Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0001010 | OGI:11002340 | 8/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:648381-652635 | ||||||||
| Gene Symbol | OsRTPP1, RTPP1, - | ||||||||||
| DNA seq | tcagataacccattcgatttcatagtcccaaaagttgtagtacatggacttgtgcttgatcatccggacaccaccttgatcatcaccatctttaccacaaggtccaaccatctgtaggccagttaagacagcgaatttcccctgaatcgggtcagagtccattgtgtcatcgtcatcgtaatcggagaaacccaatgtgcagtcacctgcaatagaacggaaaatcttgacgacgcaaaacctgccacagcccaggttgatgaggtcaatgttatagggcaaccaggattcaggtatgtcgaGgtccacccaagtgtgctgctgctgcaccgtgggtggctttgctgcatcggagaggagatcacaagcgcataagctgtaggggtggtcgacggatagtccgaaccacagcttgagctccggcacatactcagctttgccatcgaatggcattgtccagcagcccaggcgacgccactgacgccccactgtgtcaaaggcataagtagcatctggctccatggaagaaacatagatagtggagctgtcaaccaccgtgtaggaagtaatgtcggcatgcatgtagttggcaaagggcggcggctgtagagaactccaacagggagtcctcccacggaaatccttacaagaagaagtgtagttgagcacttcaaagcagtaatccttggtttcagggtcaacactctgggacatcacgtagaggctgtcttcatcccacatgtcgccactaatgttcttgttggagttgttgtttttgatggagagggaaatggctgcacaacccttgtcagaaatgaggttgggaaaggcaaaacggtggaggagtcggcgtcaaagacgatggtatgtccactgtggtcggcaatgaggatcctgttctcattgccgaggagagaggcgaactcgagattcctatgtcgacgctggccatcccagggggttggttcgaagttgaacatgggagagggaagcttccccaacatctccaaggtgtggaggcctggatgtttcctgccatggtgctccttaacgtacgcgttgaatgattcttgggactttgccgtggcctcttcagctgctcttgttgatgggtagaagagatgatttgcaggtatgcggcgcagagaatacagtccactgcgggcgttctccaccacaaggtttagaaatcgcctccccatatctttttccgaaccaaaactgatcttcttatctgacgggatgattctattgttgggtgggagtgcctatataacagttgccacaatttcagcctaaaaacagttagtttttcaccattacagatcaacggccaggacaaaacaaaagctcattactgatgaaacaatttgacactaaacttatagcataagtactagctgcatagctaaaaaccaaagctagaaggcaaggtctgtgcaaaaatagataaaaatataaatttacatgcacatagaactaaacctacatttttaaatacggtgtaactgtaatgtaagtgacatgtaattgtagttcaaatgtgatgtgagtaccttttaaccttaactttatcatacactacattgaccgaagAaaaataccagctaagagcagttggtaactcggcattcaaaacgggcttgcatgcttgcaatagaacgaatctgagaatcgatatgatgttgataaatcttactataatcagccaagaattgtggagacacaattttagtaattccgtaaaggaataaaagaaacaaaatacgacgaacgaccagacggaccaatagaacgaaacagcaatggatggagcaaaataaacccatacctgcagcagcagcagcaaaggatgtggatttcctttcaattccttgcaatctgtgacagtcggccgggatgcagatcagatggaagctgctgatctacaggggcagcgtgcaatctacaggaaggaaggaggagggttggacaagtcaggaaggatggcggcggctgccgaggctcagcctcagcgcgatggcacggattaGggccgtctGggtcctgcTAGtcgcgatttctttatttttatattatttttttaaaaaataaaaattaaattacccttattaatcgccataccatacaaggggaagtgcgagacgtggcaaatgacggaagggGCgcgcgtcGTgtggcaattttgtaggcgccccttctcactcttccgtagaacgatttattactggggcactttcaaATatccgtggtcaccccacttgttattttttttaagataaaccattgcaacagtagattgtcctaataaatggtgatttatcatgcctttttggaggcagcaccctgcccgtaaaatttcaataacacgcctcttcggtcgtcctccatgtcacatttctcgtcctaacataggatgatttatatgtcctatcctatggtaggacataaggagtacatttctacaaaacttcagaacggcagtttagttttgtaaaccttttaaataaacaaatacaaaagaaaatcgtggcttttagggattgctccaactgcctttggcccatggacccacAaactttttacttgagtggtatggtactatatttttttaaggaaaaaaaatacaatagagatccctcatcttgtcacattacaaaatcatccttgaaccgcaaaaccggacataacgcatccccaaacttataaaccagtgcaaaggaagtcctctggcggtattgtccctggttttgattgatgtggtgcctacatgcctcctttaactaggtcttcgtctcatgtgacattgatatgacgcttattaggtactaataatttagaaatgttaattacttagataccactagtaacttagaagagtctcttacaatcaatcctactaattattccaatcaaattaagtagagtctctgatagacaactaggtagctagaaacatggacatatgtataggagattaaagctagcattgcttcaaataccaaagtgaaattagggcacatatgctagctgcttgatagcaaaataaccatcagcttcagataacccattcgatgtaatcatcgaaaaattggtagtacatgaacttgtgcttgatcatctggacatcatcatgtttaccacgagggcgaaccatgtgaaggccagtgaagatagcgaaactcccatgaattgggtcagagtcttcaattgtgccatcgtcactctcagagtaggaacaaaatgtgccatcacccgaaatagaatggaacatcttggcgatgcaaaacctgccacagccaaggttgatgagattaatgttccatggcaaccaggactgaggtatgacaaggtccacccaagtatgctgcaccgtgggtggttttgctgcgacggatgagtcgtcggagggaagatcaaaagcacataagctgtagggatggtcagcagacaggccaaaccagaggttgagctctggcacatactcagctctgccatggaatggcattgtccaggagcccagccggcgccactcacggctaaccgtgtcgaaggcgtaagtagaatggattggcttattgcaagaaatgtagatggtggtgccgtgaaccaccgtgtaggaggtaatttcggcgttcatgcagccggcgaagggcggtggtggcagagaaacccaatgaggggtcatctcacggaaatcggcagaggaagaagagtagttgagcacctcaaagcaaccatccttgattctgtggacgtcgggactccgggtcatcacgtagaggccgtcctccggcggtggttccaacccgttgttgttgttgctgccatcgttgttgataatggagagggatatggcgttatacctcttgggagaaatgaggttggggaaggcgaggacggaggaggagtcggcgtcgaagacgacggtgtttcccctgttgtctgcagtgagcatcctgctctcgtggccgaggagacaggcgaagtcgagagacctaagatggtagcgatccacGggggccggctcgaaggcgaacgtcgaacggggaagcttctccaacatctccatggtgtggaggcctggatgcttcctgccaccgtgctcctccatgaatgattcttgtgactttgccgttgcttcttcagctgctcttgttgatgggtagaagagacgattcgcgggtatgcggcgcagagaatagagtccaccggcgccctgcaccaccaggttcacaaatcgtcgtcgtcccat
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| CDS seq | atgggacgacgacgatttgtgaacctggtggtgcagggcgccggtggactctattctctgcgccgcatacccgcgaatcgtctcttctacccatcaacaagagcagctgaagaagcaacggcaaagtcacaagaatcattcatggaggagcacggtggcaggaagcatccaggcctccacaccatggagatgttggagaagcttccccgttcgacgttcgccttcgagccggccccCgtggatcgctaccatcttaggtctctcgacttcgcctgtctcctcggccacgagagcaggatgctcactgcagacaacaggggaaacaccgtcgtcttcgacgccgactcctcctccgtcctcgccttccccaacctcatttctcccaagaggtataacgccatatccctctccattatcaacaacgatggcagcaacaacaacaacgggttggaaccaccgccggaggacggcctctacgtgatgacccggagtcccgacgtccacagaatcaaggatggttgctttgaggtgctcaactactcttcttcctctgccgatttccgtgagatgacccctcattgggtttctctgccaccaccgcccttcgccggctgcatgaacgccgaaattacctcctacacggtggttcacggcaccaccatctacatttcttgcaataagccaatccattctacttacgccttcgacacggttagccgtgagtggcgccggctgggctcctggacaatgccattccatggcagagctgagtatgtgccagagctcaacctctggtttggcctgtctgctgaccatccctacagcttatgtgcttttgatcttccctccgacgactcatccgtcgcagcaaaaccacccacggtgcagcatacttgggtggaccttgtcatacctcagtcctggttgccatggaacattaatctcatcaaccttggctgtggcaggttttgcatcgccaagatgttccattctatttcgggtgatggcacattttgttcctactctgagagtgacgatggcacaattgaagactctgacccaattcatgggagtttcgctatcttcactggccttcacatggttcgccctcgtggtaaacatgatgatgtccagatgatcaagcacaagttcatgcgatttctaaaccttgtggtggagaacgcccgcagtggactgtattctctgcgccgcatacctgcaaatcatctcttctacccatcaacaagagcagctgaagaggccacggcaaagtcccaagaatcattcaacgcgtacgttaaggagcaccatggcaggaaacatccaggcctccacaccttggagatgttggggaagcttccctctcccatgttcaacttcgaaccaaccccctgggatggccagcgtcgacataggaatctcgagttcgcctctctcctcggcaatgagaacaggatcctcattgccgaccacagtggacataccatcgtctttgacgccgactcctccaccggttgtgcagccatttccctctccatcaaaaacaacaactccaacaagaacattagtggcgacatgtgggatgaagacagcctctacgtgatgtcccagagtgttgaccctgaaaccaaggattactgctttgaagtgctcaactacacttcttcttgtaaggatttccgtgggaggactccctgttggagttctctacagccgccgccctttgccaactacatgcatgccgacattacttcctacacggtggttgacagctccactatctatgtttcttccatggagccagatgctacttatgcctttgacacagtggggcgtcagtggcgtcgcctgggctgctggacaatgccattcgatggcaaagctgagtatgtgccggagctcaagctgtggttcggactatccgtcgaccacccctacagcttatgcgcttgtgatctcctctccgatgcagcaaagccacccacggtgcagcagcagcacacttgggtggacCtcgacatacctgaatcctggttgccctataacattgacctcatcaacctgggctgtggcaggttttgcgtcgtcaagattttccgttctattgcaggtgactgcacattgggtttctccgattacgatgacgatgacacaatggactctgacccgattcaggggaaattcgctgtcttaactggcctacagatggttggaccttgtggtaaagatggtgatgatcaaggtggtgtccggatgatcaagcacaagtccatgtactacaacttttgggactatgaaatcgaatgggttatctga
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| Protein seq | MGRRRFVNLVVQGAGGLYSLRRIPANRLFYPSTRAAEEATAKSQESFMEEHGGRKHPGLHTMEMLEKLPRSTFAFEPAPVDRYHLRSLDFACLLGHESRMLTADNRGNTVVFDADSSSVLAFPNLISPKRYNAISLSIINNDGSNNNNGLEPPPEDGLYVMTRSPDVHRIKDGCFEVLNYSSSSADFREMTPHWVSLPPPPFAGCMNAEITSYTVVHGTTIYISCNKPIHSTYAFDTVSREWRRLGSWTMPFHGRAEYVPELNLWFGLSADHPYSLCAFDLPSDDSSVAAKPPTVQHTWVDLVIPQSWLPWNINLINLGCGRFCIAKMFHSISGDGTFCSYSESDDGTIEDSDPIHGSFAIFTGLHMVRPRGKHDDVQMIKHKFMRFLNLVVENARSGLYSLRRIPANHLFYPSTRAAEEATAKSQESFNAYVKEHHGRKHPGLHTLEMLGKLPSPMFNFEPTPWDGQRRHRNLEFASLLGNENRILIADHSGHTIVFDADSSTGCAAISLSIKNNNSNKNISGDMWDEDSLYVMSQSVDPETKDYCFEVLNYTSSCKDFRGRTPCWSSLQPPPFANYMHADITSYTVVDSSTIYVSSMEPDATYAFDTVGRQWRRLGCWTMPFDGKAEYVPELKLWFGLSVDHPYSLCACDLLSDAAKPPTVQQQHTWVDLDIPESWLPYNIDLINLGCGRFCVVKIFRSIAGDCTLGFSDYDDDDTMDSDPIQGKFAVLTGLQMVGPCGKDGDDQGGVRMIKHKSMYYNFWDYEIEWVI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0001010 | OsKeNa_11g0001010.01 | Chr11 | 648381 | 652635 | - | NAM | ||
| CDS seq | atgggacgacgacgatttgtgaacctggtggtgcagggcgccggtggactctattctctgcgccgcatacccgcgaatcgtctcttctacccatcaacaagagcagctgaagaagcaacggcaaagtcacaagaatcattcatggaggagcacggtggcaggaagcatccaggcctccacaccatggagatgttggagaagcttccccgttcgacgttcgccttcgagccggccccCgtggatcgctaccatcttaggtctctcgacttcgcctgtctcctcggccacgagagcaggatgctcactgcagacaacaggggaaacaccgtcgtcttcgacgccgactcctcctccgtcctcgccttccccaacctcatttctcccaagaggtataacgccatatccctctccattatcaacaacgatggcagcaacaacaacaacgggttggaaccaccgccggaggacggcctctacgtgatgacccggagtcccgacgtccacagaatcaaggatggttgctttgaggtgctcaactactcttcttcctctgccgatttccgtgagatgacccctcattgggtttctctgccaccaccgcccttcgccggctgcatgaacgccgaaattacctcctacacggtggttcacggcaccaccatctacatttcttgcaataagccaatccattctacttacgccttcgacacggttagccgtgagtggcgccggctgggctcctggacaatgccattccatggcagagctgagtatgtgccagagctcaacctctggtttggcctgtctgctgaccatccctacagcttatgtgcttttgatcttccctccgacgactcatccgtcgcagcaaaaccacccacggtgcagcatacttgggtggaccttgtcatacctcagtcctggttgccatggaacattaatctcatcaaccttggctgtggcaggttttgcatcgccaagatgttccattctatttcgggtgatggcacattttgttcctactctgagagtgacgatggcacaattgaagactctgacccaattcatgggagtttcgctatcttcactggccttcacatggttcgccctcgtggtaaacatgatgatgtccagatgatcaagcacaagttcatgcgatttctaaaccttgtggtggagaacgcccgcagtggactgtattctctgcgccgcatacctgcaaatcatctcttctacccatcaacaagagcagctgaagaggccacggcaaagtcccaagaatcattcaacgcgtacgttaaggagcaccatggcaggaaacatccaggcctccacaccttggagatgttggggaagcttccctctcccatgttcaacttcgaaccaaccccctgggatggccagcgtcgacataggaatctcgagttcgcctctctcctcggcaatgagaacaggatcctcattgccgaccacagtggacataccatcgtctttgacgccgactcctccaccggttgtgcagccatttccctctccatcaaaaacaacaactccaacaagaacattagtggcgacatgtgggatgaagacagcctctacgtgatgtcccagagtgttgaccctgaaaccaaggattactgctttgaagtgctcaactacacttcttcttgtaaggatttccgtgggaggactccctgttggagttctctacagccgccgccctttgccaactacatgcatgccgacattacttcctacacggtggttgacagctccactatctatgtttcttccatggagccagatgctacttatgcctttgacacagtggggcgtcagtggcgtcgcctgggctgctggacaatgccattcgatggcaaagctgagtatgtgccggagctcaagctgtggttcggactatccgtcgaccacccctacagcttatgcgcttgtgatctcctctccgatgcagcaaagccacccacggtgcagcagcagcacacttgggtggacCtcgacatacctgaatcctggttgccctataacattgacctcatcaacctgggctgtggcaggttttgcgtcgtcaagattttccgttctattgcaggtgactgcacattgggtttctccgattacgatgacgatgacacaatggactctgacccgattcaggggaaattcgctgtcttaactggcctacagatggttggaccttgtggtaaagatggtgatgatcaaggtggtgtccggatgatcaagcacaagtccatgtactacaacttttgggactatgaaatcgaatgggttatctga
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| Protein seq | MGRRRFVNLVVQGAGGLYSLRRIPANRLFYPSTRAAEEATAKSQESFMEEHGGRKHPGLHTMEMLEKLPRSTFAFEPAPVDRYHLRSLDFACLLGHESRMLTADNRGNTVVFDADSSSVLAFPNLISPKRYNAISLSIINNDGSNNNNGLEPPPEDGLYVMTRSPDVHRIKDGCFEVLNYSSSSADFREMTPHWVSLPPPPFAGCMNAEITSYTVVHGTTIYISCNKPIHSTYAFDTVSREWRRLGSWTMPFHGRAEYVPELNLWFGLSADHPYSLCAFDLPSDDSSVAAKPPTVQHTWVDLVIPQSWLPWNINLINLGCGRFCIAKMFHSISGDGTFCSYSESDDGTIEDSDPIHGSFAIFTGLHMVRPRGKHDDVQMIKHKFMRFLNLVVENARSGLYSLRRIPANHLFYPSTRAAEEATAKSQESFNAYVKEHHGRKHPGLHTLEMLGKLPSPMFNFEPTPWDGQRRHRNLEFASLLGNENRILIADHSGHTIVFDADSSTGCAAISLSIKNNNSNKNISGDMWDEDSLYVMSQSVDPETKDYCFEVLNYTSSCKDFRGRTPCWSSLQPPPFANYMHADITSYTVVDSSTIYVSSMEPDATYAFDTVGRQWRRLGCWTMPFDGKAEYVPELKLWFGLSVDHPYSLCACDLLSDAAKPPTVQQQHTWVDLDIPESWLPYNIDLINLGCGRFCVVKIFRSIAGDCTLGFSDYDDDDTMDSDPIQGKFAVLTGLQMVGPCGKDGDDQGGVRMIKHKSMYYNFWDYEIEWVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0109600 | SBH | 0.549033 | 2.037041 | 1.097040 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02220 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000960 | RBH | 0.0 | 0.0 | 0.247912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001030 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000960 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000960 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0012500 | RBH | 0 | 0.008526 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0013800 | RBH | 0 | 0 | 0.0099655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000840 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000960 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000990 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000970 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000950 | RBH | 0.0 | 0.0 | 0.0 |
