Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_11g0016450 OGI:11058510 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr11:21112023-21114283
Gene Symbol -
DNA seq

atgggtgaggaatcagctgttagagcggaggagattggcaaggtgacagtagagatagagaagttgattgctacaaacaacgccaatgccctgcttgagaagacgacgacggcgcggcgatccaagacgacgaaggggccctccatctaccgggttccggattacatcaagaagacgaccaacccggatgcctaccggccgcatctggtgtcattggggccctttcaccacggcgacaaggcattgctcggcatggaggcgcacaagcaccgagcggtggcgcacatggtcaagcggagcgggaagccactgcgggagttcatgactgccgtcaaagaggtagcacaacaactgcgaggcgcttacgagaacctagataagaagtggcacgaagagcggttcgtcgagttgatggtcatcgacggctgcttcttgctggagattatgaggacatttagggctttccgtcgtggaggggaagtagtagattatgacgattacggtcctgacgaaccgatcttcagcaaacacggctacctatacttgcgctgtgatattatgtccgatatgctcacactggagaatcaggtgcccctgctcctcctccagacgctctggcatgttatggatcctgaaaaactaattcaggtacactcaatataatcccagtcgaagaaccagcactacatatttctctccatatatattttctttggggtattcaattaggaatttaggattgagatcgagtactatccctgaactagagccagaaaacaatcatttctaaaactacttcctccgtttcatattataggttgttttgacttttcttttcctatttaaactttgttaggtttgacaaaaattatacacaaaagagtaaagtgcacggatggcccctaaacttgtgcgagtatatatatgtcgtctagttacttgaactctcaaaatgcattttttttcctaaatttgtcgtgggtatcatatagatccaaacaggctccaaaacctgctccgtgtactgatgtgatatgtcatgaatggtggcacctactcgtattagtggaacctagtatatgtcagtcatatataaaaaaaattaagaacatatttttttcctcttgtttttcttatttttttaaaaaattatctcctctctttttaaattttattgtttctacgtgcctgtatcacactaatgcgtaagcaccaccgttgcatgacatgtctgctcatgaagccggttggagcctgttttgacctatatgacatccatgacatgtcagggacctagatgacacacctggataaaattagcaatatctaaaacactaaattagttttattaaatctaacattgaatatatttgataataatttgttttgtttgaaaatttttaaacttagtttaactaggaaaaaagccaaaatgatttataatatggaacggagggagtagattatatcacactttgctagccgtgggatagttcaattaatacacaaattaaagagctttgaaattgacaagtggattaaatacaacaaaaagaaagacaagctaatcccctttccattaaacaaagaaacggcaatgacttaattaattacaactggcgatactaagttgacatattttatcacatgttacttaaacaaacgtgttttgcacaggcactaacccctgtgcggagcagtacatgttgaatctagctactagcgagctagttagtagatagattcatgtgggtagcagtattttcgatgtccaaatctatattacctagctgcgtactctgacgtacgtaatgacattttcatgatttcatgaatataaatcaagatagatatacaaattttgaaattttactaatgctctcgtcatgtcacaggaagatggactgataagcaagcgcgtgctagaatttttcggcccgttagtcgcggaagtcaaggaccccctccaggggaacgaggggatccaccctctggatgttgttcagagaagcgtgggtggtaatcgtcggcagtgccgggagtcggccaaggagtactctgtcatgccctgtgcctcggatctccacgaggcaggaatctacttcaagttgagtcccgctcctaacggattcgtagaggcggtcaggtttggacgcggcgtactaagcatcccgcggatgaccctgtacgacaacgccgagcgcgtgttcctcaacctgatggcattcgagcggctccacccgggcgccggaacgacgtga

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CDS seq

atgggtgaggaatcagctgttagagcggaggagattggcaaggtgacagtagagatagagaagttgattgctacaaacaacgccaatgccctgcttgagaagacgacgacggcgcggcgatccaagacgacgaaggggccctccatctaccgggttccggattacatcaagaagacgaccaacccggatgcctaccggccgcatctggtgtcattggggccctttcaccacggcgacaaggcattgctcggcatggaggcgcacaagcaccgagcggtggcgcacatggtcaagcggagcgggaagccactgcgggagttcatgactgccgtcaaagaggtagcacaacaactgcgaggcgcttacgagaacctagataagaagtggcacgaagagcggttcgtcgagttgatggtcatcgacggctgcttcttgctggagattatgaggacatttagggctttccgtcgtggaggggaagtagtagattatgacgattacggtcctgacgaaccgatcttcagcaaacacggctacctatacttgcgctgtgatattatgtccgatatgctcacactggagaatcaggtgcccctgctcctcctccagacgctctggcatgttatggatcctgaaaaactaattcaggaagatggactgataagcaagcgcgtgctagaatttttcggcccgttagtcgcggaagtcaaggaccccctccaggggaacgaggggatccaccctctggatgttgttcagagaagcgtgggtggtaatcgtcggcagtgccgggagtcggccaaggagtactctgtcatgccctgtgcctcggatctccacgaggcaggaatctacttcaagttgagtcccgctcctaacggattcgtagaggcggtcaggtttggacgcggcgtactaagcatcccgcggatgaccctgtacgacaacgccgagcgcgtgttcctcaacctgatggcattcgagcggctccacccgggcgccggaacgacgtga

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Protein seq

MGEESAVRAEEIGKVTVEIEKLIATNNANALLEKTTTARRSKTTKGPSIYRVPDYIKKTTNPDAYRPHLVSLGPFHHGDKALLGMEAHKHRAVAHMVKRSGKPLREFMTAVKEVAQQLRGAYENLDKKWHEERFVELMVIDGCFLLEIMRTFRAFRRGGEVVDYDDYGPDEPIFSKHGYLYLRCDIMSDMLTLENQVPLLLLQTLWHVMDPEKLIQEDGLISKRVLEFFGPLVAEVKDPLQGNEGIHPLDVVQRSVGGNRRQCRESAKEYSVMPCASDLHEAGIYFKLSPAPNGFVEAVRFGRGVLSIPRMTLYDNAERVFLNLMAFERLHPGAGTT

Function UPF0481 protein At3g47200 [UniProtKB/Swiss-Prot:Q9SD53]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_11g0016450 OsKeNa_11g0016450.01 Chr11 21112023 21114283 + NAM
CDS seq

atgggtgaggaatcagctgttagagcggaggagattggcaaggtgacagtagagatagagaagttgattgctacaaacaacgccaatgccctgcttgagaagacgacgacggcgcggcgatccaagacgacgaaggggccctccatctaccgggttccggattacatcaagaagacgaccaacccggatgcctaccggccgcatctggtgtcattggggccctttcaccacggcgacaaggcattgctcggcatggaggcgcacaagcaccgagcggtggcgcacatggtcaagcggagcgggaagccactgcgggagttcatgactgccgtcaaagaggtagcacaacaactgcgaggcgcttacgagaacctagataagaagtggcacgaagagcggttcgtcgagttgatggtcatcgacggctgcttcttgctggagattatgaggacatttagggctttccgtcgtggaggggaagtagtagattatgacgattacggtcctgacgaaccgatcttcagcaaacacggctacctatacttgcgctgtgatattatgtccgatatgctcacactggagaatcaggtgcccctgctcctcctccagacgctctggcatgttatggatcctgaaaaactaattcaggaagatggactgataagcaagcgcgtgctagaatttttcggcccgttagtcgcggaagtcaaggaccccctccaggggaacgaggggatccaccctctggatgttgttcagagaagcgtgggtggtaatcgtcggcagtgccgggagtcggccaaggagtactctgtcatgccctgtgcctcggatctccacgaggcaggaatctacttcaagttgagtcccgctcctaacggattcgtagaggcggtcaggtttggacgcggcgtactaagcatcccgcggatgaccctgtacgacaacgccgagcgcgtgttcctcaacctgatggcattcgagcggctccacccgggcgccggaacgacgtga

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Protein seq

MGEESAVRAEEIGKVTVEIEKLIATNNANALLEKTTTARRSKTTKGPSIYRVPDYIKKTTNPDAYRPHLVSLGPFHHGDKALLGMEAHKHRAVAHMVKRSGKPLREFMTAVKEVAQQLRGAYENLDKKWHEERFVELMVIDGCFLLEIMRTFRAFRRGGEVVDYDDYGPDEPIFSKHGYLYLRCDIMSDMLTLENQVPLLLLQTLWHVMDPEKLIQEDGLISKRVLEFFGPLVAEVKDPLQGNEGIHPLDVVQRSVGGNRRQCRESAKEYSVMPCASDLHEAGIYFKLSPAPNGFVEAVRFGRGVLSIPRMTLYDNAERVFLNLMAFERLHPGAGTT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0540900 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g33430 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0540900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0016440 SBH 1.924836 0.0 4.441315
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0016420 SBH 0.383865 0.0 0.479040
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0016360 SBH 1.705922 0.0 7.307921
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0015970 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0016390 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0311400 RBH 0 0.010016 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0016700 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0320100 RBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0016680 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0016570 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0016300 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0016080 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0016290 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G016120 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0016530 SBH 0.000000 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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