Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0018190 | OGI:04044140 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:23185550-23187514 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTTCTGCTTCACGAATATGATATTTTTTGGGCATTTCTAATAATAGCAAGCCTTATTCCTATTTTAGCATTTTGGATTTCAGCACTTTTAGCTCCGGTTCGTGAAGGACCAGAGAAGCTTTCTAGTTATGAATCGGGTATAGAACCCATGGgggggggcttggttacaattccgaatacgctattacatgtttgcgctagtttttgttgttttgatgtggaaacggtctttctctacccttgggcaatgagtttcgacgtattgggtatatccgtttttatcgaagctttcattttcgtgcttatcctagttgttggtttagtttatgcatggcgaaaaggagccttggaatggtcttaactgaatattcagacaaaaaaaaaaaaagaaggaaaagattccattaagacagttatgagtttgattgagtttcccctacttgaccaaacaagttccaattccgttatttcaactacactaaaagatctttcgaattggtcaagactctctagtttatggccccttctatatggtaccagttgttttcattgaatttgcttcattaataggctcacgattcgactttgatcgttatggattggtaccaagatcaagtcctaggcaagcggacctaattttaacagccggtacagtaacaatgaaaatggctccctctttagtgagattatatgagcaaatgcctgaaccaaaatacgtcattgctatgggagcttgtactattactggtggaatgttcagtacggattcctatagtactgttcggggagttgataagttaattcctgtggacgtctacttgccgggttgcccacctaaaccagaggctgttatagatgccctaacaaaacttcgtaagaagatatcgcgagaaatagttgaggatcgaactctatctcaaaagaaaaatcgatgttttactaccagccacaagctttatgttcggcgcagtactaatactggaacttatgagcaagaattgctctatcaatcaccatctactttagacatatcttctgaaacttttttcaaatccaaaagtccagtatcttcctacaaattagtgaattaggaggagctctttgtgccgaaaaagaaagagcagggcaatatttcaaacttgcattcgaactgcgaaatatttatacaaaggaggagagatcaagataatgcagcagggttggttatctaattggctagtcaaacatgaggtggttcatagatctttgggcttcgatcatcgaggaatagagactttgcaaataaaagcagaggattgggattccattgctgtcattttatatgtatatggttacaattatttacgttcccaatgtgcttatgacgttgcacccggtggatctttagctagcgtgtatcatcttacgagaatacagtatggtatagataacccagaagaagtatgcataaaagtctttgcccaaaaggataatcctagaatcccatctgtcttctggatttggagaagttccgattttcaagaacgcgaatcttttgatatggtgggaatctcttatgataatcatccacgccttaaacgtatcctaatgcctgaaagttggataggctggcccttacgtaaggactatataacccccaatttctatgaaatacaagatgctcattgaatgataagaaattcatgctcacttatacaacacaactccagattttatgcaagtcaaggaatatttttacgctctgttcctagatgaaacagaatacctattacattctaattaattccaattatacaaaaggttcagatagactaagcaaaaaagggcttcatttcgttggaaaatcacatattcatttccttcgtatgaacagaaaaatatgatgactcaaagaagttccctaccacgaactttgtaccgcgtgcattacttagaacaactaggaaagtaagataagataagc
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| CDS seq | ATGTTTCTGCTTCACGAATATGATATTTTTTGGGCATTTCTAATAATAGCAAGCCTTATTCCTATTTTAGCATTTTGGATTTCAGCACTTTTAGCTCCGGTTCGTGAAGGACCAGAGAAGCTTTCTAGTTATGAATCGGgctcacgattcgactttgatcgttatggattggtaccaagatcaagtcctaggcaagcggacctaattttaacagccggtacagtaacaatgaaaatggctccctctttagtgagattatatgagcaaatgcctgaaccaaaatacgtcattgctatgggagcttgtactattactggtggaatgttcagtacggattcctatagtactgttcggggagttgataagttaattcctgtggacgtctacttgccgggttgcccacctaaaccagaggctgttatagatgccctaacaaaacttcgtaagaagatatcgcgagaaatagttgaggatcgaactctatctcaaaagaaaaatcgatgttttactaccagccacaagctttatgttcggcgcagtactaatactggaacttatgagcaagaattgctctatcaatcaccatctactttagacatatcttctgaaacttttttcaaatccaaaagtccagtatcttcctacaaattagtgaattag
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| Protein seq | MFLLHEYDIFWAFLIIASLIPILAFWISALLAPVREGPEKLSSYESGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRTLSQKKNRCFTTSHKLYVRRSTNTGTYEQELLYQSPSTLDISSETFFKSKSPVSSYKLVN |
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| Function | NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [UniProtKB/Swiss-Prot:P0C343] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0018190 | OsKeNa_10g0018190.01 | Chr10 | 23185550 | 23186642 | + | NAM | ||
| CDS seq | ATGTTTCTGCTTCACGAATATGATATTTTTTGGGCATTTCTAATAATAGCAAGCCTTATTCCTATTTTAGCATTTTGGATTTCAGCACTTTTAGCTCCGGTTCGTGAAGGACCAGAGAAGCTTTCTAGTTATGAATCGGgctcacgattcgactttgatcgttatggattggtaccaagatcaagtcctaggcaagcggacctaattttaacagccggtacagtaacaatgaaaatggctccctctttagtgagattatatgagcaaatgcctgaaccaaaatacgtcattgctatgggagcttgtactattactggtggaatgttcagtacggattcctatagtactgttcggggagttgataagttaattcctgtggacgtctacttgccgggttgcccacctaaaccagaggctgttatagatgccctaacaaaacttcgtaagaagatatcgcgagaaatagttgaggatcgaactctatctcaaaagaaaaatcgatgttttactaccagccacaagctttatgttcggcgcagtactaatactggaacttatgagcaagaattgctctatcaatcaccatctactttagacatatcttctgaaacttttttcaaatccaaaagtccagtatcttcctacaaattagtgaattag
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| Protein seq | MFLLHEYDIFWAFLIIASLIPILAFWISALLAPVREGPEKLSSYESGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRTLSQKKNRCFTTSHKLYVRRSTNTGTYEQELLYQSPSTLDISSETFFKSKSPVSSYKLVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0018190 | OsKeNa_10g0018190.02 | Chr10 | 23186433 | 23187514 | + | IsoSeq | ||
| CDS seq | atgaaacagaatacctattacattctaattaattccaattatacaaaaggttcagatagactaagcaaaaaagggcttcatttcgttggaaaatcacatattcatttccttcgtatgaacagaaaa |
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| Protein seq | MKQNTYYILINSNYTKGSDRLSKKGLHFVGKSHIHFLRMNRK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.270960 | 11.812057 | 3.450048 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0423484 | SBH | 1.186243 | 0.0 | 2.620930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38206 | RBH | 86.225929 | 89.470322 | 18.545555 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0423484 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036480 | SBH | 90.978035 | 20.542953 | 96.795135 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035990 | RBH | 75.699196 | 3.828083 | 65.759842 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007590 | SBH | 163.258377 | 18.965307 | 128.266312 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013600 | SBH | 0.265914 | 0.147223 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013720 | SBH | 1720.075439 | 40.556133 | 797.819580 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013210 | SBH | 29.654196 | 1.836470 | 11.212577 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0201700 | SBH | 0.376647 | 0.037695 | 0.072254 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013730 | SBH | 23.575542 | 4.081563 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013670 | SBH | 3.457268 | 50.889935 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013380 | SBH | 177.761993 | 300.369934 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021280 | SBH | 56.036461 | 0.0 | 33.195236 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010010 | SBH | 118.832581 | 77.996162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017720 | RBH | 37.692406 | 14.487440 | 46.931973 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009690 | SBH | 450.256531 | 266.129089 | 1073.055176 |
