Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0013300 | OGI:11045580 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:16534690-16535557 | ||||||||
| Gene Symbol | SCP57, OsSCP57, OsSCP58, SCP58, SCP61, OsSCP61, OsSCP62, SCP62 | ||||||||||
| DNA seq | tcaatagtttaattgaaattaatctatatagttctctgttctgtcttctgtggcctaattacataatttacaaattaatcagtgcacaaaggacatcaacatgctacatgttcttgagccattttgtgaagacgtcgggagccccgggatccataacaatgaagcgacagatggaatgattaggctcatgctggagtctgcttctgctgctaatgatgacattattgaattcaagtgtagagttgagtgcataaaaacaatacaacattactgcatcccattgaattccaatttatctgttttccaattttccttggatagcacttgacctaagaaagtctaattttgcttatttactgcagaaagcttcttatgtggttttacaaatatgggcaaatgataaaactgtaagggagagtcttggtgtgcacatggtatttctactatggtactacgtatacatatatttggatttccatccaccagtagcaaagtgcatatattttgtggttacagtaaatttgggtggctttccgcatgaaattaggccgattatcatattacaaattctgcattgtccttacaaaaggctagtcattctttgaatccttttatatcagaataattctttgaactgaaatctcggccgatccgctgtgaagtccaagggaaagtactaatttgcattgcatgatagttgtgcatatatacgagtttaattcatagaagttgcaatacaattcagggaacagttggagagtggataagatgcaatttcgatgtagattacattgcagatgtgtattgtacagtggagtatcatttgacgctaatgagaaaaggataccgagcattgatatacaggtaa
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| CDS seq | atgctacatgttcttgagccattttgtgaagacgtcgggagccccgggatccataacaatgaagcgacagatggaatgattaggctcatgctggagtctgcttctgctgctaatgatgacattattgaattcaagtgtagaaaagcttcttatgtggttttacaaatatgggcaaatgataaaactgtaagggagagtcttggtgtgcacatgggaacagttggagagtggataagatgcaatttcgatgtagattacattgcagatgtgtattgtacagtggagtatcatttgacgctaatgagaaaaggataccgagcattgatatacaggtaa |
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| Protein seq | MLHVLEPFCEDVGSPGIHNNEATDGMIRLMLESASAANDDIIEFKCRKASYVVLQIWANDKTVRESLGVHMGTVGEWIRCNFDVDYIADVYCTVEYHLTLMRKGYRALIYR |
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| Function | Serine carboxypeptidase-like 13 [UniProtKB/Swiss-Prot:Q8H780] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0013300 | OsKeNa_11g0013300.01 | Chr11 | 16534690 | 16535557 | + | NAM | ||
| CDS seq | atgctacatgttcttgagccattttgtgaagacgtcgggagccccgggatccataacaatgaagcgacagatggaatgattaggctcatgctggagtctgcttctgctgctaatgatgacattattgaattcaagtgtagaaaagcttcttatgtggttttacaaatatgggcaaatgataaaactgtaagggagagtcttggtgtgcacatgggaacagttggagagtggataagatgcaatttcgatgtagattacattgcagatgtgtattgtacagtggagtatcatttgacgctaatgagaaaaggataccgagcattgatatacaggtaa
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| Protein seq | MLHVLEPFCEDVGSPGIHNNEATDGMIRLMLESASAANDDIIEFKCRKASYVVLQIWANDKTVRESLGVHMGTVGEWIRCNFDVDYIADVYCTVEYHLTLMRKGYRALIYR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.529170 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0461000 | RBH | 1.093553 | 0.968793 | 4.674829 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g27170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0461000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013350 | RBH | 0.508802 | 0.0 | 14.436690 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013270 | SBH | 0.000000 | 0.0 | 23.419521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013040 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013350 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0241400 | SBH | 0.194896 | 0.4106285 | 0.036605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0257200 | SBH | 0.142 | 0.384348 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013480 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012940 | SBH | 0.157372 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013300 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013080 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013280 | SBH | 0.0 | 0.0 | 0.623898 |
