgagcttggcggcagtttgagtatcacaaatctcgagaatgtcactggaaaggatgaagccttggagtcaaagctacatgaaaaaagtcatgttaaaacattgaagcttgtctggagttgcaataacatggatgcagaagatagtttttatttggacattctagaaggtttgatgccaccgcccaaaattgagggccttacaatcaatggttacagacctgccacatatccaagctggctccttaagggttcctattttgagaatttggagtctcttgagcttgttaattgcagttcattggaaagcctaccacccaatacgaaactcctaaggcactgtgataaacttacacttagaaatgttccaaacctgaagacgttaacatgtcttccaggaggccttacatgcctgtcgatcgaagaatgcccgctgcttatgtttatttccaacgatgaggttgaacagcatgttcagagggagaacaacatgatgagggcagaccacttggcatcacaccttgctttgatctgggatgtggatttaggatcagatataatgaatgcactatctgatgaacattcatcattgaagcacttgtcaacatggatggatgctgacataatggaaaatcttcaaaccattgaaagcgctctagaaagaggagatgaaaaagaaaacatcatccaggcatgggtatgttgccatgagcacaggattagactcctttacaaaaggaacgtcggtctgccattagttccaccatcaggactttgccgacttcatctctcttcatgcagtattacggatggagctttatctaactgccttggtagcctcatttcactgaaaagattgtcgctaataaacatcatgactttgaccacacttccgtcagatggggtcgttcaacattcgagaaagcttgaattcctattcattaaatattgctggtgtctcagatcattaggaggcttgcgagcagctacatctcttttcgaagccaggtttatctcctgcccttctttagagctggcacatggagcagaatctatgccatcttcccttcagaaacttagtatatatagctgtgtgatcacagctgacctcttctgtactgacttgccaaacctcgaacaacttggactgtgtagctgcagaagctcttcatccatgtctgttggtcgtctaacctccctcaaatcattctcactatatcattcaccagatttatgtgtgctggaagacttgtcttctctgcaacttcatcacgtgcatttgatagatgttccaaagcttactggagagtgcatctcacagtttcgtgtccaatattcactctatgttagcagttttgtgatgctcaaccacatgctctccgctgaaggcttcaaagttccaccatttctctctcttgaaaattgcaaggagccatccattgcatttgaagaatctgcagcacattttgcaatggtcaggtgcctgaggtttcgtgactgaaatgaggtccctagaaggaaatatgaagtgcctctcaagtctaaataaactcgatatacatttttgcccaaacatttcatcttccagacctgccgtcctccctccagcatttatccatctggggctgtgaactcttgaaggagaactgcagagcacctgacggagaaagctggccaaagattgcgcatatccgctggaaggattaccgatgaattgtgcttcagaatcacgactagaaagaaacagaaaggtgaatgttccataattgcattctccgaagtattttctacaagatttattccattcacttacgagctttcaaacacggcatttacttcaatatttgcttcctttttttttgaacaggcacaccaagaattgtccccctcaagtagcctcgtctccgcacttcgctgcctgttacaaggtgcctcaagctgatatggcagttcagctctctcctgtggcctgtgctgtctgctctgcttggttccctgctttcaccaattgccgcataagttgcacacccgccttcgaccggcccatcacctcctctcatccggtttccctaaatgaaggcttaaatggagtcttgtttggttcttcggtctag
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| CDS seq | atggcagaggtggtgctggctggcttacatttggcagcatcgccaaccttcatgaagctcctcactgacccttcaatgtgccttggcgtggacatgaagcgtgagctccatgaactagagaccaccatcatgccgcagtttgagctgatgattgaagcagctgataagcttaaccacagatccaagctggacaaatggctcggggaactcaaggaagccttgtacaacgctgaggatctgctcgacgagcacgagtacaatgtcctcaagtgcaaagcgaagcgtgggagtgattcctctgtggcgcatgtctcctccatcaataacactttgaagaagcctctgcatgctgcatttagcagggtgtccaatctgcacccagagaacagaaagctacttcgccagctgaacgaactgaagggcatcctggcgaaagccggggagttctgtgaactgcttggtttaccaggtggcaatagtgcagaggtctccagcctaccaaaaactgccggtgtcgctccagctacatcacttccaccaccaaaagtttttggtcgggacatggaccgcaaccgtatagtagattttcttattaagaagagtgcctttgaggctagctacatggttttggccattgttggacaagggggcatgggaaaatccaccttggcacagtatgtttataacgatgatagggtgaaagaacattttgatgtaaggatgtgggtctgcatctcacgcaaacttgatgtccatcggcatacacgggagattatcaagtctgcagagaagggtgagtgcccacgtgttgataatcttgacactcttcagtgcaaactaagggaaatcctgcatgaaaaagagaaattcctccttgtgttggatgatgtttggtttgataaatctaacaaccagagtgaatgggacttactgctcaatcctctgctagcttctcagaaagggggaagcaaagttttggtaacttctcggtcaaagacacttccagctgctcttttctgtgaagaggtcattgatttggaaaacatgaaagataatgatttcttggcactcttcaaacactatgctttctctggagctgtcatccgagatctgcaattgcacgggaagctagaagagattgcagagaggatttgtaaaaggcttggaaaatctcctctggctgcaaaagttgtgggttcccagttgaaagggaaaattgatagcactgcatggaaggatgctctagctataaagattgacaacctgagagccaatggaagctctgtcatggagctaccaaaagttacatccatatctgcagagggattagttgattcaggcaacctgaataagagtatggaagacactggccgggattacttcaatgagatggtgtctgtatctttctttcaacccatatctgaaatgcatgtcagtaaacagtacagcatgcatgatcttctccatgagtttgcagagtcactttcaaaagaagactgctttagattagaagatgatagtgagaaagtaataccatgcacgattcgtcatttatctgtttgtattgagagtgtgaaactgcataagcaaagtatctgcaagttacatcatttacgcactgttatctgcactgaaccactagtggatgatggaaacgatctcttcaatcagttacttcagttaaacaacaaatttgagagtttgcctgagaaactctgcaatttaagtaagttgcggcatcttgaagggtacaatgatttaatgtatagtatgcgtgaagaagcagtacctcaaattccgaacataggcaagttaacttctctacaacatattgatgatttttgcgtgcaaaagcagaagggttatgagttatggcaactgagggacatgaacgagcttggcggcagtttgagtatcacaaatctcgagaatgtcactggaaaggatgaagccttggagtcaaagctacatgaaaaaagtcatgttaaaacattgaagcttgtctggagttgcaataacatggatgcagaagatagtttttatttggacattctagaaggtttgatgccaccgcccaaaattgagggccttacaatcaatggttacagacctgccacatatccaagctggctccttaagggttcctattttgagaatttggagtctcttgagcttgttaattgcagttcattggaaagcctaccacccaatacgaaactcctaaggcactgtgataaacttacacttagaaatgttccaaacctgaagacgttaacatgtcttccaggaggccttacatgcctgtcgatcgaagaatgcccgctgcttatgtttatttccaacgatgaggttgaacagcatgttcagagggagaacaacatgatgagggcagaccacttggcatcacaccttgctttgatctgggatgtggatttaggatcagatataatgaatgcactatctgatgaacattcatcattgaagcacttgtcaacatggatggatgctgacataatggaaaatcttcaaaccattgaaagcgctctagaaagaggagatgaaaaagaaaacatcatccaggcatgggtatgttgccatgagcacaggattagactcctttacaaaaggaacgtcgatgttccaaagcttactggagagtgcatctcacagtttcgtgtccaatattcactctatgttagcagttttgtgatgctcaaccacatgctctccgctgaaggcttcaaagttccaccatttctctctcttgaaaattgcaaggagccatccattgcatttgaagaatctgcagcacattttgcaatggtcaggcacaccaagaattgtccccctcaagtagcctcgtctccgcacttcgctgcctgttacaaggtgcctcaagctgatatggcagttcagctctctcctgtggcctgtgctgtctgctctgcttggttccctgctttcaccaattgccgcataagttgcacacccgccttcgaccggcccatcacctcctctcatccggtttccctaaatgaaggcttaaatggagtcttgtttggttcttcggtctag
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| Protein seq | MAEVVLAGLHLAASPTFMKLLTDPSMCLGVDMKRELHELETTIMPQFELMIEAADKLNHRSKLDKWLGELKEALYNAEDLLDEHEYNVLKCKAKRGSDSSVAHVSSINNTLKKPLHAAFSRVSNLHPENRKLLRQLNELKGILAKAGEFCELLGLPGGNSAEVSSLPKTAGVAPATSLPPPKVFGRDMDRNRIVDFLIKKSAFEASYMVLAIVGQGGMGKSTLAQYVYNDDRVKEHFDVRMWVCISRKLDVHRHTREIIKSAEKGECPRVDNLDTLQCKLREILHEKEKFLLVLDDVWFDKSNNQSEWDLLLNPLLASQKGGSKVLVTSRSKTLPAALFCEEVIDLENMKDNDFLALFKHYAFSGAVIRDLQLHGKLEEIAERICKRLGKSPLAAKVVGSQLKGKIDSTAWKDALAIKIDNLRANGSSVMELPKVTSISAEGLVDSGNLNKSMEDTGRDYFNEMVSVSFFQPISEMHVSKQYSMHDLLHEFAESLSKEDCFRLEDDSEKVIPCTIRHLSVCIESVKLHKQSICKLHHLRTVICTEPLVDDGNDLFNQLLQLNNKFESLPEKLCNLSKLRHLEGYNDLMYSMREEAVPQIPNIGKLTSLQHIDDFCVQKQKGYELWQLRDMNELGGSLSITNLENVTGKDEALESKLHEKSHVKTLKLVWSCNNMDAEDSFYLDILEGLMPPPKIEGLTINGYRPATYPSWLLKGSYFENLESLELVNCSSLESLPPNTKLLRHCDKLTLRNVPNLKTLTCLPGGLTCLSIEECPLLMFISNDEVEQHVQRENNMMRADHLASHLALIWDVDLGSDIMNALSDEHSSLKHLSTWMDADIMENLQTIESALERGDEKENIIQAWVCCHEHRIRLLYKRNVDVPKLTGECISQFRVQYSLYVSSFVMLNHMLSAEGFKVPPFLSLENCKEPSIAFEESAAHFAMVRHTKNCPPQVASSPHFAACYKVPQADMAVQLSPVACAVCSAWFPAFTNCRISCTPAFDRPITSSHPVSLNEGLNGVLFGSSV |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0017300 | OsKeNa_11g0017300.01 | Chr11 | 21956707 | 21960953 | + | NAM | ||
| CDS seq | atggcagaggtggtgctggctggcttacatttggcagcatcgccaaccttcatgaagctcctcactgacccttcaatgtgccttggcgtggacatgaagcgtgagctccatgaactagagaccaccatcatgccgcagtttgagctgatgattgaagcagctgataagcttaaccacagatccaagctggacaaatggctcggggaactcaaggaagccttgtacaacgctgaggatctgctcgacgagcacgagtacaatgtcctcaagtgcaaagcgaagcgtgggagtgattcctctgtggcgcatgtctcctccatcaataacactttgaagaagcctctgcatgctgcatttagcagggtgtccaatctgcacccagagaacagaaagctacttcgccagctgaacgaactgaagggcatcctggcgaaagccggggagttctgtgaactgcttggtttaccaggtggcaatagtgcagaggtctccagcctaccaaaaactgccggtgtcgctccagctacatcacttccaccaccaaaagtttttggtcgggacatggaccgcaaccgtatagtagattttcttattaagaagagtgcctttgaggctagctacatggttttggccattgttggacaagggggcatgggaaaatccaccttggcacagtatgtttataacgatgatagggtgaaagaacattttgatgtaaggatgtgggtctgcatctcacgcaaacttgatgtccatcggcatacacgggagattatcaagtctgcagagaagggtgagtgcccacgtgttgataatcttgacactcttcagtgcaaactaagggaaatcctgcatgaaaaagagaaattcctccttgtgttggatgatgtttggtttgataaatctaacaaccagagtgaatgggacttactgctcaatcctctgctagcttctcagaaagggggaagcaaagttttggtaacttctcggtcaaagacacttccagctgctcttttctgtgaagaggtcattgatttggaaaacatgaaagataatgatttcttggcactcttcaaacactatgctttctctggagctgtcatccgagatctgcaattgcacgggaagctagaagagattgcagagaggatttgtaaaaggcttggaaaatctcctctggctgcaaaagttgtgggttcccagttgaaagggaaaattgatagcactgcatggaaggatgctctagctataaagattgacaacctgagagccaatggaagctctgtcatggagctaccaaaagttacatccatatctgcagagggattagttgattcaggcaacctgaataagagtatggaagacactggccgggattacttcaatgagatggtgtctgtatctttctttcaacccatatctgaaatgcatgtcagtaaacagtacagcatgcatgatcttctccatgagtttgcagagtcactttcaaaagaagactgctttagattagaagatgatagtgagaaagtaataccatgcacgattcgtcatttatctgtttgtattgagagtgtgaaactgcataagcaaagtatctgcaagttacatcatttacgcactgttatctgcactgaaccactagtggatgatggaaacgatctcttcaatcagttacttcagttaaacaacaaatttgagagtttgcctgagaaactctgcaatttaagtaagttgcggcatcttgaagggtacaatgatttaatgtatagtatgcgtgaagaagcagtacctcaaattccgaacataggcaagttaacttctctacaacatattgatgatttttgcgtgcaaaagcagaagggttatgagttatggcaactgagggacatgaacgagcttggcggcagtttgagtatcacaaatctcgagaatgtcactggaaaggatgaagccttggagtcaaagctacatgaaaaaagtcatgttaaaacattgaagcttgtctggagttgcaataacatggatgcagaagatagtttttatttggacattctagaaggtttgatgccaccgcccaaaattgagggccttacaatcaatggttacagacctgccacatatccaagctggctccttaagggttcctattttgagaatttggagtctcttgagcttgttaattgcagttcattggaaagcctaccacccaatacgaaactcctaaggcactgtgataaacttacacttagaaatgttccaaacctgaagacgttaacatgtcttccaggaggccttacatgcctgtcgatcgaagaatgcccgctgcttatgtttatttccaacgatgaggttgaacagcatgttcagagggagaacaacatgatgagggcagaccacttggcatcacaccttgctttgatctgggatgtggatttaggatcagatataatgaatgcactatctgatgaacattcatcattgaagcacttgtcaacatggatggatgctgacataatggaaaatcttcaaaccattgaaagcgctctagaaagaggagatgaaaaagaaaacatcatccaggcatgggtatgttgccatgagcacaggattagactcctttacaaaaggaacgtcgatgttccaaagcttactggagagtgcatctcacagtttcgtgtccaatattcactctatgttagcagttttgtgatgctcaaccacatgctctccgctgaaggcttcaaagttccaccatttctctctcttgaaaattgcaaggagccatccattgcatttgaagaatctgcagcacattttgcaatggtcaggcacaccaagaattgtccccctcaagtagcctcgtctccgcacttcgctgcctgttacaaggtgcctcaagctgatatggcagttcagctctctcctgtggcctgtgctgtctgctctgcttggttccctgctttcaccaattgccgcataagttgcacacccgccttcgaccggcccatcacctcctctcatccggtttccctaaatgaaggcttaaatggagtcttgtttggttcttcggtctag
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| Protein seq | MAEVVLAGLHLAASPTFMKLLTDPSMCLGVDMKRELHELETTIMPQFELMIEAADKLNHRSKLDKWLGELKEALYNAEDLLDEHEYNVLKCKAKRGSDSSVAHVSSINNTLKKPLHAAFSRVSNLHPENRKLLRQLNELKGILAKAGEFCELLGLPGGNSAEVSSLPKTAGVAPATSLPPPKVFGRDMDRNRIVDFLIKKSAFEASYMVLAIVGQGGMGKSTLAQYVYNDDRVKEHFDVRMWVCISRKLDVHRHTREIIKSAEKGECPRVDNLDTLQCKLREILHEKEKFLLVLDDVWFDKSNNQSEWDLLLNPLLASQKGGSKVLVTSRSKTLPAALFCEEVIDLENMKDNDFLALFKHYAFSGAVIRDLQLHGKLEEIAERICKRLGKSPLAAKVVGSQLKGKIDSTAWKDALAIKIDNLRANGSSVMELPKVTSISAEGLVDSGNLNKSMEDTGRDYFNEMVSVSFFQPISEMHVSKQYSMHDLLHEFAESLSKEDCFRLEDDSEKVIPCTIRHLSVCIESVKLHKQSICKLHHLRTVICTEPLVDDGNDLFNQLLQLNNKFESLPEKLCNLSKLRHLEGYNDLMYSMREEAVPQIPNIGKLTSLQHIDDFCVQKQKGYELWQLRDMNELGGSLSITNLENVTGKDEALESKLHEKSHVKTLKLVWSCNNMDAEDSFYLDILEGLMPPPKIEGLTINGYRPATYPSWLLKGSYFENLESLELVNCSSLESLPPNTKLLRHCDKLTLRNVPNLKTLTCLPGGLTCLSIEECPLLMFISNDEVEQHVQRENNMMRADHLASHLALIWDVDLGSDIMNALSDEHSSLKHLSTWMDADIMENLQTIESALERGDEKENIIQAWVCCHEHRIRLLYKRNVDVPKLTGECISQFRVQYSLYVSSFVMLNHMLSAEGFKVPPFLSLENCKEPSIAFEESAAHFAMVRHTKNCPPQVASSPHFAACYKVPQADMAVQLSPVACAVCSAWFPAFTNCRISCTPAFDRPITSSHPVSLNEGLNGVLFGSSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.348567 | 1.073774 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0555300 | RBH | 0.040707 | 0.0 | 0.480693 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35210 | RBH | 0.033303 | 0.0 | 0.124973 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0555300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017240 | RBH | 0.0 | 1.280065 | 0.863404 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017160 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017180 | RBH | 0.0 | 0.0 | 1.760643 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017110 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0323700 | RBH | 0.129528 | 18.5203775 | 0.120765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017600 | RBH | 0.000000 | 0.0 | 0.134167 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0332700 | RBH | 0.069828 | 15.6081315 | 1.112644 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017450 | RBH | 0.0 | 0.072594 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017470 | RBH | 0.047205 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016990 | RBH | 0.0 | 6.299151 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016860 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017020 | RBH | 0.0 | 3.323578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016970 | RBH | 0.0 | 0.0 | 0.067297 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017310 | RBH | 0.000000 | 4.453020 | 0.449938 |
