Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0009370 | OGI:11024630 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:8448337-8449144 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaggaaacaaaacagtacatggatggagtgcaggggattaccagccatggcagagaagatgaagcaacaaagctccagcaaaggagaagatggcatcagtggcttgggcttccgaagtggatggcgagagggcggctctggttccacgacggcagcagcgcctctgcgtgcaggcgacggcgaccgaacatgaaggagcaacgtggttcaccaccgatgatggcatttagttggtggctgtttggaaacaggacaacgatgacgtgctttgtgatatgcaaatggaatcacgatcacgtgcacgcacaggacgataaattgggaagaaaaaaaatgatgaaggaggtggatgtagggcaggtgtttaccgcaaaggagaagttgcagcagcagcGggtggttgacagagaatcgtcggcgctggtggacagcttgataaaagatagcacaggaggcggtggatgggcaaaacaacgttgcaccaatCcccggcaattgagggacctctcgatgatgtagcagtgtttgaaacaagaagacgatggcaacggcttgacctcccggcagccagcagagaggcggcttgcaggcgtgatggcagccgtcctccctcgggctgcgacgatggcaccggctcgaggtaccgagcagcaggacaatGgcgtacaagcgaagtgggagagcttcaatgctgcagcacggtgttgcggaagcagcagcagcagcaacagcagcacggcatggctggggcagtggtgtggtggttaaacaaagaggaaaggaagaggggtgctgcagctattag
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| CDS seq | atggaggaaacaaaacagtacatggatggagtgcaggggattaccagccatggcagagaagatgaagcaacaaagctccagcaaaggagaagatggcatcagtggcttgggcttccgaagtggatggcgagagggcggctctggttccacgacggcagcagcgcctctgcgtgcaggcgacggcgaccgaacatgaaggagcaacgtggttcaccaccgatgatggcatttagttggtggctgtttggaaacaggacaacgatgacgtgctttgtgatatgcaaatggaatcacgatcacgtgcacgcacaggacgataaattgggaagaaaaaaaatgatgaaggaggtggatgtagggcagccgtcctccctcgggctgcgacgatggcaccggctcgaggtaccgagcagcaggacaatGgcgtacaagcgaagtgggagagcttcaatgctgcagcacggtgttgcggaagcagcagcagcagcaacagcagcacggcatggctggggcagtggtgtggtggttaaacaaagaggaaaggaagaggggtgctgcagctattag
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| Protein seq | MEETKQYMDGVQGITSHGREDEATKLQQRRRWHQWLGLPKWMARGRLWFHDGSSASACRRRRPNMKEQRGSPPMMAFSWWLFGNRTTMTCFVICKWNHDHVHAQDDKLGRKKMMKEVDVGQPSSLGLRRWHRLEVPSSRTMAYKRSGRASMLQHGVAEAAAAATAARHGWGSGVVVKQRGKEEGCCSY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0009370 | OsKeNa_11g0009370.01 | Chr11 | 8448337 | 8449144 | + | NAM | ||
| CDS seq | atggaggaaacaaaacagtacatggatggagtgcaggggattaccagccatggcagagaagatgaagcaacaaagctccagcaaaggagaagatggcatcagtggcttgggcttccgaagtggatggcgagagggcggctctggttccacgacggcagcagcgcctctgcgtgcaggcgacggcgaccgaacatgaaggagcaacgtggttcaccaccgatgatggcatttagttggtggctgtttggaaacaggacaacgatgacgtgctttgtgatatgcaaatggaatcacgatcacgtgcacgcacaggacgataaattgggaagaaaaaaaatgatgaaggaggtggatgtagggcagccgtcctccctcgggctgcgacgatggcaccggctcgaggtaccgagcagcaggacaatGgcgtacaagcgaagtgggagagcttcaatgctgcagcacggtgttgcggaagcagcagcagcagcaacagcagcacggcatggctggggcagtggtgtggtggttaaacaaagaggaaaggaagaggggtgctgcagctattag
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| Protein seq | MEETKQYMDGVQGITSHGREDEATKLQQRRRWHQWLGLPKWMARGRLWFHDGSSASACRRRRPNMKEQRGSPPMMAFSWWLFGNRTTMTCFVICKWNHDHVHAQDDKLGRKKMMKEVDVGQPSSLGLRRWHRLEVPSSRTMAYKRSGRASMLQHGVAEAAAAATAARHGWGSGVVVKQRGKEEGCCSY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.193192 | 0.0 | 0.742888 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g15170 | RBH | 0.031941 | 0.027740 | 0.074292 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009500 | RBH | 0.382073 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009380 | RBH | 0.601034 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009260 | RBH | 0.963938 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0129300 | RBH | 0.266892 | 0.333559 | 0.054203 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009450 | RBH | 0.335913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009360 | RBH | 0.0 | 5.654387 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009250 | RBH | 0.0 | 0.0 | 0.693752 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009370 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009280 | RBH | 0.000000 | 0.0 | 0.789666 |
