Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0007220 | OGI:11017470 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:6021376-6027615 | ||||||||
| Gene Symbol | RLCK316, OsWD40-186, OsRLCK316, RLCK318, OsWD40-188, OsRLCK318 | ||||||||||
| DNA seq | aaatgctatagtgttgcttgcattgtgtcaacctgtccaaattaatgaaaagtttggaaggaaaaaagacttataaaactaaaaacacaagtaaaaacagtagtaagcttgtgcaggttgagactacatagatatcaactactctacatcatattacatttttttccccattgccatcccaattacaggacttggctaaatatgtctcctctccacactgttcaattggtcttctgaaagatatattccctaaagttaagtttagtgtcaatgtgccatattatctgcatccaatccaacttgccttggcaccaacagtttgaacatccttacctgttgctgagaccaggttgttcattacgaatttcagtaattactagtccagcctgatgacctatcacaaccctgcatcagtagattgtttgcattacgcaggtttcgcaATGGAGAGaTGGAGAGAAAGAACGTCTGGAATATCAACAAAGAATGAAGACCACATTCTGAGATGTCAACATATTACTAAAATTCATGTTTGCAGTCAAGCTTATCTTTCTTTCTTTTTCTTTCTTtttttgttgcagggaaaacttcttttaatttagacttgcagaagatgcagcgaagcagtaacatgctcaacctcaagatgaatagcagggtcctttttatcactcaccgttttgaacccttcaaacaaactatagcgccgacttttccaagttcaaagtccagtacaccctcaagcctagaaaattatgaaaaacaatatcatttctgaaacttctcacacaggaaaagtttttgaaccggcacatcctcctcgacgagccggcgcttttgcacatgaaaatttggcaagatcacatcacaagcctagaagttatggatgggcgcagttaatatagcagcttaggaacttacttgaaggtaattgagttccacagacgaactgtctcatcattagaacctgtaagtaggattggcaggtctggatgggaacaaacacaggtaacacaatccatatgccctatgagtatttgaacacaagtcctgctcttgcagtcccagatctgactcaacaagatgaaataattacaacggcatttccacAaaaaatgatcaagaggtatgacaatactcttgcaattaaaatgtcttaccctagccgttttgtccaaagaaccagttattatgtattgctgatttccacgagtgaagtaatcgaaacagctcactgcagatccatgcccaaacaatgtgaattcacgacgggaagaacggaaattccaaacctgcatttgccatattatagactttaattcaaaaattgtgtctatcaaaatgataggaggtaaaacctcaggccttcactgcacctgtacattcatcatggaagcagccgcaaatttgtatgaatcgtgagggttaaatttgattccatgtgctaggacaccttgcatgtcaaacatcctaatgcactcccagcccttgttccagtcccacatcttaattgggtcaagcaagccgaccgacagcacataaggctcagttggatgaacgtccaaacaggtgatgttccatgaatgagctttgaatctcttcacttgctgtacaggggattcgtatgtgtacactcttatgaaaccatcatgatatccaaccacaagccattgcttctgcgcaatcaacttggctgcgctagctgcagttttggagtgattgatatgttagcatttgctgttacaccaGgggtaaagtctatgggagcagtgagttaagtcaggtcaggaagcatgcctcttggtccaaatgagctttgaagcaggttcactgtttcctgtggacaaatatgtggaccaaccttagtcccagaacatccaacaccattcagtttgctaattataagcatggagaaacttacaatgaatttcactcgcataggcaaactttacaatgttaccactaatttttaagattaagagaaggtggttctttttatattcattatatcatcggtggtagttatctgatttacattgggtggtatacatatggtaaattcggaactaattattctgaaatttgtgttacaactgggttcagttttaagaaaatcgatttatgcagggagacatatttaaaagtagaaattgataagtattaaaatgggaaatgtgtttagtgttaatttgtatctttggaacttcctaatgtacaggtaccaaaaattaacactaaaaatagtatatacagcccactgggagtggtcacttacttgtgtatcacagttcaggatgtcaactgagccaaaaatattgcctgtcaaaatcctgcacacaagaaatttattatggtaaaagctggtaacagctgttttgcatatgctatgaaaggaaaagaaatgtattaggtgttcatcacatatatattctgaagtatctaaccttgattttgtgggctgtaacgactatgattatagtataacctaaccactagatgaagtaaagaattttcagcaggaaagagacaagcataaaacacaatgatcgttaaatcagaatgtactgaagaactaggactccctttttttcatgtaaaaagtctagaaaaaactcataatacctaatcttcactaaaaggagcttgaaagcaagtggacaatttattttagaaaaatgtagattttttacaaagtttattattgtaaagctggccaccaggtcatgactaatgaggcttttgaagggggctattttcttttcacgctttaaaataaaatgggatcatagcaagtaaactaaaggatgataaatttatctcttttagaaatgcaagaaaatcttggtttcaattatcaccatgagaacatgtagtttgtctcctcaaacaaaaagagatgacaatttcacgtaccatggctcagtgggatgggcatctatgggaatgtcaggattttccattggaatgatctgatcaaatgaaacagcaaccaaagtagacaaaattataagatatttgtgaaagggtttaccgatgtaacaaaagtaagcaattggcatgattccaacagaatatagagataaaatttcacctgatgcacttctcggtcctcttctttctctttgaaagaagaaccgttatggtgataagcttcttggtttacttgggtgtcacttaagttcaaatggctggccaacctgctctcaagggtgataaactcgtccctgtatgaggttggcttctcgcggtggtcgttgacgaaccggacctctgagccatggcttatcggcaactAaatgatatagccaatgtagtcaattaaagaagatttacatgcagctaaaaagtctttcaaatataaatacatgttcctttttgagtaagtggaaatacatgtattgtaatgtgcagctatgaaactatatacccaacaatgcaggtacataaaagagcaataattaatagggttcgaccattataaaacatattAaattattgaatagcctacttcacgtgattaaaaacagggttgatgtagaaaacttcaattaattttacttcttttttgtgaaactgcaattaattttacatttttgatcccctaaaaggataattgtcaacaaaatgcaatcccaaaatacagcggaagtgttgtgagacagagggatgttgattcctagaaatccctaacatacaaggagaacattctgaaaatgacgatcaccctagacacttagatcatctttgtggtattgcttttggtcgcggacgttttttcagtttcttaaatttgttatgtttgtatttggctcctgacgagggggttttctcctccgttactttcttctcttcttagtggaatgacgcgcaattcttttgcgtgttcgagaattaaaatagtcattctttaatatataaggaattttacagaataaataaagaacatgtcgccgcttcatttaccaaagtaaaataattccactttatgcctttatgaagagcttcacactaggtttatttttttaaaaaaaaacatgccagtaacaatattgattaccttgccaatcatagtttctgtctcattaatcttattgacgatatctaaaatattgggtcttttgtgtctatcaatctccacacatttcagagctatttcagtgcacgtcttcacctgttggcgatatgcttccaatgaggaaccattccatgttgcttgtaacctgactgtccaatttcctagtacctgcgaaattagaatgtaaagctaaactattaatattcaatacaaaaggagtagtttttcagagatgatcactgatcctgataaagacaaacaaaatttcttactagatcagtaaattcttgggaagacatttcagcacttctagagcgccctctaggtcctgcaattacgtttagcattacaacacccaagctgaatatgtctagcttgtttgagagtacattcttctctatgtattctggcggcaggtatccgctgcatatggacacatatgtaagagcatccttattagaaaaggattcaatcaaataagtaattgagcttacactgtcccaattggagtttgtgtgacccttgttttctcttcggtgaagagcttggacaatccaaaatctgcaagttttggcaccatgttcttgtccagcaatatattgcccggtttaagatccaaatggtaaataggtggcttcagtccctcgtggagatattttaaaccctcacatgtccctttaataattttgaaccgtgtaggccagtcaagaccatgaaattcgtctgcaaagatacagaaaagaggtatcaacataatagtaaacataatctaaatacccaggattatttttttcttagcgtgctaaggaatatactagaactggagaaacatcgtacctgaaagatgattctcaaggcttccaccggttaaatactcgaagcagagcgctctatgtattattgcagcaaaaactattcttcctttgtactctgcgtatttatgttgtgtttcatagcagtaggcaactagccgtacaatatttggatgctcgagcctcatgaggttctgaaattcattctcgaattgcttatcgtcaaatcctagagtatcattatgaagcatcttcactgcaatctcttttccatttctaaactctccctgttaaggatctattgtcagtacttaatacagcttgatttagcattactggtgaaaacatttgacaaggatgaaattgtaaagcatgtctttatttgctttgtagtcacagtatactacaattaagtatcatggacaataaaaggcggggcatggttaattgctcatcatagtaatataagtatgtgcaaacatgtagcgcatgcttattctttacaacccatacagtgctttgtcaagttattcgcaataaacaaatgatgccctcaacttaccttataaactgttccatatgcaccttgaccaatttttcgctcctcggagaatccgtctgtaatttcttctaacaatcggaatgttatatccgttgggtccatagttgaatctggagcttgatgtcggtgtcctggtttatgctagtaaagaaggccttctgcatgaggacaatacaaagtaagttacactgttaaagagcaagaagttgctactagctctagcactcaactcaacatcatctggctcttttttcttgccctttcattgttttgccttttgggttcctgatatcatccagattcaatcttgcattttgaagttgcgaagatggacaagtgatgagagagcagaaatttcacctgatttttgtagagaaaaaaattctgattcaccatctaaacaaatcattatcaattcaattttacccccaccgccgctcaacaagtaaaaactctcagaataattgaaatcgaagggttggtccatcatggcaatggggtcaccactcaccacccataagctcctctcctcatcatcttcttcgctcatctttttctctttctttcttctcaccttccccggctatttctcctcaagacgcgcctccacatcgggcgacggggctgcgccgccgccccgcgtagcggcgtcgccgcatcgggagcagcgaatcccgcaccaaccaacgaaccgtccgcgccgccaagcgggccaccgccatcctctCcccctcgccttctgccgcggcttcgccacctcccggcctcaccgggaagtccggcgatgccat
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| CDS seq | atggcatcgccggacttcccggtgaggccgggaggtggcgaagccgcggcagaaggcgaggggGagaggatggcggtggcccgcttggcggcgcggacgcataaaccaggacaccgacatcaagctccagattcaactatggacccaacggatataacattccgattgttagaagaaattacagacggattctccgaggagcgaaaaattggtcaaggtgcatatggaacagtttataagggagagtttagaaatggaaaagagattgcagtgaagatgcttcataatgatactctaggatttgacgataagcaattcgagaatgaatttcagaacctcatgaggctcgagcatccaaatattgtacggctagttgcctactgctatgaaacacaacataaatacgcagagtacaaaggaagaatagtttttgctgcaataatacatagagcgctctgcttcgagtatttaaccggtggaagccttgagaatcatctttcagacgaatttcatggtcttgactggcctacacggttcaaaattattaaagggacatgtgagggtttaaaatatctccacgagggactgaagccacctatttaccatttggatcttaaaccgggcaatatattgctggacaagaacatggtgccaaaacttgcagattttggattgtccaagctcttcaccgaagagaaaacaagggtcacacaaactccaattgggacagtcggatacctgccgccagaatacatagagaagaatgtactctcaaacaagctagacatattcagcttgggtgttgtaatgctaaacgtaattgcaggacctagagggcgctctagaagtgctgaaatgtcttcccaagaatttactgatctagtactaggaaattggacagtcaggttacaagcaacatggaatggttcctcattggaagcatatcgccaacaggtgaagacgtgcactgaaatagctctgaaatgtgtggagattgatagacacaaaagacccaatattttagatatcgtcaataagattaatgagacagaaactatgattggcaagatcattccaatggaaaatcctgacattcccatagatgcccatcccactgagccatggattttgacaggcaatatttttggctcagttgacatcctgaactgtgatacacaaaaccaccttctcttaatcttaaaaattagtggtaacattgtaaagtttgcctatgcgagtgaaattcattctagcgcagccaagttgattgcgcagaagcaatggcttgtggttggatatcatgatggtttcataagagtgtacacatacgaatcccctgtacagcaagtgaagagattcaaagctcattcatggaacatcacctgtttggacgttcatccaactgagccttatgtgctgtcggtcggcttgcttgacccaattaagatgtgggactggaacaagggctgggagtgcattaggatgtttgacatgcaaggtgtcctagcacatggaatcaaatttaaccctcacgattcatacaaatttgcggctgcttccatgatgaatgtacaggtttggaatttccgttcttcccgtcgtgaattcacattgtttgggcatggatctgcagtgagctgtttcgattacttcactcgtggaaatcagcaatacataataactggttctttggacaaaacggctaggatctgggactgcaagagcaggacttgtgttcaaatactcatagggcatatggattgtgttacctgtgtttgttcccatccagacctgccaatcctacttacaggttctaatgatgagacagttcgtctgtggaactcaattaccttcaagcttgagggtgtactggactttgaacttggaaaagtcggcgctatagtttgtttgaagggttcaaaacgggttgtgataggtcatcaggctggactagtaattactgaaattcgtaatgaacaacctggtctcagcaacaggtaa
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| Protein seq | MASPDFPVRPGGGEAAAEGEGERMAVARLAARTHKPGHRHQAPDSTMDPTDITFRLLEEITDGFSEERKIGQGAYGTVYKGEFRNGKEIAVKMLHNDTLGFDDKQFENEFQNLMRLEHPNIVRLVAYCYETQHKYAEYKGRIVFAAIIHRALCFEYLTGGSLENHLSDEFHGLDWPTRFKIIKGTCEGLKYLHEGLKPPIYHLDLKPGNILLDKNMVPKLADFGLSKLFTEEKTRVTQTPIGTVGYLPPEYIEKNVLSNKLDIFSLGVVMLNVIAGPRGRSRSAEMSSQEFTDLVLGNWTVRLQATWNGSSLEAYRQQVKTCTEIALKCVEIDRHKRPNILDIVNKINETETMIGKIIPMENPDIPIDAHPTEPWILTGNIFGSVDILNCDTQNHLLLILKISGNIVKFAYASEIHSSAAKLIAQKQWLVVGYHDGFIRVYTYESPVQQVKRFKAHSWNITCLDVHPTEPYVLSVGLLDPIKMWDWNKGWECIRMFDMQGVLAHGIKFNPHDSYKFAAASMMNVQVWNFRSSRREFTLFGHGSAVSCFDYFTRGNQQYIITGSLDKTARIWDCKSRTCVQILIGHMDCVTCVCSHPDLPILLTGSNDETVRLWNSITFKLEGVLDFELGKVGAIVCLKGSKRVVIGHQAGLVITEIRNEQPGLSNR |
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| Function | Coatomer subunit beta'-2 [UniProtKB/Swiss-Prot:Q6H8D5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0007220 | OsKeNa_11g0007220.01 | Chr11 | 6021376 | 6027615 | - | NAM | ||
| CDS seq | atggcatcgccggacttcccggtgaggccgggaggtggcgaagccgcggcagaaggcgaggggGagaggatggcggtggcccgcttggcggcgcggacgcataaaccaggacaccgacatcaagctccagattcaactatggacccaacggatataacattccgattgttagaagaaattacagacggattctccgaggagcgaaaaattggtcaaggtgcatatggaacagtttataagggagagtttagaaatggaaaagagattgcagtgaagatgcttcataatgatactctaggatttgacgataagcaattcgagaatgaatttcagaacctcatgaggctcgagcatccaaatattgtacggctagttgcctactgctatgaaacacaacataaatacgcagagtacaaaggaagaatagtttttgctgcaataatacatagagcgctctgcttcgagtatttaaccggtggaagccttgagaatcatctttcagacgaatttcatggtcttgactggcctacacggttcaaaattattaaagggacatgtgagggtttaaaatatctccacgagggactgaagccacctatttaccatttggatcttaaaccgggcaatatattgctggacaagaacatggtgccaaaacttgcagattttggattgtccaagctcttcaccgaagagaaaacaagggtcacacaaactccaattgggacagtcggatacctgccgccagaatacatagagaagaatgtactctcaaacaagctagacatattcagcttgggtgttgtaatgctaaacgtaattgcaggacctagagggcgctctagaagtgctgaaatgtcttcccaagaatttactgatctagtactaggaaattggacagtcaggttacaagcaacatggaatggttcctcattggaagcatatcgccaacaggtgaagacgtgcactgaaatagctctgaaatgtgtggagattgatagacacaaaagacccaatattttagatatcgtcaataagattaatgagacagaaactatgattggcaagatcattccaatggaaaatcctgacattcccatagatgcccatcccactgagccatggattttgacaggcaatatttttggctcagttgacatcctgaactgtgatacacaaaaccaccttctcttaatcttaaaaattagtggtaacattgtaaagtttgcctatgcgagtgaaattcattctagcgcagccaagttgattgcgcagaagcaatggcttgtggttggatatcatgatggtttcataagagtgtacacatacgaatcccctgtacagcaagtgaagagattcaaagctcattcatggaacatcacctgtttggacgttcatccaactgagccttatgtgctgtcggtcggcttgcttgacccaattaagatgtgggactggaacaagggctgggagtgcattaggatgtttgacatgcaaggtgtcctagcacatggaatcaaatttaaccctcacgattcatacaaatttgcggctgcttccatgatgaatgtacaggtttggaatttccgttcttcccgtcgtgaattcacattgtttgggcatggatctgcagtgagctgtttcgattacttcactcgtggaaatcagcaatacataataactggttctttggacaaaacggctaggatctgggactgcaagagcaggacttgtgttcaaatactcatagggcatatggattgtgttacctgtgtttgttcccatccagacctgccaatcctacttacaggttctaatgatgagacagttcgtctgtggaactcaattaccttcaagcttgagggtgtactggactttgaacttggaaaagtcggcgctatagtttgtttgaagggttcaaaacgggttgtgataggtcatcaggctggactagtaattactgaaattcgtaatgaacaacctggtctcagcaacaggtaa
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| Protein seq | MASPDFPVRPGGGEAAAEGEGERMAVARLAARTHKPGHRHQAPDSTMDPTDITFRLLEEITDGFSEERKIGQGAYGTVYKGEFRNGKEIAVKMLHNDTLGFDDKQFENEFQNLMRLEHPNIVRLVAYCYETQHKYAEYKGRIVFAAIIHRALCFEYLTGGSLENHLSDEFHGLDWPTRFKIIKGTCEGLKYLHEGLKPPIYHLDLKPGNILLDKNMVPKLADFGLSKLFTEEKTRVTQTPIGTVGYLPPEYIEKNVLSNKLDIFSLGVVMLNVIAGPRGRSRSAEMSSQEFTDLVLGNWTVRLQATWNGSSLEAYRQQVKTCTEIALKCVEIDRHKRPNILDIVNKINETETMIGKIIPMENPDIPIDAHPTEPWILTGNIFGSVDILNCDTQNHLLLILKISGNIVKFAYASEIHSSAAKLIAQKQWLVVGYHDGFIRVYTYESPVQQVKRFKAHSWNITCLDVHPTEPYVLSVGLLDPIKMWDWNKGWECIRMFDMQGVLAHGIKFNPHDSYKFAAASMMNVQVWNFRSSRREFTLFGHGSAVSCFDYFTRGNQQYIITGSLDKTARIWDCKSRTCVQILIGHMDCVTCVCSHPDLPILLTGSNDETVRLWNSITFKLEGVLDFELGKVGAIVCLKGSKRVVIGHQAGLVITEIRNEQPGLSNR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.923094 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0212300 | RBH | 0.000000 | 1.145010 | 1.281111 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10640 | RBH | 0.606671 | 0.387054 | 0.158629 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0212300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007120 | RBH | 0.000000 | 0.000000 | 0.578656 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007010 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007030 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007030 | RBH | 0.000000 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0096900 | RBH | 0.003888 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007020 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0100000 | RBH | 0 | 0.0704805 | 0.0037615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007050 | RBH | 0.0 | 2.871059 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007140 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007190 | RBH | 0.0 | 1.507863 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007040 | RBH | 0.0 | 0.0 | 0.0 |
