Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0016370 | OGI:10059040 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:21778201-21782944 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accctccctactctctccacttccactctcaccggccaccgcgcgctctctctctctctctcccccttctcccgcaagattcttcccccaaatcccacccgatccaccgccgccgcccgctcgccggagtcccatcgctgccaccgccgccggagccgcggcccgacgcccgccgggcctgcttgctgtgtgtgtgaggaggtggagttgctcgcgctcgttcccgcggccacctccgcctgctgctgcttctgcttccgctggcattgcggggaggtcgtgtgccGggggacgtgggggctcgtgttggagcgcggctgccggtgaggtggggggtgcggcgcggcgcggctcgcgcttgtgcgccggtggcgcgggcgcggggggaagcgtacgggggagggggagtgtggcggcggcggcgcgcggggtagggacgggcgccgccaccaccaccggctcgttcgctggcaggcgctacgcgtccagatccgtacgccggtatgcttcgtctcgccgcaactctctccatttgattagtatcccctcgccgaaacgaggcctgtgaggcgcccgcttgctggctggcttccctgtactcgctgcttgctcctgcctgttgggttaacccgtttccatcgaatttgggtaagcgaaacatcgcctcatatgggcatttggggttctggcagccttaggctcgccatccgtcgccgagcttccaagtgaccggcgcttgttggtatatttgcttgcttgttcctgtttggtggctgcgctaaatcttttgtgctgcattgaatttatgccacccatatacagcaaattgctgagctgaaataattcggctaattaggtccagcaatatgacatctcgtggattgaatgctaagctgacattgtatcactgatgctggcttatatataggttgttgagaagtgaagatgtcgacaggtgaaaccctgcgtgcagagctatcatccaggacgccgcctttcGgtttgaggctatggattgtgattggaatcagtatttgggtggtgatcttctttatactaggtttcatgtgcctctggtccatataccgaaggaagccgaagaagtcctttgataagattccagtatctcaaatcccggatgtttccaaggagattgcagtagatgaagttcgtgagcatgctgttgtcgaaaacttccgtgtgcaagaaagccacgcgatatcggtgcaggagaaacattacgagaaagattcagggaaaatgctggcacacttggttaggagtaaatcgagtgatgccgataatttgagccaatgcagctcggtgtaccaatgtgatagggctggtagctcgtattctggtgatgaaggcagctcgggcaatgctaggaggcacttttctcaatatgcaactgtctcagcatCccctctggttggtctcccagaattctctcatctgggctggggtcattggtttactctgagagatttggagcatgcaacaaatcggttttccaaggagaatgtcattggagagggtggatatggggtagtttaccgtggtcgactcataaatggaactgacgtcgcaataaagaagcttcttaataatatgtaagagatcctgaaatctattctgcgttttacagaacttgtgactccttctgatgccatcatattaattttcttttgatatggtgctgcaGgggccaggcagaaaaggagttcaGggttgaagttgaggctattggccacgtcaggcataagaatcttgtccgccttctaggatattgtgttgagggaatccacaggtaaagctatttatcaatcacctttgctgatggatggctagcttttgtttctactggcacattatttacttgcatagggatgtaggattgctcttggtctatgtccacctactcaccagattatctcaagggataggttattcctgactgcactccttatgctatcgattttttcccttccaaatctgatggtgggattcagcatgCccagtgacagattatgctcagtccacagaaaccttctttggaccaccattcttttaccatgaaaatgtggccatagctctgaaagctaggattcactagaagcgcacaactgcttattggtttgttagttggctataacaaggtcttactgaaatgtacttccatagttcattactttgtgaatgcctgttcttgttcttcacgtttcttctcatgcatgttcaattctaaatttgtattcatgatatgtccaagctactgtattctccaaagaaaatcagaagtccattcacctatgtattttccagttttccgccattttggatactgctctagaaacaagttaataatatagatatttatatggtttggccagtgctgcttaagtgaccatcgagatagaaattgcttaagaaatatactaagatgttgagtgtcaggtgttttcggataatctagttaccaacaaataggtcctatgaatataatggtgtctgcttcacgtaattcaaaatccacactcagccaaaataatctgcaatagggtgttgaaaatatgattatgtttctcccttgttttcatcatgactacagaaatgaacaatgttgctacatcttgtaataatttgtggttttcaattgaacaaaacatccatcaaatgatatctacagcaatatattttgcacttctgagcacacaataggtttgagtgtattcgagtcatggtcattgatttaagctttttatttcactacataaccattgatttgagtgtatctaaggagttctgtttccacaagtactttatgttaatggtgtctccttatgctttggccatccaaactcattactgttgtttaatatttttagtggttagtggtgtccaaatctttctttgtgtacatcatactatgtttttgtagtctattaaacttccatcctatcatctgacttgttatattccaggatgcttgtatacgaatatgtgaataacgggaacttagaacagtggcttcatggtgccatgcgccaacatggtgttcttacctgggaagcccgaatgaaagttgttcttggaattgctaaagcgtaagaaacaaaccatcgtccccgtcaaaaagaaaagaattgttcttcactttagctcttttatatgtatatgtttagttgcataacccattttccataactgaattggtatacaggcttgcttatttacatgaagcaatagagccaaaagttgtacaccgggatatcaaatcaagcaacatactaatcgatgaagaattcaatggcaaactttctgattttggcttggctaagatgctgggtgcagggaagagccatatcacaactcgagttatgggaacttttgggtatgttgatatttttttggagttagtattaatctttcctatgcttagcttttactgttggaatgtgcagtacttcgcttattcatacaatataaaattttacatgctgcgaactttgtccttcgtatattataacaggtagctttctcattgctatcattgattcatttcaggtatgtggcccctgagtatgccaacacaggtctgttaaacgagaagagtgatgtctacagttttggtgtgctattactggaagcagtgactggtagagatccagttgattATGGCCGGCCTGCTAATGAGGTGAGCATATATCCTACAATCTCATGCGTATTATGTATGTTACAAAAGTCCGTACTATTGGAAATTATTTTACGGCAAAATAACGTCTATACTAGGAGAGACGAATTTGCTTCAGGTGTATGGCTGTCTGGCAGTTGTCTACTGTCTAGTTACCCTTGTCTCACTTTTACAGTCTATTGTTTTATTTTTCAGGAGCTGACTAGCTGTATACCTTGTCATATATAACAACATTGTAACGTGGATGCCTTGCAGGTGCATCTAGTGGAGTGGCTCAAAATGATGGTTGGCACAAGAAGATCTGAAGAGGTAGTTGACCCTGACATGGAGGTCAAACCGACCATTCGGGCTCTTAAGCGTGCTCTCCTAGTGGCACTGAGGTGCGTCGACCCAGACTCTGAGAAAAGACCTACTATGGGTCATGTTGTTCGGATGCTCGAGGCAGAAGATGTCCCATCCCGTGAGGTGGTggtaacgctttctcctttcctgcaataacattcatcatattatatcattgcaataaatctgaagcttttgctgtaatcctactgaaggaccggaggagccggaggggcaacactgccaatgcagataccgagtccaagacaagctcaagcgaattcgagataagtggcgatagaagggactcagggccatcagcaaggtttcaaccctaagaagacggtgatcatagtcaagaacaatggcttcaaaactctatgcagtaacatggtggttggcagagaaaaaggggtatttctggagggcattgcattttgtattgtaggtctgcatggcggtagagactggagagagcacagtgtctgatgatggatacccggagacctgtaattcccattcagtattctgtttgctagtcaagcagcttgtacagatcgttgtctgttccattttttcattcttctggtttttttgtttaggaggctcttggattaccagtacgaaccgctgtctcttttctagaatcaccaacatggaacctatcaatatttactactagtactacgacttgcTttcttcttgctg
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| CDS seq | atgtcgacaggtgaaaccctgcgtgcagagctatcatccaggacgccgcctttcGgtttgaggctatggattgtgattggaatcagtatttgggtggtgatcttctttatactaggtttcatgtgcctctggtccatataccgaaggaagccgaagaagtcctttgataagattccagtatctcaaatcccggatgtttccaaggagattgcagtagatgaagttcgtgagcatgctgttgtcgaaaacttccgtgtgcaagaaagccacgcgatatcggtgcaggagaaacattacgagaaagattcagggaaaatgctggcacacttggttaggagtaaatcgagtgatgccgataatttgagccaatgcagctcggtgtaccaatgtgatagggctggtagctcgtattctggtgatgaaggcagctcgggcaatgctaggaggcacttttctcaatatgcaactgtctcagcatCccctctggttggtctcccagaattctctcatctgggctggggtcattggtttactctgagagatttggagcatgcaacaaatcggttttccaaggagaatgtcattggagagggtggatatggggtagtttaccgtggtcgactcataaatggaactgacgtcgcaataaagaagcttcttaataatatgggccaggcagaaaaggagttcaGggttgaagttgaggctattggccacgtcaggcataagaatcttgtccgccttctaggatattgtgttgagggaatccacaggatgcttgtatacgaatatgtgaataacgggaacttagaacagtggcttcatggtgccatgcgccaacatggtgttcttacctgggaagcccgaatgaaagttgttcttggaattgctaaagcgcttgcttatttacatgaagcaatagagccaaaagttgtacaccgggatatcaaatcaagcaacatactaatcgatgaagaattcaatggcaaactttctgattttggcttggctaagatgctgggtgcagggaagagccatatcacaactcgagttatgggaacttttgggtatgtggcccctgagtatgccaacacaggtctgttaaacgagaagagtgatgtctacagttttggtgtgctattactggaagcagtgactggtagagatccagttgattATGGCCGGCCTGCTAATGAGGTGCATCTAGTGGAGTGGCTCAAAATGATGGTTGGCACAAGAAGATCTGAAGAGGTAGTTGACCCTGACATGGAGGTCAAACCGACCATTCGGGCTCTTAAGCGTGCTCTCCTAGTGGCACTGAGGTGCGTCGACCCAGACTCTGAGAAAAGACCTACTATGGGTCATGTTGTTCGGATGCTCGAGGCAGAAGATGTCCCATCCCGTGAGgaccggaggagccggaggggcaacactgccaatgcagataccgagtccaagacaagctcaagcgaattcgagataagtggcgatagaagggactcagggccatcagcaaggtttcaaccctaa
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| Protein seq | MSTGETLRAELSSRTPPFGLRLWIVIGISIWVVIFFILGFMCLWSIYRRKPKKSFDKIPVSQIPDVSKEIAVDEVREHAVVENFRVQESHAISVQEKHYEKDSGKMLAHLVRSKSSDADNLSQCSSVYQCDRAGSSYSGDEGSSGNARRHFSQYATVSASPLVGLPEFSHLGWGHWFTLRDLEHATNRFSKENVIGEGGYGVVYRGRLINGTDVAIKKLLNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGIHRMLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVVLGIAKALAYLHEAIEPKVVHRDIKSSNILIDEEFNGKLSDFGLAKMLGAGKSHITTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEAVTGRDPVDYGRPANEVHLVEWLKMMVGTRRSEEVVDPDMEVKPTIRALKRALLVALRCVDPDSEKRPTMGHVVRMLEAEDVPSREDRRSRRGNTANADTESKTSSSEFEISGDRRDSGPSARFQP |
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| Function | Probable receptor-like protein kinase At2g42960 [UniProtKB/Swiss-Prot:Q9SJG2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0016370 | OsKeNa_10g0016370.01 | Chr10 | 21778201 | 21782944 | + | NAM | ||
| CDS seq | atgtcgacaggtgaaaccctgcgtgcagagctatcatccaggacgccgcctttcGgtttgaggctatggattgtgattggaatcagtatttgggtggtgatcttctttatactaggtttcatgtgcctctggtccatataccgaaggaagccgaagaagtcctttgataagattccagtatctcaaatcccggatgtttccaaggagattgcagtagatgaagttcgtgagcatgctgttgtcgaaaacttccgtgtgcaagaaagccacgcgatatcggtgcaggagaaacattacgagaaagattcagggaaaatgctggcacacttggttaggagtaaatcgagtgatgccgataatttgagccaatgcagctcggtgtaccaatgtgatagggctggtagctcgtattctggtgatgaaggcagctcgggcaatgctaggaggcacttttctcaatatgcaactgtctcagcatCccctctggttggtctcccagaattctctcatctgggctggggtcattggtttactctgagagatttggagcatgcaacaaatcggttttccaaggagaatgtcattggagagggtggatatggggtagtttaccgtggtcgactcataaatggaactgacgtcgcaataaagaagcttcttaataatatgggccaggcagaaaaggagttcaGggttgaagttgaggctattggccacgtcaggcataagaatcttgtccgccttctaggatattgtgttgagggaatccacaggatgcttgtatacgaatatgtgaataacgggaacttagaacagtggcttcatggtgccatgcgccaacatggtgttcttacctgggaagcccgaatgaaagttgttcttggaattgctaaagcgcttgcttatttacatgaagcaatagagccaaaagttgtacaccgggatatcaaatcaagcaacatactaatcgatgaagaattcaatggcaaactttctgattttggcttggctaagatgctgggtgcagggaagagccatatcacaactcgagttatgggaacttttgggtatgtggcccctgagtatgccaacacaggtctgttaaacgagaagagtgatgtctacagttttggtgtgctattactggaagcagtgactggtagagatccagttgattATGGCCGGCCTGCTAATGAGGTGCATCTAGTGGAGTGGCTCAAAATGATGGTTGGCACAAGAAGATCTGAAGAGGTAGTTGACCCTGACATGGAGGTCAAACCGACCATTCGGGCTCTTAAGCGTGCTCTCCTAGTGGCACTGAGGTGCGTCGACCCAGACTCTGAGAAAAGACCTACTATGGGTCATGTTGTTCGGATGCTCGAGGCAGAAGATGTCCCATCCCGTGAGgaccggaggagccggaggggcaacactgccaatgcagataccgagtccaagacaagctcaagcgaattcgagataagtggcgatagaagggactcagggccatcagcaaggtttcaaccctaa
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| Protein seq | MSTGETLRAELSSRTPPFGLRLWIVIGISIWVVIFFILGFMCLWSIYRRKPKKSFDKIPVSQIPDVSKEIAVDEVREHAVVENFRVQESHAISVQEKHYEKDSGKMLAHLVRSKSSDADNLSQCSSVYQCDRAGSSYSGDEGSSGNARRHFSQYATVSASPLVGLPEFSHLGWGHWFTLRDLEHATNRFSKENVIGEGGYGVVYRGRLINGTDVAIKKLLNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGIHRMLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVVLGIAKALAYLHEAIEPKVVHRDIKSSNILIDEEFNGKLSDFGLAKMLGAGKSHITTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEAVTGRDPVDYGRPANEVHLVEWLKMMVGTRRSEEVVDPDMEVKPTIRALKRALLVALRCVDPDSEKRPTMGHVVRMLEAEDVPSREDRRSRRGNTANADTESKTSSSEFEISGDRRDSGPSARFQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.086546 | 5.225078 | 1.670458 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497600 | RBH | 0.100970 | 0.103547 | 4.578428 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35450 | RBH | 0.068281 | 0.069644 | 1.178576 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016070 | RBH | 0.000000 | 6.510598 | 5.315660 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015750 | RBH | 0.173594 | 4.610136 | 7.607128 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016290 | RBH | 0.0 | 0.485712 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016050 | RBH | 4.132606 | 41.988461 | 11.461062 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0314600 | RBH | 7.1978865 | 6.9838205 | 26.505932 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015970 | RBH | 0.045996 | 0.896110 | 0.810114 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0337300 | RBH | 8.251786 | 2.6283295 | 46.711071 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015740 | RBH | 0.042572 | 0.062440 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015620 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016140 | RBH | 0.0 | 22.713121 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015850 | RBH | 0.315435 | 0.0 | 0.650644 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016270 | RBH | 0.0 | 3.877987 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015850 | RBH | 0.0 | 8.376139 | 4.165855 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016050 | RBH | 0.0 | 12.074410 | 5.705373 |
