Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0014741 | OGI:11061470 | 4/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:19065931-19071039 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcgaggaggagagattcttcagtatagagagaatagttcatattacaatttaatatcctgtctctccctcctagcctctatttatagcttgctaattaacccattgctcacccttatactttgggttgggttttcttacacgcttttcactactacaacccactaacagctcatcgacttgaggtgagctgctaggcgtgacattcctccttccttgaaaagcagcttgaccccaagctgcagccataggaaattgatgtttaagagcttcaaagtcttcccaagtggctgtagcagaagaggatccagaccactgtaccaaaacctgcacaatcatcttgtcgcccttacggcgcagacgacgctaaagcaccaaaacaggcacagcaagatgacaagtatccagatccaaacgaggcaaatgagactgaacttgttcagaaggaggcactgctttcttgagttgagagacatgtaccactggatgaataagactagtggccggtagctccaaccgataagcaacagagccaatgcgctgcagaacttgaaaagggccataatatttgaaggctagtttctgattggaacgagtcatcacagactgctgcacatatggctgcaatttcataaacacccaatcacccacggcaaaaatcctctcagttcgtttggaatcagcttgatgtttcatacgttgctgagcacgcatcaaatgatggtgaatcaaaagttgcatattgttgcgatcttgaagccaagaatccaaagaactgggcacacccactgaatcaacagagatgccaaaataacgaggttttttgccgaacattgcttcaaagggtgtcatcaccagagcagaatggaatgatgtgttgtaccaaaattgggccaaagccaaccactgactccaccgagcaaggcacgcatgaacaaagcagcaaagaaatatctcaagacattgattaacgcgctcccatccgactgtggatgataagatgaactcatgcgcaattgggtaccagcacgaagaaataattccttccacaaattactggtgaaaacacgatctcgatcagagacaatagcctgaggaaagccatgaatgcaatgaattctgttcataaacaactgagccactgtcatagttgtgaaaggatgccgaagtggaagaaaatgagcaaatttagtgaacttgtccaccaccacaaagatacagttataagaagctgaacacggcagcccttccacaaaatccatagatattacttgccaagcatgctcagcaatttgcagcggctgcagaagtccagggtaagcaacatgttcaggtttagctctttgacaggtatcacaactctgaacaaaatcatgcacacatttgcgtagtcctggccaagcaaaaagctgcatcactctttgatatgtcacttgaataccagagtgtcctcccacagccgaagcatgtaagttggccaaaatctgctgctgcaactggacattattatcaacccagacacggcgcttaaaatacaacagaccatcctgtaactcaaaattagaattaggagaagcaccaggagcaaaagaggcaataattttctgtgtcagaatcaaccgaatatccctggatcacatcctgcaaccaagccggaaaagaaattgacagagcacacaaaactggcaatccttcaggtactctgcgagataacgcatcagcagccccattgtccaaatcacgcttgtaaacaatacgatagcgtagacccaagagtttggtcagtgccttttgttgccatggagtagacaaacgctgatcatccagaaaagacgaacttctatgatcagtgcgtatcacaaattcgtcatgttgcaaatatgaacgccaatgctccactgctaatataatggccaaactttccttctcatatgtcgacaaggattgtgtgcgaggacccaaagctttacagagaaaagctaatgggtgcatcagtctcaacaacaaactgcttctgaaaatcaagtaacgccaaaacatgagcagagattaaggcagacttcagagtatcaaaagcttcctgatgatgaacagtccacacaaaagtctatcccttcttgagtaaatttgtcaatggtctactgataatgccaaaatgacgcaataatttgcggtaatatccagctaaacccagaaaacttcgaacctctttcacatttaccggaaccggccaagtcttaactacctgaatcttctgaggatcagtagcaacaccatgctcacttatgatatgtcccagataagcaacacttggttgagcaaacgagcatttagataacttgacttgcaactgattggtgtgtaagatctcaaatacttgtcgcaaatgcaactcatgttcagccaatgttttactgtaaatgaggatatcatcgacaaaaactagcacactgtgacgcaaatgttcggccaaaactgaattcatgacaccttgaaaagttgcaggtgcacttgtgagaccgaaaggaattaccttaaactcataatgtccattatgagttttaaaagcagttttcggctcttctccagctgccattcgaatttgatgataaccggaacataagtccaatttagaaaaccaacaagcaccggccaattcatccaacaattcatcaatgattggcaaggggtacttgttcttgattgttatggcattcaagtgacgataatccacacaaaaacgccatgaaccatcctttttcttcacaagcaaaactggggaggaaaagggactagcacttggctgaataattcctttttgcaacatgtctttaacttgcctttcaatctcatctttttgagctggtgtataacggtatggtctcacattgacaggaacaaccaaaggtaacaatggaatggtgtgatcataagggcgctctggtggtaatgcagtaggttcttcaaggagaacagaaaattcagatatcaatgtctgaatttgcggtggcactggcagattagtatgctcctcttgaactgcacataactgaaccaaaccttccaccgaattcctgagtttcaaagcaactagctgttcctgagagatcacatcataactagtcattttggacaccttggatggttacctgatgtgttcccaatgtcaaacgaatagtcttagcttgccaatcaatatccatgggactatgttgagttaaccaatccatacctagtatggcatcataaccccccatggtgatcaccttgaaagtagtacaaaaaaccaaaaccttgtacataccagactgtgtttggttattctgtcaaacaacgcaacatctcccaattagccactttaactgacaaaggccgtcgcaatggctgaaccccttccaactgattagcaatagcaacactgagaaaactagtggaactccccgagtcaaccataattaacacatctctgccttgaattttaccatgcagccgcatggtagaacaagaaactgtaccctgaatagcatgaattgacagagccaaaagagtagcctgatcattgtcgtcagaactgcaactggaatggtcatcagttggaaacaaggcaaacaactcctgaacatcatgtagttgtactgttcctgaacatttgtgtgacagtgaccatttctcagcacacaaatagcaaagtccctaagctctcctgtgagccttcagtgcactgatcttatctgaagtttgaacagatcgttgtccatcaacaatttttttctcatcagccttgtacaccccttgataaggaacatcaatgatcttgttaggaggtagaggaagtggataagcccctttgtatttagcaccatgatcaccaaatttgcgggactcagttgtctttgctgcatccaccaactcctcctgtaacaaagccaaaaccagagcagactccaaatccacaggtctatgcatcaaaacagagtggtgaatgtctgcacgccatccttctgtgaaccgatgaaccagattcagagtgttatacgtaggatcaaacaccaacgattgattcatcagatcatcaaaccgctcataaaattcactgaccgagccattttgcttaatgtgatcaatctgacgaatcagatgttgatgttgattacgatcaaacttctgattcaccgcttcatagaatactaccaatctgaatgaatgggatgcgcacgcgaggaacgcaaccaggatgcaaccctcccaatgaagtaaatggtagcaacccacacccaaagccccggatgggtgccataaaccccaaaataatgctcacaacgcatccgccaattctatggatcagatccatcaaattggggaaaatccaacttaggcaaccggaaattaaaaccctactcattctgatttccccattcttcacgacccgaatgtgcagaaaaatccaacgaacttcgaaaattaggagtttggggcatacccttggtcgagggtggcacgagagtggtgaccactcctggtgccctcccccaattcagatgagcaacgcggtggcaatccaggccgaggtcgccgcccgatgatgagccggcgaagcatggcggagtcggtggagtcggcagcaacggtggtcgcttgtcgccctcctccatgaatctgcacaccgacgagttgttcgatcctccacctcctctgagttgttgcttctcgaatttctgcacttgcgtcttcaaatccgccatgtcgcgctgcaaatcctggactgcagaatcaacttgtggacgccatcccgaaatttaatgatccagtttcagcatcatctcctgcgtctcgccctgcttggtcaccagcgcgccgatggccacccggatctcggacaacgtcttcccgaaaccgtccaattgcttctccatcgcgtcggcctgaagttgcaatcgagtttggaattttggcttctccaggatgaactgctctgatacgaaatgttaccaacttgcagcagaagaacgagatcaagatagaatcagagaggaattagacagagaaagacaagttggcaaggaggagagattcttcagtatagagagaatagtttagattacaattcaat
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| CDS seq | atgactagttatgatgtgatctctcaggaacagctagttgctttgaaactcaggaattcggtggaaggtttggttcagttatgtgcagttcaagaggagcatactaatctgccagtgccaccgcaaattcagacattgatatctgaattttctgttctccttgaagaacctactgcattaccaccagagcgcccttatgatcacaccattccattgttacctttggttgttcctgtcaatgtgagaccataccgttatacaccagctcaaaaagatgagattgaaaggcaagttaaagacatgttgcaaaaaggaattattcagccaagtgctagtcccttttcctccccagttttgcttgtgaagaaaaaggatggttcatggcgtttttgtgtggattatcgtcacttgaatgccataacaatcaagaacaagtaccccttgccaatcattgatgaattgttggatgaattggccggtgcttgttggttttctaaattggacttatgttccggttatcatcaaattcgaatggcagctggagaagagccgaaaactgcttttaaaactcataatggacattatgagtttaaggtaattcctttcggtctcacaagtgcacctgcaacttttcaaggtgtcatgaattcagttttggccgaacatttgcgtcacagtgtgctagtttttgtcgatgatatcctcatttacagtaaaacattggctgaacatgagttgcatttgcgacaagtatttgagatcttacacaccaatcagttgcaagtcaagttatctaaatgctcgtttgctcaaccaagtgttgcttatctgggacatatcataagtgagcatggtgttgctactgatcctcagaagattcaggtagttaagacttggccggttccggtaaatgtgaaagaggttcgaagttttctgggtttagctggatattaccgcaaattattgcgtcattttggcattatcagtagaccattgacaaatttactcaagaag
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| Protein seq | MTSYDVISQEQLVALKLRNSVEGLVQLCAVQEEHTNLPVPPQIQTLISEFSVLLEEPTALPPERPYDHTIPLLPLVVPVNVRPYRYTPAQKDEIERQVKDMLQKGIIQPSASPFSSPVLLVKKKDGSWRFCVDYRHLNAITIKNKYPLPIIDELLDELAGACWFSKLDLCSGYHQIRMAAGEEPKTAFKTHNGHYEFKVIPFGLTSAPATFQGVMNSVLAEHLRHSVLVFVDDILIYSKTLAEHELHLRQVFEILHTNQLQVKLSKCSFAQPSVAYLGHIISEHGVATDPQKIQVVKTWPVPVNVKEVRSFLGLAGYYRKLLRHFGIISRPLTNLLKK |
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| Function | Retrovirus-related Pol polyprotein from transposon 17.6 [UniProtKB/Swiss-Prot:P04323] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0014741 | OsKeNa_11g0014741.01 | Chr11 | 19065931 | 19071039 | - | IsoSeq | ||
| CDS seq | atgactagttatgatgtgatctctcaggaacagctagttgctttgaaactcaggaattcggtggaaggtttggttcagttatgtgcagttcaagaggagcatactaatctgccagtgccaccgcaaattcagacattgatatctgaattttctgttctccttgaagaacctactgcattaccaccagagcgcccttatgatcacaccattccattgttacctttggttgttcctgtcaatgtgagaccataccgttatacaccagctcaaaaagatgagattgaaaggcaagttaaagacatgttgcaaaaaggaattattcagccaagtgctagtcccttttcctccccagttttgcttgtgaagaaaaaggatggttcatggcgtttttgtgtggattatcgtcacttgaatgccataacaatcaagaacaagtaccccttgccaatcattgatgaattgttggatgaattggccggtgcttgttggttttctaaattggacttatgttccggttatcatcaaattcgaatggcagctggagaagagccgaaaactgcttttaaaactcataatggacattatgagtttaaggtaattcctttcggtctcacaagtgcacctgcaacttttcaaggtgtcatgaattcagttttggccgaacatttgcgtcacagtgtgctagtttttgtcgatgatatcctcatttacagtaaaacattggctgaacatgagttgcatttgcgacaagtatttgagatcttacacaccaatcagttgcaagtcaagttatctaaatgctcgtttgctcaaccaagtgttgcttatctgggacatatcataagtgagcatggtgttgctactgatcctcagaagattcaggtagttaagacttggccggttccggtaaatgtgaaagaggttcgaagttttctgggtttagctggatattaccgcaaattattgcgtcattttggcattatcagtagaccattgacaaatttactcaagaag
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| Protein seq | MTSYDVISQEQLVALKLRNSVEGLVQLCAVQEEHTNLPVPPQIQTLISEFSVLLEEPTALPPERPYDHTIPLLPLVVPVNVRPYRYTPAQKDEIERQVKDMLQKGIIQPSASPFSSPVLLVKKKDGSWRFCVDYRHLNAITIKNKYPLPIIDELLDELAGACWFSKLDLCSGYHQIRMAAGEEPKTAFKTHNGHYEFKVIPFGLTSAPATFQGVMNSVLAEHLRHSVLVFVDDILIYSKTLAEHELHLRQVFEILHTNQLQVKLSKCSFAQPSVAYLGHIISEHGVATDPQKIQVVKTWPVPVNVKEVRSFLGLAGYYRKLLRHFGIISRPLTNLLKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.210491 | 0.223320 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35200 | RBH | 0.0 | 0.073127 | 0.033847 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0280500 | RBH | 0.078383 | 3.8326195 | 0.1931905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0293300 | RBH | 0.141053 | 3.34073 | 3.1005235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
