Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0000650 | OGI:11001480 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:427023-428584 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taatttgttcttattgatcttcgttcatttctttcaaaatccgttcgagcctgctcaggatgtagttgttgattgccgggcattgtattccttgccttttaaccgatccttgcaggtgattctggagtttggtcacattgaaccccttaactctcttgtggcacgctaagcagcggccgtcatcttttccaagcctctccccaagctcccagaccctgcttacttggtgacctctaacctttcccccaatttgtggcctgcaaattcagtgtttactagtttataaatcgatcataagtgacaatgagaacActacactaattaattagtattaaacaatcaattgttgtgtgcgtgcagtactagtatattgcaataggcagaggagcatgttagttaattcaatgcaacaaattaagtttaattacctgtatgccGggaaataaagcttcaaatagtcatggatcgcatggcaggtgttctccatatgggtcgtagcttcatcttctcccctgcaacaacacagatcaattatcagcacaacacacacgtaatgcaattatattaattattatatatggaagattattaacaactgaaaagatcgagtgctagtagccaagtgacacttacaatggagtaTCtctctttgcattaacccaatCccggatttctttcaaaacaccaccgttgacaaaggcacttccggtatctcctgaataaatggactcaattttgtcatgataatagcgcattgcagcagcagtattgccagaacgcatcagccttagagcaCccgcaatggtaaagtaaggtgttatctataaaacatgtatatcttagcaatagactagattaatagtcatctcaatagtatatctacatgggtatctatatctctcatacattgcctcgtttttctctatagattatctctaagttagtagatagttttgttctctcttcatttaatatcttccatgtaagaaaatatgctgacatagatctcttgtagagagtctatagataaccattgtgggtgttcttaggtactcgcaaaataacgatctcgggatgagcaacataaatgtcttggggtggcgcgtcaggtacagggccattgatggcttcaccattacggaccatgcgcgtcagccgccgcagagctccctcccaacgatgttgttccaacaaattatccaaactcagcctgcaccatgtagtagaaaccaagaggttatatataaTTttgtggtgtgagctggtgcaacgtttagttgactagctagaatgtcaaatatatgaatgaatctgcttgcatgcaagtagtctcacttgtcatcctcatcttgatgtggctcaactggattttgctgatctgcagcggcttctggttgggctttcaccagttgctctaattcatcaagggcttcttgttctatcagctctgcaaccgcagcgtctatctcctgatgcacttgtatccctccgccaggcaattccaagatctcaggttgtttctcttctattatcaacctgcaaataattaagtaaaagagcat
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| CDS seq | atgctcttttacttaattatttgcaggttgataatagaagagaaacaacctgagatcttggaattgcctggcggagggatacaagtgcatcaggagatagacgctgcggttgcagagctgatagaacaagaagcccttgatgaattagagcaactggtgaaagcccaaccagaagccgctgcagatcagcaaaatccagttgagccacatcaagatgaggatgacaagctgagtttggataatttgttggaacaacatcgttgggagggagctctgcggcggctgacgcgcatggtccgtaatggagataccggaagtgcctttgtcaacggtggtgttttgaaagaaatccggGattgggttaatgcaaagagaGAtactccattgggagaagatgaagctacgacccatatggagaacacctgccatgcgatccatgactatttgaagctttatttccCggcatacaggccacaaattgggggaaaggttagaggtcaccaagtaagcagggtctgggagcttggggagaggcttggaaaagatgacggccgctgcttagcgtgccacaagagagttaaggggttcaatgtgaccaaactccagaatcacctgcaaggatcggttaaaaggcaaggaatacaatgcccggcaatcaacaactacatcctgagcaggctcgaacggattttgaaagaaatgaacgaagatcaataa
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| Protein seq | MLFYLIICRLIIEEKQPEILELPGGGIQVHQEIDAAVAELIEQEALDELEQLVKAQPEAAADQQNPVEPHQDEDDKLSLDNLLEQHRWEGALRRLTRMVRNGDTGSAFVNGGVLKEIRDWVNAKRDTPLGEDEATTHMENTCHAIHDYLKLYFPAYRPQIGGKVRGHQVSRVWELGERLGKDDGRCLACHKRVKGFNVTKLQNHLQGSVKRQGIQCPAINNYILSRLERILKEMNEDQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0000650 | OsKeNa_11g0000650.01 | Chr11 | 427023 | 428584 | - | NAM | ||
| CDS seq | atgctcttttacttaattatttgcaggttgataatagaagagaaacaacctgagatcttggaattgcctggcggagggatacaagtgcatcaggagatagacgctgcggttgcagagctgatagaacaagaagcccttgatgaattagagcaactggtgaaagcccaaccagaagccgctgcagatcagcaaaatccagttgagccacatcaagatgaggatgacaagctgagtttggataatttgttggaacaacatcgttgggagggagctctgcggcggctgacgcgcatggtccgtaatggagataccggaagtgcctttgtcaacggtggtgttttgaaagaaatccggGattgggttaatgcaaagagaGAtactccattgggagaagatgaagctacgacccatatggagaacacctgccatgcgatccatgactatttgaagctttatttccCggcatacaggccacaaattgggggaaaggttagaggtcaccaagtaagcagggtctgggagcttggggagaggcttggaaaagatgacggccgctgcttagcgtgccacaagagagttaaggggttcaatgtgaccaaactccagaatcacctgcaaggatcggttaaaaggcaaggaatacaatgcccggcaatcaacaactacatcctgagcaggctcgaacggattttgaaagaaatgaacgaagatcaataa
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| Protein seq | MLFYLIICRLIIEEKQPEILELPGGGIQVHQEIDAAVAELIEQEALDELEQLVKAQPEAAADQQNPVEPHQDEDDKLSLDNLLEQHRWEGALRRLTRMVRNGDTGSAFVNGGVLKEIRDWVNAKRDTPLGEDEATTHMENTCHAIHDYLKLYFPAYRPQIGGKVRGHQVSRVWELGERLGKDDGRCLACHKRVKGFNVTKLQNHLQGSVKRQGIQCPAINNYILSRLERILKEMNEDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000620 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000630 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000630 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0007800 | SBH | 7.4161405 | 6.0050445 | 6.1673355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000620 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0008700 | SBH | 7.0437075 | 2.0801915 | 10.838152 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000660 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000640 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000670 | SBH | 0.000000 | 0.000000 | 0.000000 |
