Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0012110 | OGI:11038870 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:13855584-13857053 | ||||||||
| Gene Symbol | UCL35, OsUCL35 | ||||||||||
| DNA seq | acattcagatagatcatatcagacaagtaaatctagcttgctgtaaacacagttagttcgtaattatcgcatagggccatggggaagtacagtgtgggtctcgtggttttagggttgctggcccttgcgttttcgaccactgtgctggctgaaacacatgttgttggtgactccaacggttgggacttctctgtgtcgtttgatagctgggctgatggaaaggtcttcgctgctggtgacactcttggtatacacagagacagtctcgctctatatatcttctctctttatactactacctccttccctaaatgtttgacgccgttgatttttttaaatatatttgaccattcgtcttattcaaaaacttttgtgaaatatgtaaaactatatgtatacataaaaatatatttaacaatgaatcaaatggtaggaaaagaattaataattgcttaaattttttgaataagacgaacggtcaaacatattttaaaaagttaacggtgtcaaacatttagggatggagggagtatatataattctcgatgatatatatatcttttccgctctacatagctgatcagcataagtaacgtttttcaagccagttatatcagttaaaacgagtgcaaattaatagtttcttatattatgtcttgttgccaacacatgcgtccatatacatctaagacgctttcttttagttgctataagttatgccagaaggttgcaatggtgaaatcatggttgtatgacttcacacatcagaatttaaattcccatgtccatgaatataaccgcgtgcatatttagttgttacggagatcggaagttacacttccctttctgtaaagaacaaaaatatatcactcatcgtcctgactacactgctgtctgctctctgcacatatatatatatatatatgcatgcagttttcaactacaaaccgggcgcacacaacgtgctggccgtggacgcggcgacgtacaggagctgcaaggtgggcagctcggcggactcggtggcggcggcgacggggaccgcgtcgttcctcctcaagaagggcgtcaactactacatctgcggcgtccccggccactgcgccgccgggatgaaactccgggtcgtcgccaactgatgaaactccggcgacagatcaatcccttaattaattaaaactatgtgggtgtctctgcagcctgaagcagcatatagcttgctcggtttagggattggtcgcgtatatatagttgtaattgtagccctatgtactggagtggctgacactgggtctgtcatgctcctgcatctgcatgcgtgcatggctgcatgctatatatcagctttgtgcgttctaaataatggcccgaatgtgcacctgtgtggctgtgtggctgtttgttggaacttggaagtacttatatataatatatagttcccttctatggatggagattcacaaaataaaa
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| CDS seq | atggggaagtacagtgtgggtctcgtggttttagggttgctggcccttgcgttttcgaccactgtgctggctgaaacacatgttgttggtgactccaacggttgggacttctctgtgtcgtttgatagctgggctgatggaaaggtgggcagctcggcggactcggtggcggcggcgacggggaccgcgtcgttcctcctcaagaagggcgtcaactactacatctgcggcgtccccggccactgcgccgccgggatgaaactccgggtcgtcgccaactga |
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| Protein seq | MGKYSVGLVVLGLLALAFSTTVLAETHVVGDSNGWDFSVSFDSWADGKVGSSADSVAAATGTASFLLKKGVNYYICGVPGHCAAGMKLRVVAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0012110 | OsKeNa_11g0012110.01 | Chr11 | 13855662 | 13857053 | + | NAM | ||
| CDS seq | atggggaagtacagtgtgggtctcgtggttttagggttgctggcccttgcgttttcgaccactgtgctggctgaaacacatgttgttggtgactccaacggttgggacttctctgtgtcgtttgatagctgggctgatggaaaggtgggcagctcggcggactcggtggcggcggcgacggggaccgcgtcgttcctcctcaagaagggcgtcaactactacatctgcggcgtccccggccactgcgccgccgggatgaaactccgggtcgtcgccaactga
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| Protein seq | MGKYSVGLVVLGLLALAFSTTVLAETHVVGDSNGWDFSVSFDSWADGKVGSSADSVAAATGTASFLLKKGVNYYICGVPGHCAAGMKLRVVAN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0012110 | OsKeNa_11g0012110.02 | Chr11 | 13855584 | 13857044 | + | IsoSeq | ||
| CDS seq | atgttgttggtgactccaacggttgggacttctctgtgtcgtttgatagctgggctgatggaaaggtcttcgctgctggtgacactcttgttttcaactacaaaccgggcgcacacaacgtgctggccgtggacgcggcgacgtacaggagctgcaaggtgggcagctcggcggactcggtggcggcggcgacggggaccgcgtcgttcctcctcaagaagggcgtcaactactacatctgcggcgtccccggccactgcgccgccg
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| Protein seq | MLLVTPTVGTSLCRLIAGLMERSSLLVTLLFSTTNRAHTTCWPWTRRRTGAARWAARRTRWRRRRGPRRSSSRRASTTTSAASPATAPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 25.275831 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0428800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24140 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0428800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012090 | RBH | 0.0 | 32.963047 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012030 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012040 | RBH | 0.0 | 5.723907 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011780 | RBH | 0.089825 | 0.617648 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012190 | RBH | 0.0 | 147.192398 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0207300 | RBH | 0 | 83.8848875 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012010 | RBH | 0.0 | 6.985985 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0218500 | RBH | 0 | 5.757787 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012080 | SBH | 0.0 | 0.307618 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011840 | SBH | 0.0 | 48.287994 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011770 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012050 | RBH | 0.0 | 6.022171 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011960 | RBH | 0.0 | 8.617079 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011950 | RBH | 0.0 | 551.604065 | 0.0 |
