Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0011950 | OGI:11038190 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:13575109-13578761 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaccattcatggcatgcgcctcgccaccggtactcgcgctggccctgctcgcgtcgtgcggtgcctttctcgccacctccatgctcccggcgcgtgcgacggcgagcagctgcttggacgtcggcgacatggtgatgatggacaggttccgcgcttggcagggagctcacaaccggtcgtacccgagcgcagaagaggcgctgcagcggttcgatgtgtaccgccgcaacgcggagttcatcgacgccgtcaacctgcgcggcgacctcacttaccagctcgccgagaacgagttcgcagacctcaccgaggaggagttcctggccacgtacaccgggtactacatcggcgatggccccgtggacgacttcgttttcacgacgggtgccggagacgtcgacgccagcttctcctaccgcgtggacgttccggccagtgtcgactggagggcccaaggcgccgttgtgcctcccaagtcccaaacttcaacatgcagtacgtgtaaatttcacgcatgtttccatttcaaacgtaaaatataccttgattattaattcttaactgcattggacctacgttacgtacgcctgcaggcactacaccacgacctaaatccgctgtctcagaatctgtcggcaaagcacccatgtgccagcaaattatctgtcagaaaaggttttcccgacagataaggtctgtcaggacaagtgctgccgggaaaagtcttttccgacagatacttttttaccaacagattgatagacagtactacaaaagaattgccgactgatactttttaccgacggatggccctttaccggcagttaatggaatgccgacagatcagttattagcaaaaatcacttttgccggcaaatattctgtcagtgtgcctttcatggggtaaaaaaaaaagaattagattcatggaagaatcctaatggccaacaccaaatggtcaatagttcccacaaaacgcatactcaccagtagtggatgcactatttacatttaattgaaaacaccatgtacacagaataattatacaatccatctccaaatctaactatacaatctacctactgtcacaaagagacaacaaatctagaatagcatcttaagcatcaaaatttaagcacacacaaatccgaattactgtcaacaagaaacagtgctattgtttaacagcaagaaccaaggttgggaaaatgtgtgtctgcattagctcccaacaaacaagtatctagcacaagtccctggatttcattgtaggaaaatatatcatctaggactccctgataaagtagtttcactggccccttactgtggattaacattcggcattacctcattcaaaattgttcatgtttcctgatattttatcagctaacagcttgatcactatgtggattttagtttcgagcacgacgacccaacatattcaaaataagtgatttcagatgctctggtaagtgcctgaattgcatgtgataaatcccccgcgcttcatcgcctacctttggcatcgatgactcaattcacagattcactacgttttgattatgcccgtcttactttgctgcagtataatgcagctctggcttcctcgaggccacaacaacagcctactgttgagcaatagcaattctaccaaaactatgggtacagcagataaggtataagttttcaagaactcacctgcgccggccacgactctcctcttgaaagcggtcaccgctggcctcccggtgccacatctccgggagcggcacgtcgtcggggtcgcttacatactcctcctcctccttgtcatcatccccggtccccgccgtctccacctcctccggcgtcagcggcaccaccgggggcttgccggcggcgtggaaggaaggccagcaagattaaaataagattaagtcactagaaaatcctttgagatgtactactactgcgaaaccaaaaatcggagctgaaaattaagatcaaaccaataagcactctcccatgtcagtcataaggcttcacaagtgaaatatgagccttcaagcaactgcctgcatgcttcgtatccaaaatgcagaagcatttatcccctgttgcataagtactcacttcgtacttggattaatcagtggcataatcttgccccaattgttttgcacattgaaatggtacacgtagttgctcaattagaggtaatccgagaggcaaatgtggattttactcatacacaaacacgctgatcgcgcagcgaaccaccaaattccccagcgggcggaacctgaagcaacaccaccaccgcaaaatcaaccactacccgtaccggcaacaccttggaagccatgaacctagggtttggagttggggatttacctcatagaggctcttgctctctacggcggccggcgcgggctcctgctcctcctcaccactgccgtcgccgtcgcgggaaaccctagccttcctcttgcggcccatctggtggaagcggtagtggaggcggcatgcggtggtggatttggcggagaagtggcggcgcacggtggtggatttggcggagaagtggcggtgcgccgcggcggagaaggaggagaaggaggccgcgcgccgcggcgatggatttggcggagaagtggcgacgcgcggtggaaagcggacgaagtggcacagcgcctagggttttttttttgcgtggattttcttttcggcgtgatattttttggcgtggatttctttttttcagccgagcaatcacctcgctgactcgctctatccgaaccgtgggatcaagatcagacggaagaaacattgctgacagatggaatatcgttaagttttcctgacatataattggtttccactctaaatattgctgacagttattttgacccaataaatatttggaattgctgacatataacatgtcttattacatagtattgccgacatataatttgccaaaagcctttaccaataaatagtctatcaataattgtttatttttaccgacagatgtctgttggtaatctagtgtcatggtgtagtgaggtagctgctgggcgttcgtgacagcggcgaccatcgagagcctgaacatgatcaagacgaggaggctggtctctctatcggagcagcagctggtggactgcgacagctatgacggtggctgcaacttagggtcgtacgggcgggcgtacaaatgggttgtcgagaacggtggcctcaccacggaggcggactacccgtacacggcgcggcggggcccccgcaaccgcgccaagtccgcgcaccatgccgccaagatcaccggcttcgggaaggtgacgccgcggaacgaggcggcgttgcaggctgccgtcgctcgacagcccgtggctgtggccatcgaggtcggtagcgggatgcagttctacaagggtggcgtttacacgggcccgtgcggcacgtgcctggcgcacgccgtcaccgtcgtcggtacggcaccgacgcggcttccggtgccaagtactggaccatcatgaactcatggggccagtcatggggcgagcgcggctacatccggattctccgcgacgtcggtggccccggcctgtgtggcgtcacactcgatgtcgcctacccgaccctgacctgtgaacgaacggcatga
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| CDS seq | atggcaccattcatggcatgcgcctcgccaccggtactcgcgctggccctgctcgcgtcgtgcggtgcctttctcgccacctccatgctcccggcgcgtgcgacggcgagcagctgcttggacgtcggcgacatggtgatgatggacaggttccgcgcttggcagggagctcacaaccggtcgtacccgagcgcagaagaggcgctgcagcggttcgatgtgtaccgccgcaacgcggagttcatcgacgccgtcaacctgcgcggcgacctcacttaccagctcgccgagaacgagttcgcagacctcaccgaggaggagttcctggccacgtacaccgggtactacatcggcgatggccccgtggacgacttcgttttcacgacgggtgccggagacgtcgacgccagcttctcctaccgcgtggacgttccggccagtgtcgactggagggcccaaggcgccgttcagctggtggactgcgacagctatgacggtggctgcaacttagggtcgtacgggcgggcgtacaaatgggttgtcgagaacggtggcctcaccacggaggcggactacccgtacacggcgcggcggggcccccgcaaccgcgccaagtccgcgcaccatgccgccaagatcaccggcttcgggaaggtgacgccgcggaacgaggcggcgttgcaggctgccgtcgctcgacagcccgtggctgtggccatcgaggtcggtagcgggatgcagttctacaagggtggcgtttacacgggcccgtgcggcacgtgcctggcgcacgccgtcaccgtcgtcggtacggcaccgacgcggcttccgtactggaccatcatgaactcatggggccagtcatggggcgagcgcggctacatccggattctccgcgacgtcggtggccccggcctgtgtggcgtcacactcgatgtcgcctacccgaccctgacctgtgaacgaacggcatga
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| Protein seq | MAPFMACASPPVLALALLASCGAFLATSMLPARATASSCLDVGDMVMMDRFRAWQGAHNRSYPSAEEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYYIGDGPVDDFVFTTGAGDVDASFSYRVDVPASVDWRAQGAVQLVDCDSYDGGCNLGSYGRAYKWVVENGGLTTEADYPYTARRGPRNRAKSAHHAAKITGFGKVTPRNEAALQAAVARQPVAVAIEVGSGMQFYKGGVYTGPCGTCLAHAVTVVGTAPTRLPYWTIMNSWGQSWGERGYIRILRDVGGPGLCGVTLDVAYPTLTCERTA |
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| Function | Cysteine protease XCP1 [UniProtKB/Swiss-Prot:O65493] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0011950 | OsKeNa_11g0011950.01 | Chr11 | 13575109 | 13578761 | + | NAM | ||
| CDS seq | atggcaccattcatggcatgcgcctcgccaccggtactcgcgctggccctgctcgcgtcgtgcggtgcctttctcgccacctccatgctcccggcgcgtgcgacggcgagcagctgcttggacgtcggcgacatggtgatgatggacaggttccgcgcttggcagggagctcacaaccggtcgtacccgagcgcagaagaggcgctgcagcggttcgatgtgtaccgccgcaacgcggagttcatcgacgccgtcaacctgcgcggcgacctcacttaccagctcgccgagaacgagttcgcagacctcaccgaggaggagttcctggccacgtacaccgggtactacatcggcgatggccccgtggacgacttcgttttcacgacgggtgccggagacgtcgacgccagcttctcctaccgcgtggacgttccggccagtgtcgactggagggcccaaggcgccgttcagctggtggactgcgacagctatgacggtggctgcaacttagggtcgtacgggcgggcgtacaaatgggttgtcgagaacggtggcctcaccacggaggcggactacccgtacacggcgcggcggggcccccgcaaccgcgccaagtccgcgcaccatgccgccaagatcaccggcttcgggaaggtgacgccgcggaacgaggcggcgttgcaggctgccgtcgctcgacagcccgtggctgtggccatcgaggtcggtagcgggatgcagttctacaagggtggcgtttacacgggcccgtgcggcacgtgcctggcgcacgccgtcaccgtcgtcggtacggcaccgacgcggcttccgtactggaccatcatgaactcatggggccagtcatggggcgagcgcggctacatccggattctccgcgacgtcggtggccccggcctgtgtggcgtcacactcgatgtcgcctacccgaccctgacctgtgaacgaacggcatga
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| Protein seq | MAPFMACASPPVLALALLASCGAFLATSMLPARATASSCLDVGDMVMMDRFRAWQGAHNRSYPSAEEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYYIGDGPVDDFVFTTGAGDVDASFSYRVDVPASVDWRAQGAVQLVDCDSYDGGCNLGSYGRAYKWVVENGGLTTEADYPYTARRGPRNRAKSAHHAAKITGFGKVTPRNEAALQAAVARQPVAVAIEVGSGMQFYKGGVYTGPCGTCLAHAVTVVGTAPTRLPYWTIMNSWGQSWGERGYIRILRDVGGPGLCGVTLDVAYPTLTCERTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.118210 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0425100 | RBH | 0.031731 | 0.065084 | 3.320534 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g23770 | RBH | 0.021458 | 0.043774 | 1.114176 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0425100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011930 | RBH | 0.0 | 0.0 | 3.313952 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008550 | RBH | 0.000000 | 0.000000 | 45.210125 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0011880 | RBH | 0.0 | 0.0 | 9.407581 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009120 | SBH | 0.0 | 0.0 | 58.479900 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0202100 | RBH | 4.9090835 | 18.8816225 | 33.4783345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011830 | RBH | 0.0 | 0.0 | 5.993073 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0211000 | RBH | 0.029831 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011590 | RBH | 0.0 | 0.0 | 0.911095 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011770 | RBH | 0.735818 | 0.344803 | 3.361411 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011760 | RBH | 0.000000 | 0.0 | 44.089161 |
