Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0009010 | OGI:11023270 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:7967649-7973279 | ||||||||
| Gene Symbol | NLS1, OsNLS1, - | ||||||||||
| DNA seq | tgaatagcgaaattctacccaaaaaagagagaaaaaacagctgtgtgctagagagatataaggagagaggcaccattgtgctcttacaccagcacaacatgtgctgtgaatttgaaaggggaaataccagctatggaagcagcgatagtgagtgcttcgacgggagtgatgcgttccctcctcgccaagctcacaaaccttcttggtggtgagtacaagctacttaagtggctccgtagggagatggagttcctcgagagcgagctccgtagcatgagcatcttcttggagaggttggaggacacgcaaaagcttcacccccaaatgaaggattggagggatcgagtacgcgagttggcatacgacattgaggattgcatcgacgacttcatactacagcttgattccaaggatgcgaaggttgggtttgggcaaaagcttcttgcatcccgtaggattggccacatgattcgagaactcaaggcgcgtgtaatggaggagagtgagagacaaaggaggtacatgcttgatggcttggcatctgggcctagtgttcgtgtgaaggttgatccacggctatcggctctctatgtcgacgaggacagattagttggtattgatgccccgagagatgagatcattgggcggctgttggacaagcggagaagtgcctcagcaaaacaggtcatgacaatttccatcgtgggttgcggaggattggggaagaccacccttgccaatcaaatttactgcaaaatcaaaggaaaatttgagtgcgcagcttttgcgtcagtgttccaaaatcccaacaccaagaaggttttgacgaatattctttcccaagtggccactactgctgctgtggaagacgatgagcaagccatcatcaacaagctaagggaataccttagtgacaagaggtacgtacaccaccatccctatgtttttttttatgacgttttaatatggattaggatctaatactccctctatttttactttggccaagtttacagagaaattttagcaacatctataacaacaaatttgttttattaaaactaacatacaatatatttgataatatgtttgttttgtgttgaacatgttactatattttttataaacctagtcaaacataaaaaaaattaactaacaaaagagtcaaaacgattaatgatatgaaacatatgtagtaattgatattcctagtataccatgtagggtactacactcaagggtaatatagacttttcgctaatcctatacacctcacatgctacaaatgctgatctaatatggtacttctccacactccttgtaagtggcacaggtgctccgtagcaattgagacctgccaataatccttccatttatccttatatgcgtgaacccgccatgggcattcatctttctccttCAcacacacctcacctcataaacatttttgcatgacttctctaccctcaactccctttgaatcttccaatggaaaaagtacgaattacaccccccccccgaactatcgcggttgaccgaattaccccctacccgattgagatgacttaatctctatcgggcattaactaaagaccatcacagatgactcatccgtgacggactctatactaatgcccgattgagatgacttaatctttatcgggcattaactaaagcccatcactgatgattatttttccattttccatatgaaatgtttatattcaatttatgtggtattttttattttcaatttatgagaactttaaatataattttaggctgatttttgtgtttcaaatgtaaaaaACacaaacaacaaaattgtacaactcatcgagatttacaactattgtattggtcctttttacaaataagtacatttgaacaatttaaattttgaatgttcaaaatttgacatcttcgaacaaaaatagggttaataaatgatatcaaatagaaaagtcaccaaaaccaaaattgtagaattcatcgaggtgcaaaatttttattttggtcatttttccatctgactctatttgaacaatttgaaatttgaaattcaaagtttgagaactttaaatagaattctttttattagtgaacgacttcaactgaaaagtcattaacaacaacaaagctgtataactcatcaaggtctataacttttattttggtcatttttctatataacgttttttaacaatttgaatttgaatttgaaaatatgacaacttcaaataacatttttaaatactaaatgatttcaactagaaaagtcatcaacaacaaagttgtataacacatcaagatctataacttttatttcggtcatttctttattcgacaaagtgatagtaacattgttcacaaaattcacatatctctcatctagctattttatgaacaatgttactaacactttgtcagatgaaaaaatgacaaaaataaaagttatagatcttgataagttatacaactttgttgttgatgacttttttagttgaaattatttagtatttgaaaatgttgttttgaagttatcatattttcaaattcaaattcaaactattcAaaaaaagttatatagaaaaatggccaaactaaaagttgtaaatcttgataagttatacaattttgttgttgacaattttttcatttggaatcatttagtatttgaaaatgttatttgaagttgtcatatttttaaattcaaattcaaactgttAaaaaaagttatatagaaaaatgaccaaactaaaagttgtaaatcttgataagttatacaattttgttgttgacaatttttccatttgaaatcatttactacccgaaaaattattttgactaataaaataaattattatactgcagttaattattttgctacaggtcaacttacaatataaacatttcatataaaaaatagaaaaatactcatcggtgatgggcattagttaaaccctgatagagattaagtcatatcaatcgagcattagtatagagcccgtcatatcaatcgggcctagtttgtatctaaatcGggcccaagttggtgcccgtcacggatgacagccaacttgaggcccgattgagatatggaatgttatctcaatcaggcctaaactacggcctgtcacgaatagattttattcgtgacgggcctgagttttatacccatctaacatgtctgtgcgaccatatctcaatcggacgctttatcggcccgattgagataacttccttgtgacagcccgctaattccaggcatgttagaggcagccacagatggaaggatctgtacttgtgtcagataagcataaaaatttcgtctagctccattgctcatgctccctttttactttttttttagtttttttgtcactcattttaatataagaattaatagttatttgagatttattttcctatttacatgtaataattaaggtagtacatggttattcctcagaaaactgtaactccgtgcgtgcataactcaaacatgtgatgtgttacacaggtacattgtcatagttgatgatatatgggatatgcaaatatggaaatttattgaatgtgcgttggtcaagaactgccgtggtagcagaattatcacaacaacacgtatacatgatattgctaaattgtgctgttcatctcatggcgattatatttacgaaatgaagcctcttggagttattgactccaaaatattgttcgacaaaagaatttttgatccagaggaaaggcgcccaccgcagttgacagaagtttctgaggaaatattgaaaaaatgtggtggtttgcctttggcgatcatttccatatcaagtttgttggcaagcaaaccaaagtcAaaagatcaatgggacagggtcaaggtttctcttagctctacgcttgaaaggactccagacattgaaaccatggaatgggtgctatcactcagttactctgatcttcctaatcatttaaaaacatgtctgttatatttgagtatattccctgagggctatgagataaacagggaacgtttggtgagtagatggattgctgaaggattcatttacaaaaaacatggacaaaatccatatgaagtgggggacagttattttaatgagcttgtgaacagaagcttgattcaaccagcaaacattaagcctgatggtcagacaaatgcttgtcgagtggatgacaccgttcatgattttattgtgtccatgtcagttgaagaaaatttcgttacattatttggtggttcaaaattggtaccaaggtcacatggtaaggttcgtcgattatctattcaaaatggcggcattcaagaaaatattgtcacatcaacgcacttggttacatcgcaagtccggtcactaactttatttgctgtagaaatgccatctcttttaggttttggtatgttacgtgtattggacctagaagattgttatgcattagaagaccatcatcttacgaacctggaaaggctagtccagttacggtatttgagtataagaacatcacccattagtgaactcccgaaacaaattgggcagcttcaatatctggaaacactagatttaagagctacgggtgtggaagaattgccatcaaccattggtagactaaagagtttggtccgtttattcgttgattatcatgttaaattaccaaaagaaatcagcaatatgcatgcactggaagagctaacaagtttctcagccttgatgtactctccagactttctgaaagaactaggtcagcttacaaacatgagggtgctccgagtaatttgtgactgtgatagctttaaaggtgatgcaggaagttgcttggaaaatttagcttcttctttatgtaatctaggcacatataaccttcattcccTttttgttgacatcaatggatatggtgaagacaacttctcactagatacatggcaacctgttccatctagactaagaagattttccattgaccggtggtgccccatcaataagattccgaattgggtgggttcactgatcaaccttgaagagttagtcctatatgtcaacaaaatttggcaggaggatttcgaattgctaggacatatgcctgctctgtcatctctgaccatatactcaaatactgcccttcaagggaggatcatcatcagtggattccattctaccaagtttttcaagttctattgcaatcctgcagggttaacctttgacgcaggaagtctgttaaagctcgaatgccttgatgtcataatgaatgtgttcaacacgaagtcttcaaatggtagctttgattttggcattcaatatcttaccaaccttagaaatgtctacattcaacttgattgtaatgggtcgactggtggagaattggaagcagctaaagcttccatcaagagctcagtaaacaaacttccaggacagcctaagctgaacttgagcacattgaatgaaaatatgttagtccatgaagaagctaattaattaaatggaaggggacgtaaatttcgagtacgaacattgcaggtatcaatttcggttttgaTtttttttttttttttgcagaaaggaccagtaccaaaaataccatttgtaatttatagtctaacaattctttacccat
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| CDS seq | atggaagcagcgatagtgagtgcttcgacgggagtgatgcgttccctcctcgccaagctcacaaaccttcttggtggtgagtacaagctacttaagtggctccgtagggagatggagttcctcgagagcgagctccgtagcatgagcatcttcttggagaggttggaggacacgcaaaagcttcacccccaaatgaaggattggagggatcgagtacgcgagttggcatacgacattgaggattgcatcgacgacttcatactacagcttgattccaaggatgcgaaggttgggtttgggcaaaagcttcttgcatcccgtaggattggccacatgattcgagaactcaaggcgcgtgtaatggaggagagtgagagacaaaggaggtacatgcttgatggcttggcatctgggcctagtgttcgtgtgaaggttgatccacggctatcggctctctatgtcgacgaggacagattagttggtattgatgccccgagagatgagatcattgggcggctgttggacaagcggagaagtgcctcagcaaaacaggtcatgacaatttccatcgtgggttgcggaggattggggaagaccacccttgccaatcaaatttactgcaaaatcaaaggaaaatttgagtgcgcagcttttgcgtacattgtcatagttgatgatatatgggatatgcaaatatggaaatttattgaatgtgcgttggtcaagaactgccgtggtagcagaattatcacaacaacacgtatacatgatattgctaaattgtgctgttcatctcatggcgattatatttacgaaatgaagcctcttggagttattgactccaaaatattgttcgacaaaagaatttttgatccagaggaaaggcgcccaccgcagttgacagaagtttctgaggaaatattgaaaaaatgtggtggtttgcctttggcgatcatttccatatcaagtttgttggcaagcaaaccaaagtcAaaagatcaatgggacagggtcaaggtttctcttagctctacgcttgaaaggactccagacattgaaaccatggaatgggtgctatcactcagttactctgatcttcctaatcatttaaaaacatgtctgttatatttgagtatattccctgagggctatgagataaacagggaacgtttggtgagtagatggattgctgaaggattcatttacaaaaaacatggacaaaatccatatgaagtgggggacagttattttaatgagcttgtgaacagaagcttgattcaaccagcaaacattaagcctgatggtcagacaaatgcttgtcgagtggatgacaccgttcatgattttattgtgtccatgtcagttgaagaaaatttcgttacattatttggtggttcaaaattggtaccaaggtcacatggtaaggttcgtcgattatctattcaaaatggcggcattcaagaaaatattgtcacatcaacgcacttggttacatcgcaagtccggtcactaactttatttgctgtagaaatgccatctcttttaggttttggtatgttacgtgtattggacctagaagattgttatgcattagaagaccatcatcttacgaacctggaaaggctagtccagttacggtatttgagtataagaacatcacccattagtgaactcccgaaacaaattgggcagcttcaatatctggaaacactagatttaagagctacgggtgtggaagaattgccatcaaccattggtagactaaagagtttggtccgtttattcgttgattatcatgttaaattaccaaaagaaatcagcaatatgcatgcactggaagagctaacaagtttctcagccttgatgtactctccagactttctgaaagaactaggtcagcttacaaacatgagggtgctccgagtaatttgtgactgtgatagctttaaaggtgatgcaggaagttgcttggaaaatttagcttcttctttatgtaatctaggcacatataaccttcattcccTttttgttgacatcaatggatatggtgaagacaacttctcactagatacatggcaacctgttccatctagactaagaagattttccattgaccggtggtgccccatcaataagattccgaattgggtgggttcactgatcaaccttgaagagttagtcctatatgtcaacaaaatttggcaggaggatttcgaattgctaggacatatgcctgctctgtcatctctgaccatatactcaaatactgcccttcaagggaggatcatcatcagtggattccattctaccaagtttttcaagttctattgcaatcctgcagggttaacctttgacgcaggaagtctgttaaagctcgaatgccttgatgtcataatgaatgtgttcaacacgaagtcttcaaatggtagctttgattttggcattcaatatcttaccaaccttagaaatgtctacattcaacttgattgtaatgggtcgactggtggagaattggaagcagctaaagcttccatcaagagctcagtaaacaaacttccaggacagcctaagctgaacttgagcacattgaatgaaaatatgttagtccatgaagaagctaattaa
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| Protein seq | MEAAIVSASTGVMRSLLAKLTNLLGGEYKLLKWLRREMEFLESELRSMSIFLERLEDTQKLHPQMKDWRDRVRELAYDIEDCIDDFILQLDSKDAKVGFGQKLLASRRIGHMIRELKARVMEESERQRRYMLDGLASGPSVRVKVDPRLSALYVDEDRLVGIDAPRDEIIGRLLDKRRSASAKQVMTISIVGCGGLGKTTLANQIYCKIKGKFECAAFAYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRIHDIAKLCCSSHGDYIYEMKPLGVIDSKILFDKRIFDPEERRPPQLTEVSEEILKKCGGLPLAIISISSLLASKPKSKDQWDRVKVSLSSTLERTPDIETMEWVLSLSYSDLPNHLKTCLLYLSIFPEGYEINRERLVSRWIAEGFIYKKHGQNPYEVGDSYFNELVNRSLIQPANIKPDGQTNACRVDDTVHDFIVSMSVEENFVTLFGGSKLVPRSHGKVRRLSIQNGGIQENIVTSTHLVTSQVRSLTLFAVEMPSLLGFGMLRVLDLEDCYALEDHHLTNLERLVQLRYLSIRTSPISELPKQIGQLQYLETLDLRATGVEELPSTIGRLKSLVRLFVDYHVKLPKEISNMHALEELTSFSALMYSPDFLKELGQLTNMRVLRVICDCDSFKGDAGSCLENLASSLCNLGTYNLHSLFVDINGYGEDNFSLDTWQPVPSRLRRFSIDRWCPINKIPNWVGSLINLEELVLYVNKIWQEDFELLGHMPALSSLTIYSNTALQGRIIISGFHSTKFFKFYCNPAGLTFDAGSLLKLECLDVIMNVFNTKSSNGSFDFGIQYLTNLRNVYIQLDCNGSTGGELEAAKASIKSSVNKLPGQPKLNLSTLNENMLVHEEAN |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0009010 | OsKeNa_11g0009010.01 | Chr11 | 7967649 | 7973279 | + | NAM | ||
| CDS seq | atggaagcagcgatagtgagtgcttcgacgggagtgatgcgttccctcctcgccaagctcacaaaccttcttggtggtgagtacaagctacttaagtggctccgtagggagatggagttcctcgagagcgagctccgtagcatgagcatcttcttggagaggttggaggacacgcaaaagcttcacccccaaatgaaggattggagggatcgagtacgcgagttggcatacgacattgaggattgcatcgacgacttcatactacagcttgattccaaggatgcgaaggttgggtttgggcaaaagcttcttgcatcccgtaggattggccacatgattcgagaactcaaggcgcgtgtaatggaggagagtgagagacaaaggaggtacatgcttgatggcttggcatctgggcctagtgttcgtgtgaaggttgatccacggctatcggctctctatgtcgacgaggacagattagttggtattgatgccccgagagatgagatcattgggcggctgttggacaagcggagaagtgcctcagcaaaacaggtcatgacaatttccatcgtgggttgcggaggattggggaagaccacccttgccaatcaaatttactgcaaaatcaaaggaaaatttgagtgcgcagcttttgcgtacattgtcatagttgatgatatatgggatatgcaaatatggaaatttattgaatgtgcgttggtcaagaactgccgtggtagcagaattatcacaacaacacgtatacatgatattgctaaattgtgctgttcatctcatggcgattatatttacgaaatgaagcctcttggagttattgactccaaaatattgttcgacaaaagaatttttgatccagaggaaaggcgcccaccgcagttgacagaagtttctgaggaaatattgaaaaaatgtggtggtttgcctttggcgatcatttccatatcaagtttgttggcaagcaaaccaaagtcAaaagatcaatgggacagggtcaaggtttctcttagctctacgcttgaaaggactccagacattgaaaccatggaatgggtgctatcactcagttactctgatcttcctaatcatttaaaaacatgtctgttatatttgagtatattccctgagggctatgagataaacagggaacgtttggtgagtagatggattgctgaaggattcatttacaaaaaacatggacaaaatccatatgaagtgggggacagttattttaatgagcttgtgaacagaagcttgattcaaccagcaaacattaagcctgatggtcagacaaatgcttgtcgagtggatgacaccgttcatgattttattgtgtccatgtcagttgaagaaaatttcgttacattatttggtggttcaaaattggtaccaaggtcacatggtaaggttcgtcgattatctattcaaaatggcggcattcaagaaaatattgtcacatcaacgcacttggttacatcgcaagtccggtcactaactttatttgctgtagaaatgccatctcttttaggttttggtatgttacgtgtattggacctagaagattgttatgcattagaagaccatcatcttacgaacctggaaaggctagtccagttacggtatttgagtataagaacatcacccattagtgaactcccgaaacaaattgggcagcttcaatatctggaaacactagatttaagagctacgggtgtggaagaattgccatcaaccattggtagactaaagagtttggtccgtttattcgttgattatcatgttaaattaccaaaagaaatcagcaatatgcatgcactggaagagctaacaagtttctcagccttgatgtactctccagactttctgaaagaactaggtcagcttacaaacatgagggtgctccgagtaatttgtgactgtgatagctttaaaggtgatgcaggaagttgcttggaaaatttagcttcttctttatgtaatctaggcacatataaccttcattcccTttttgttgacatcaatggatatggtgaagacaacttctcactagatacatggcaacctgttccatctagactaagaagattttccattgaccggtggtgccccatcaataagattccgaattgggtgggttcactgatcaaccttgaagagttagtcctatatgtcaacaaaatttggcaggaggatttcgaattgctaggacatatgcctgctctgtcatctctgaccatatactcaaatactgcccttcaagggaggatcatcatcagtggattccattctaccaagtttttcaagttctattgcaatcctgcagggttaacctttgacgcaggaagtctgttaaagctcgaatgccttgatgtcataatgaatgtgttcaacacgaagtcttcaaatggtagctttgattttggcattcaatatcttaccaaccttagaaatgtctacattcaacttgattgtaatgggtcgactggtggagaattggaagcagctaaagcttccatcaagagctcagtaaacaaacttccaggacagcctaagctgaacttgagcacattgaatgaaaatatgttagtccatgaagaagctaattaa
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| Protein seq | MEAAIVSASTGVMRSLLAKLTNLLGGEYKLLKWLRREMEFLESELRSMSIFLERLEDTQKLHPQMKDWRDRVRELAYDIEDCIDDFILQLDSKDAKVGFGQKLLASRRIGHMIRELKARVMEESERQRRYMLDGLASGPSVRVKVDPRLSALYVDEDRLVGIDAPRDEIIGRLLDKRRSASAKQVMTISIVGCGGLGKTTLANQIYCKIKGKFECAAFAYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRIHDIAKLCCSSHGDYIYEMKPLGVIDSKILFDKRIFDPEERRPPQLTEVSEEILKKCGGLPLAIISISSLLASKPKSKDQWDRVKVSLSSTLERTPDIETMEWVLSLSYSDLPNHLKTCLLYLSIFPEGYEINRERLVSRWIAEGFIYKKHGQNPYEVGDSYFNELVNRSLIQPANIKPDGQTNACRVDDTVHDFIVSMSVEENFVTLFGGSKLVPRSHGKVRRLSIQNGGIQENIVTSTHLVTSQVRSLTLFAVEMPSLLGFGMLRVLDLEDCYALEDHHLTNLERLVQLRYLSIRTSPISELPKQIGQLQYLETLDLRATGVEELPSTIGRLKSLVRLFVDYHVKLPKEISNMHALEELTSFSALMYSPDFLKELGQLTNMRVLRVICDCDSFKGDAGSCLENLASSLCNLGTYNLHSLFVDINGYGEDNFSLDTWQPVPSRLRRFSIDRWCPINKIPNWVGSLINLEELVLYVNKIWQEDFELLGHMPALSSLTIYSNTALQGRIIISGFHSTKFFKFYCNPAGLTFDAGSLLKLECLDVIMNVFNTKSSNGSFDFGIQYLTNLRNVYIQLDCNGSTGGELEAAKASIKSSVNKLPGQPKLNLSTLNENMLVHEEAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0249000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14380 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0249000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009120 | RBH | 0.0 | 0.0 | 0.219222 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021390 | SBH | 0.045170 | 0.378130 | 0.222132 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009040 | RBH | 0.0 | 0.770641 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008860 | RBH | 0.0 | 0.040590 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008940 | RBH | 0.523941 | 20.130774 | 8.930035 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0122000 | RBH | 3.066209 | 49.2218055 | 0.036274 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008960 | RBH | 0.060586 | 0.812950 | 0.122693 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0125000 | RBH | 0.346398 | 2.870711 | 0.185669 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009040 | RBH | 0.125777 | 0.298650 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009130 | RBH | 0.049215 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009020 | RBH | 0.000000 | 34.296730 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008910 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009040 | RBH | 0.0 | 2.728632 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008950 | RBH | 0.000000 | 33.508770 | 2.144421 |
