Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0001490 | OGI:11003570 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:972411-977218 | ||||||||
| Gene Symbol | RLCK309, OsRLCK309 | ||||||||||
| DNA seq | gacagacaacgtttcagtagcatagcaaccatcgttgcactcttagttcagcctttcatttctggggttaaaccttgccggttttggcagggcaaaacacagtcaacaacacataagaccactgaaaattagagggccttacaagcaccaccatgcagagcaaatttacaggttgaaaactgggggagaaagccAaaaaaaaaaaagaaaaaagataaaacccaaaagcacacagcgcaggtgtgcacactcacgcaccatcaacggtttagacttgcaatgtacaactgaacctattccaggagcaactgaaacagcacactctcatctcaccctgcatgctgggacagcaggggagcacttggggttcggaagcgccctacagtggactctgttcgtcattagtctgcggtttactctgtagctcggaaggccactgccaagaacagattgaacagctccatcacttccaccactgccctgcaatggttcaagagtctcaacgacgtcgctcataagaggcctcgcctttgggttttggctcaagcagtagtatgctaggctgcaggctttgtgggcagctctaactgaatactgtccctccagttttgggtcaatgatttggagaagcctcctcttgtcgttcagcttcgggagggcccagtcaaccaagctatgctccctgctgggccgtgacttgtcgatggacttacgcccagtcaagagttcaagaaggacaacaccaaagctgtagacatcacttctagcagtcaagtgacctgcccaataggtatatatacatcagatgaaattgcaagggcaaaacagaaactgcatacttgcatatcacttagtaaactttctggtcacattttgatgaagggtaataacgctattcagAAaaaaaaaatgaagaaaacttaaaaaagataaaatgaggagagtaccagtcatcacatattcaggggcagcataaccatatgttcccatcacccgagttgatacatgggtttgatcgccttctgggccagcttttgccagaccaaagtcagagagtttagcagtataatcctgtgtaagtgcaaataaaagataaatgctattatgaaaaatatttacatattcccaacagatgcatagaagagaaaggAaaaaaaacaagatattggcaagaaatgctactcaactgagtccagcagaatatttgatgtcttgaaatccctgtagataattggcctttcagcattgtggaggcaagctaaccctttggcagctcctaatgcaatcgacatcctagtagcccacgatagtggagtagctgtccctgagaagaaaaatgaaaagcacagacaatgtcaggaaatttcctactctcgaatacaatttcaccacaatgtacaagAaaaaaaatatagttgagcataatctttagtcagcctaatattcagtgttgggcctatttggcatataatttacttaacctacaaatgaattgatgaaataccgtgccaacatttcaaatcatacatgccagtattcaatagtattcatatattttggaagaaaaaatacagaagatatttagcagataagtatgggtagctcgcatactctatgcatggtagttaactatcacgaatgattctattaagtataccaacaaagaaaatcattcagatggttaactggacactttgggcaatcttgttaaaaacacgtcaataaggttttccaagaatgataaatatgaagagggcctaaacttactgagggtctagcagcgaacagttaaatcggttgttcagtcaaaaagctctggacaatttggaatccttgtgaacagcaagtcgaaatgaaatcctaccataccaggttctagagcgctgatcatttgctcatatcaacgatatttaatagaacaacgttgcaactctattatccacaatatggtcaacttcagctatggtgcttgattgcattatagagagaaacatatatatttaaaaagtgtgatcacagaaactattcagccatgatatcattcatgaagtgatgaaaaggagttggattcttacttcggaataagtggttttctagacttcctcgaaacatgaactcgtacacaagcagcctgtggtcatcttcgcagcaatacccaatcaacttgactaaatttggatgtcttagctgcccaaggaacctaacctcagtctgacaaagaaacaaaagatgagttacttcttgataattcttctaacataacgacaagaatgaaaaggtaatgaatttccaagttaataatatgcccgaaaactgccaaaattgcttagtcaaattcaatatatcatgtttcgtttatggacatgttgcttattctcctttaaaaaagaaatagaatttcacctattccgagcatgtgtagatacactgttctatttgtagcatgtgtagatacactgttctgtttgtaaacattcaagaaatatgctatttaacagtatgactcagtctacatgcattcggccaatgaaattaatactttagccttcatcaacctatcaagtgtgcacatttttcttcatgatacaagcccaatgaatcattctaactatgacttgtagcttcttgagaaattttctattccaaaaagggaacaaactaagaaacatgaaagcagaattttgcatggtatatttatttgctagcgtacttgttaacttgagtataactaaatgctgcatgtgccattgttgatttgttgtgaaatacatagttagcatcaacaaatatttttccataatttacataattaagatatatcatgttcttgtacgagtaattgttaatgttccgcgtatccatgtacataacggacatcagcaaccatagtgaatattgaacaagttggcaactcacaagccattctctgtgtccttgatgtccatctttgttgagcaccttgactgcaacaggtagtgacttcagaccaaccctgacattctcatctatgtagcccttgtaaacagtcccaaaccctccttcaccaagaacgtagtcagcacggaagctccttgtgatagtctcgagttcaaacaatgtgaagtcaatcacatcattgtatatggagatgttcttggcatcttcaattttcctaggtgttgaaggatcactcatatctgatgagatgcgggtgtgcttcctctctgcaacagcattcttgacaggatgttgtaacaaatggagctgctgaactgagaagatgacatttcaacaataagaaagaaaaaatagttaaggtataaacgaattaaggttaccagaaattctcgtacaaacaaaataaaaggcaagctttttttttcatattgaattttcagcattcacagagatggatggatgaaagagagctaatcctgctgaaatacgtttagggaagctataatcacaaactaacaagagaactactggaaacgagcgttggcgattcctagcaattataatatggtattctacctaaaaatactgtaaaaaagtacatacatgggcaagttgattacagaaagaggtaaacaggaccaggagaccagatctactgcagagttgcatgcaataaaaaaagggctccaaattgcttaaacaatgcagcaaactgcaagaagtgattatgtttttccaacttgcaggatcataactctattttctgttaaactgaaagtcaacagtgcctcagtgaagcagagagcacagaaattgcagcactattgggggaagtgcctgtaaattgtcccgatgaacataatgaagcagaatttctgatacagcaaccaagaagataaggatatgcagcagagaagaaatcacagagcaaccacaccagaaagattaaggggatgagggcttccccgcaaaaaaaggaaaaaaaaagatgttgagcaaatgtagactgtaaaccaaaatcccagaatccccatatgcaacaaACagaaaaacaatgttgaacattcatatgcaacaaacagaaaaacaatgttgaagatttggagcaaatgttgatatcagattttaatcaaacctaaaccggagagtaccaaaatgccgatttggaatagccctaacaagaatgaacatttgcaaccaaaacacccatccaaaggtcccaataacataagtcatcatatatagcaaaaaggaaagacagtgcttttgtcaattccccactgaacccaccaacctagagtcctagagatcaggggaacccagaaataaccaccaagatcaattttttttgatgaaattcagatcatccaacccgagatcccatcccaacaaccagcatcccaagaaaacaatcaccgggaaatCccccaagaaatcaaatccgaggaagcgaagaataccttgggcgtgcgccgcaacgacggcattctcctctcgcgtcccgcagttgcccatctatctacttctcctcctgatgttcttgatggtggtgggtctgtctctatctcttgtagtggaggcccaagctctcattcttgggcgggggcggggtgggggcaggcgatgcctatgccatgcgccgccggtagaggcgatgctgcgtgctcttcatcctccagtggcctgtgggggggcagcggaaacgaagcttgctttggtttggtttggtgttggtttgctttgctgtgtgcgcgtggaagtgggatggacggtggtgggagagcgagaggggggcagcaaccgttaactggaggaggaagagaagaaaaggctgtgctggtgtgcgtgagattgacagacagagacagaga
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| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgttgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaatgatgtgattgacttcacattgtttgaactcgagactatcacaaggagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcgtgggctactaggatgtcgattgcattaggagctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgacatttatcttttatttgcacttacacaggattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaactcgggtgatgggaacatatggttatgctgcccctgaatatgtgatgactggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagcagggagcatagcttggttgactgggccctcccgaagctgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaatgacgaacagagtccactgtagggcgcttccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITRSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSIALGAAKGLACLHNAERPIIYRDFKTSNILLDSVDIYLLFALTQDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLMTNRVHCRALPNPKCSPAVPACRVR |
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| Function | Probable serine/threonine-protein kinase PBL8 [UniProtKB/Swiss-Prot:Q8GXZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0001490 | OsKeNa_11g0001490.03 | Chr11 | 972427 | 977145 | - | NAM | ||
| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgttgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaatgatgtgattgacttcacattgtttgaactcgagactatcacaaggagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcgtgggctactaggatgtcgattgcattaggagctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgacatttatcttttatttgcacttacacaggattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaactcgggtgatgggaacatatggttatgctgcccctgaatatgtgatgactggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagcagggagcatagcttggttgactgggccctcccgaagctgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaatgacgaacagagtccactgtagggcgcttccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITRSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSIALGAAKGLACLHNAERPIIYRDFKTSNILLDSVDIYLLFALTQDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLMTNRVHCRALPNPKCSPAVPACRVR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0001490 | OsKeNa_11g0001490.01 | Chr11 | 972426 | 977218 | - | NAM | ||
| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgttgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaatgatgtgattgacttcacattgtttgaactcgagactatcacaaggagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcgtgggctactaggatgtcgattgcattaggagctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaactcgggtgatgggaacatatggttatgctgcccctgaatatgtgatgactggtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagcagggagcatagcttggttgactgggccctcccgaagctgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaatgacgaacagagtccactgtagggcgcttccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITRSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSIALGAAKGLACLHNAERPIIYRDFKTSNILLDSDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLMTNRVHCRALPNPKCSPAVPACRVR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0001490 | OsKeNa_11g0001490.02 | Chr11 | 972427 | 977145 | - | NAM | ||
| CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgttgcggcgcacgcccaagttcagcagctccatttgttacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagatgccaagaacatctccatatacaatgatgtgattgacttcacattgtttgaactcgagactatcacaaggagcttccgtgctgactacgttcttggtgaaggagggtttgggactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagagaatggcttactgaggttaggttccttgggcagctaagacatccaaatttagtcaagttgattgggtattgctgcgaagatgaccacaggctgcttgtgtacgagttcatgtttcgaggaagtctagaaaaccacttattccgaaggacagctactccactatcgtgggctactaggatgtcgattgcattaggagctgccaaagggttagcttgcctccacaatgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagattatactgctaaactctctgactttggtctggcaaaagctggcccagaaggcgatcaaacccatgtatcaactcgggtgatgggaacatatggttatgctgcccctgaatatgtgatgactggtactctcctcattttatcttttttaagtcacttgactgctagaagtgatgtctacagctttggtgttgtccttcttgaactcttgactgggcgtaagtccatcgacaagtcacggcccagcagggagcatagcttggttgactgggccctcccgaagctgaacgacaagaggaggcttctccaaatcattgacccaaaactggagggacagtattcagttagagctgcccacaaagcctgcagcctagcatactactgcttgagccaaaacccaaaggcgaggcctcttatgagcgacgtcgttgagactcttgaaccattgcagggcagtggtggaagtgatggagctgttcaatctgttcttggcagtggccttccgagctacagagtaaaccgcagactaatgacgaacagagtccactgtagggcgcttccgaaccccaagtgctcccctgctgtcccagcatgcagggtgagatga
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| Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEDAKNISIYNDVIDFTLFELETITRSFRADYVLGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRTATPLSWATRMSIALGAAKGLACLHNAERPIIYRDFKTSNILLDSDYTAKLSDFGLAKAGPEGDQTHVSTRVMGTYGYAAPEYVMTGTLLILSFLSHLTARSDVYSFGVVLLELLTGRKSIDKSRPSREHSLVDWALPKLNDKRRLLQIIDPKLEGQYSVRAAHKACSLAYYCLSQNPKARPLMSDVVETLEPLQGSGGSDGAVQSVLGSGLPSYRVNRRLMTNRVHCRALPNPKCSPAVPACRVR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0001490 | OsKeNa_11g0001490.04 | Chr11 | 972411 | 977079 | - | IsoSeq | ||
| CDS seq | atgctgaaaggccaattatctacagggatttcaagacatcaaatattctgctggactcagttgagtagcatttcttgccaatatcttgtttttttTcctttctcttctatgcatctgttgggaatatgtaaatatttt |
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| Protein seq | MLKGQLSTGISRHQIFCWTQLSSISCQYLVFFPFSSMHLLGICKYF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 973358 | 973734 | - | OsKeNa_11g0001490.04 | OsKeNa_11g0001490.01,OsKeNa_11g0001490.04 | All |
| RI | Chr11 | 973358 | 973734 | - | OsKeNa_11g0001490.04 | OsKeNa_11g0001490.03,OsKeNa_11g0001490.04 | All |
| A5 | Chr11 | 973189 | 973358 | - | OsKeNa_11g0001490.02 | OsKeNa_11g0001490.02,OsKeNa_11g0001490.01,OsKeNa_11g0001490.03,OsKeNa_11g0001490.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.322550 | 2.085778 | 2.595308 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0121400 | RBH | 0.199570 | 0.611730 | 7.203998 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02830 | RBH | 0.128576 | 0.391980 | 1.721680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0121400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001450 | RBH | 0.096556 | 10.253325 | 14.961062 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001550 | RBH | 0.281947 | 4.379057 | 2.572294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001470 | RBH | 0.437101 | 10.432280 | 14.313154 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001460 | RBH | 0.000000 | 0.539744 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001450 | RBH | 3.108166 | 23.404846 | 21.478722 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0018600 | RBH | 15.4389695 | 10.3462175 | 37.951424 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001440 | RBH | 0.148134 | 1.217515 | 1.372021 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0020200 | RBH | 7.8413375 | 1.8862965 | 33.15073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001320 | RBH | 0.164591 | 0.171412 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001460 | RBH | 0.187752 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001450 | RBH | 0.000000 | 45.781345 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001430 | RBH | 0.082032 | 0.0 | 2.948549 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001490 | RBH | 0.0 | 10.407032 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001440 | RBH | 0.0 | 7.446180 | 5.139292 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001430 | RBH | 0.0 | 22.798973 | 8.694711 |
