Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0016170 | OGI:10058800 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:21658396-21663630 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtcttacaaaggttgtagcctgttcaatactattttcgcgttctcttttttttccccaaggaaattatcacttgtttaactcagcacacaatctgccagaaagAaaaatgtatggagcaaaatcaacaacatcagccaagctgaacgattaagcatacataaataaataataacggtgaaggaacgcaacgaaatggcagaggtctttctcaattaaaacaaaattttcatgatgcgtctgtttttttcaaaattgaaaacacatcatcatcgttttcattatctctggctaatgcttcgccttcttcttgggatgtgggattttctcttttctttttgttgttgacgaacccttctttgagggttgccgcttgttccgtttctttgatttctctttcttctgtttcttccactggctgtctgggtcgacgaaatcgtcatcgctgtcatcttcaacaggcatagagccatcatcctcatctgattccatattcttgtcctcatcttcgtcttcctcgtctgaactcaagatcaaatcctcaacaatatcctcctccgtagcgacatcgtcgtgattatgggctcgcttcttgctcttctcctttggagttctgcaaacccccgaaaggaaacatataacgtctaccattccaataaaagaaacaaaaagaggcaaagaggaaggtgatagcgtacttggttttcttcttttcagtcaacaagttcttactgaatgcaatggtgtcttcgccatcatcttgttcatcctgtcgcttctgtgcttctgacaacctccgtgAaaaggttgaggactctgcccccacaataacgctgatagggaaaagaatgatcagtaattttattaattatatgtactcgcaatatggagcatcaagcatagctccactcacatgtaaagactactagaaaatgttgcatgataagacgacgaggtaaaaaaaaattggtgcatttctgtttataagtgctacgactcaactggctgactcctaaatttagatgaacatcaatgaaaccaagtaaccaaccttgtgtcgtccagagagtccatcctgtcctgacttctctgatgtagagtagcaacatattttgatagaggacttgactttgcttccttctcaacctgaaatgaacattatatatctcacaaaatgacactaaatgagtataacaaatatacagtgcacatccaacaggaccaaccatacctgtagaaatgaatccacggctggatcattaggagagaatccaattcctgcacgctttgagcttacaaactcagcactagcctttatctggaatcacaaaggatacaaacatcagcatacatgcattcagttaggtacaattctctcttacatgcttcacaaacctgatggataagatctttgatctctctccggaatctgtcagccttaacggttttgcaaaagttttgaagccggacaagtgttaaaaaggacatctcaaagaaggcaatggagtagctccattgggccaaatgcttagccaactcatcaaccgcggaaaagatgcatgcttcctgaaaggcacgtgtcttcactgttttcttatctacctgccagacaaaagtacctattaaaagttttttcaaagtagtcctcccaaaggaagtgttgtattacgagaaaatatacctgtttaacactgaacagattcactgctttgcctacagcatctggtttccctccaagttctttcatttccagcatatcaagcagcagggaagacaccggaatgaaggtaccagtagcttcagcaatgcgattaagcatcttcacacatctcaggcgtacaggaaagtaacgcgcacttggtaccaggcatgccacaccatgtattatctgggttagtggataagccaaaggtcgaaggtcttcctcagaactacatccacacacaacacttgtccaaagctcaaggcagaatatgtattgccaatcataaactttttggtaggatttctacacaagaacaaggtcagcaaataacaagtcagaaaagaaaggctcagttagagtaatagaatatagaatagagagtaaaactaaactaacataagaaagaaagcaatagtgttatcccaaagtggactctattcctcgatagtacatatgcaacattggaataatgacatacctccatccgtttcttcgttggtttgatactttctttctgctttttgtccttcgatgtcttgcaaaatgaaatagggaccacaaaacttgtcagctgccaagtaaataattacattgcagtatatgatcatcagagttcaactacacatacctttggtcctctttcagtaagagctccccttaggatgactgccagttgacggatgaaaacaaaagcatgctgatatgcactttgtgggtccacattgtacaattctctgacacaattaccaagaaattgaatgtgctgcaattttgatccactgattgatttggacaatttacagttcaccaaataagccttgtagatacccttgagggacgtatcaaggcactccgaacctagttgaatgcacaaatctcgaaggaacaaaaatgaaacaagaggcatagcacctcgtcctctagaccaggtatgcagcagagcctgtaatcgaattagtcaagtgaaaataaaagaaattacaaactctgcagagacatcagatgacacgaaaggttactaaagatggatgaggagccaaagctacaaacctttacatacttcctgaggagtgcagggaaggccgccagaaaaacagcagaagctctgacacgatgtacagtaaatgctaccatttgctcatcagtcaactctgttatcatgtggagtgcatttacaaggtataacctcattaatctcccatgcctcttccattgcttagtaatcatcagctcactaactgtctctttcttccccccaaagctaggtgcatcaagtaattcacgaaggattctatccatgtttttcaaaacAAagtgcatgactttgtcaagtacactgccagacatgacactaaatttcggtgcagaattaTttccactttcttcaccataatggcaggctttccggaatgcttcgagaatagaccggatagaacctatcttcccatcttctgctccttggcaccaggaatcaaccatttgcattgtaataggctttacaatttctttcggttcttctttaggaacagaactatgtttctcagcacttccttcattatcctaaacaaaatatgcagcaaacatacaatgtatatagttctctcaagcaagaagaaaaaaaaatgcaaaataaatgaataaatagttttgtgttacatcaaagtcatcatcgtcgaattccagaagctctttatcacactcttccaaatacttgtagaactcaggatcctacaaataagagttttgcagccatcgtaagcagctgacagaatacagcagcacagatatgacaagaactagggatggaagaaatgattagctcaagaaaaacttcctggttgttgcagtgttaacaatgatgcatacagataagaatttcagcaataaattgaacaatgataattatcatctaaatttgtaaaaagccgtctaatggtcactaccaggaaacAaaaagtatcaattatttttagaataagactgtccaaaagtcgagtcaataacatgttctttattccaaaaaagagggctagttcaaagtgcaagcaactaatctgaaagtacttaaactggaatctggatgtgcttaacacatatgatttcttcagtttcatctgtcccaattgcaatgccagggccgctaaaccagagccataggttattccacactaaaagtgcaagtagaactgtagaactacctttatgtataaacagctataaatccaacgtaagcagaaaaaaatcataacagtactgagctacgtaattctagatatcaaaagtactctttacataccagcaatccctatgacattacaactagcttcctgagggcaagttttatagtggaggtgagtgccacatctaatttaaaccatgtcatcttctcattacttaagaggtaacaaatacaacatgtcacatctagtacacaaaccccaatattagtttactctcacgtcatcttacatttttcttggagattgtgtggaggttgccccttgcatgagggatggctcattctctctctcctaacttctctcctccaactcatcatctaatcctatgtggcaaatttatgggcaataaataggggcttatagtacttgccctgattaccaaatgcacaatcagaacttgagatttagtttaccatcaccttcttcaaaatgatcagaatggctaaaatatatcattatatttgttaaggaacttgtatgccttgcttatagtacttatttgcagcaaccacgtcactattcagtactctgcacaaacttccgcgtgtaaaactcggaagattgcagtccatttccaaaatcaataaaatcaatcaacaagggccaaccagacaagtttaccaaatgcatacgagagcgagccaatatccacctattaagcatgcaatataccttctaacattcactgccttgcgtgctcagtcctagtataaatataagaataaaaAACacataccagaataacacataccagaataaaaaacacataccagaatccccaatcctagtataaacagcccaaagctaaatcaacataggcattacatatggaatggagccgagcaattcagatgctacttttgatgcttactagtaacaagtaataatagtaagcaatataagcttgggagaagggtgcgcgaatcgtaggagacggcgaggacggagacgaaccttctcctggagcctcttgagctgcttcgcgtgaaccttggccttcttacgagagcccaccttctcctcgtcctcctccgactccccatcctcccactcctcctcatccgacacgggcaagtcgactaaacccagcaaagccaaacgttgtcaaaactaacacaaacagtgcatagaggagaggacgaggagaagaagcggcggggaacgcaccgtactcgtcggagtccgacatggctgacggcggcggcggCggcggcggcggcgtgccctagtggaggcggcggcggcggcggcgtgccctagtggaggcggcggcggcgggttggggaactgaa
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| CDS seq | atgtcggactccgacgagtacgtcgacttgcccgtgtcggatgaggaggagtgggaggatggggagtcggaggaggacgaggagaaggtgggctctcgtaagaaggccaaggttcacgcgaagcagctcaagaggctccaggagaaggatcctgagttctacaagtatttggaagagtgtgataaagagcttctggaattcgacgatgatgactttgatgataatgaaggaagtgctgagaaacatagttctgttcctaaagaagaaccgaaagaaattgtaaagcctattacaatgcaaatggttgattcctggtgccaaggagcagaagatgggaagataggttctatccggtctattctcgaagcattccggaaagcctgccattatggtgaagaaagtggaaAtaattctgcaccgaaatttagtgtcatgtctggcagtgtacttgacaaagtcatgcactTTgttttgaaaaacatggatagaatccttcgtgaattacttgatgcacctagctttggggggaagaaagagacagttagtgagctgatgattactaagcaatggaagaggcatgggagattaatgaggttataccttgtaaatgcactccacatgataacagagttgactgatgagcaaatggtagcatttactgtacatcgtgtcagagcttctgctgtttttctggcggccttccctgcactcctcaggaagtatgtaaaggctctgctgcatacctggtctagaggacgaggtgctatgcctcttgtttcatttttgttccttcgagatttgtgcattcaactaggttcggagtgccttgatacgtccctcaagggtatctacaaggcttatttggtgaactgtaaattgtccaaatcaatcagtggatcaaaattgcagcacattcaatttcttggtaattgtgtcagagaattgtacaatgtggacccacaaagtgcatatcagcatgcttttgttttcatccgtcaactggcagtcatcctaaggggagctcttactgaaagaggaccaaagacatcgaaggacaaaaagcagaaagaaagtatcaaaccaacgaagaaacggatggagaaatcctaccaaaaagtttatgattggcaatacatattctgccttgagctttggacaagtgttgtgtgtggatgtagttctgaggaagaccttcgacctttggcttatccactaacccagataatacatggtgtggcatgcctggtaccaagtgcgcgttactttcctgtacgcctgagatgtgtgaagatgcttaatcgcattgctgaagctactggtaccttcattccggtgtcttccctgctgcttgatatgctggaaatgaaagaacttggagggaaaccagatgctgtaggcaaagcagtgaatctgttcagtgttaaacaggtagataagaaaacagtgaagacacgtgcctttcaggaagcatgcatcttttccgcggttgatgagttggctaagcatttggcccaatggagctactccattgccttctttgagatgtcctttttaacacttgtccggcttcaaaacttttgcaaaaccgttaaggctgacagattccggagagagatcaaagatcttatccatcagataaaggctagtgctgagtttgtaagctcaaagcgtgcaggaattggattctctcctaatgatccagccgtggattcatttctacaggttgagaaggaagcaaagtcaagtcctctatcaaaatatgttgctactctacatcagagaagtcaggacaggatggactctctggacgacacaagcgttattgtgggggcagagtcctcaacctttTcacggaggttgtcagaagcacagaagcgacaggatgaacaagatgatggcgaagacaccattgcattcagtaagaacttgttgactgaaaagaagaaaaccaaaactccaaaggagaagagcaagaagcgagcccataatcacgacgatgtcgctacggaggaggatattgttgaggatttgatcttgagttcagacgaggaagacgaagatgaggacaagaatatggaatcagatgaggatgatggctctatgcctgttgaagatgacagcgatgacgatttcgtcgacccagacagccagtggaagaaacagaagaaagagaaatcaaagaaacggaacaagcggcaaccctcaaagaagggttcgtcaacaacaaaaagaaaagagaaaatcccacatcccaagaagaaggcgaagcattag
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| Protein seq | MSDSDEYVDLPVSDEEEWEDGESEEDEEKVGSRKKAKVHAKQLKRLQEKDPEFYKYLEECDKELLEFDDDDFDDNEGSAEKHSSVPKEEPKEIVKPITMQMVDSWCQGAEDGKIGSIRSILEAFRKACHYGEESGNNSAPKFSVMSGSVLDKVMHFVLKNMDRILRELLDAPSFGGKKETVSELMITKQWKRHGRLMRLYLVNALHMITELTDEQMVAFTVHRVRASAVFLAAFPALLRKYVKALLHTWSRGRGAMPLVSFLFLRDLCIQLGSECLDTSLKGIYKAYLVNCKLSKSISGSKLQHIQFLGNCVRELYNVDPQSAYQHAFVFIRQLAVILRGALTERGPKTSKDKKQKESIKPTKKRMEKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRPLAYPLTQIIHGVACLVPSARYFPVRLRCVKMLNRIAEATGTFIPVSSLLLDMLEMKELGGKPDAVGKAVNLFSVKQVDKKTVKTRAFQEACIFSAVDELAKHLAQWSYSIAFFEMSFLTLVRLQNFCKTVKADRFRREIKDLIHQIKASAEFVSSKRAGIGFSPNDPAVDSFLQVEKEAKSSPLSKYVATLHQRSQDRMDSLDDTSVIVGAESSTFSRRLSEAQKRQDEQDDGEDTIAFSKNLLTEKKKTKTPKEKSKKRAHNHDDVATEEDIVEDLILSSDEEDEDEDKNMESDEDDGSMPVEDDSDDDFVDPDSQWKKQKKEKSKKRNKRQPSKKGSSTTKRKEKIPHPKKKAKH |
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| Function | Nucleolar complex protein 2 homolog [UniProtKB/Swiss-Prot:Q8LNU5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0016170 | OsKeNa_10g0016170.01 | Chr10 | 21658396 | 21663630 | - | NAM | ||
| CDS seq | atgtcggactccgacgagtacgtcgacttgcccgtgtcggatgaggaggagtgggaggatggggagtcggaggaggacgaggagaaggtgggctctcgtaagaaggccaaggttcacgcgaagcagctcaagaggctccaggagaaggatcctgagttctacaagtatttggaagagtgtgataaagagcttctggaattcgacgatgatgactttgatgataatgaaggaagtgctgagaaacatagttctgttcctaaagaagaaccgaaagaaattgtaaagcctattacaatgcaaatggttgattcctggtgccaaggagcagaagatgggaagataggttctatccggtctattctcgaagcattccggaaagcctgccattatggtgaagaaagtggaaAtaattctgcaccgaaatttagtgtcatgtctggcagtgtacttgacaaagtcatgcactTTgttttgaaaaacatggatagaatccttcgtgaattacttgatgcacctagctttggggggaagaaagagacagttagtgagctgatgattactaagcaatggaagaggcatgggagattaatgaggttataccttgtaaatgcactccacatgataacagagttgactgatgagcaaatggtagcatttactgtacatcgtgtcagagcttctgctgtttttctggcggccttccctgcactcctcaggaagtatgtaaaggctctgctgcatacctggtctagaggacgaggtgctatgcctcttgtttcatttttgttccttcgagatttgtgcattcaactaggttcggagtgccttgatacgtccctcaagggtatctacaaggcttatttggtgaactgtaaattgtccaaatcaatcagtggatcaaaattgcagcacattcaatttcttggtaattgtgtcagagaattgtacaatgtggacccacaaagtgcatatcagcatgcttttgttttcatccgtcaactggcagtcatcctaaggggagctcttactgaaagaggaccaaagacatcgaaggacaaaaagcagaaagaaagtatcaaaccaacgaagaaacggatggagaaatcctaccaaaaagtttatgattggcaatacatattctgccttgagctttggacaagtgttgtgtgtggatgtagttctgaggaagaccttcgacctttggcttatccactaacccagataatacatggtgtggcatgcctggtaccaagtgcgcgttactttcctgtacgcctgagatgtgtgaagatgcttaatcgcattgctgaagctactggtaccttcattccggtgtcttccctgctgcttgatatgctggaaatgaaagaacttggagggaaaccagatgctgtaggcaaagcagtgaatctgttcagtgttaaacaggtagataagaaaacagtgaagacacgtgcctttcaggaagcatgcatcttttccgcggttgatgagttggctaagcatttggcccaatggagctactccattgccttctttgagatgtcctttttaacacttgtccggcttcaaaacttttgcaaaaccgttaaggctgacagattccggagagagatcaaagatcttatccatcagataaaggctagtgctgagtttgtaagctcaaagcgtgcaggaattggattctctcctaatgatccagccgtggattcatttctacaggttgagaaggaagcaaagtcaagtcctctatcaaaatatgttgctactctacatcagagaagtcaggacaggatggactctctggacgacacaagcgttattgtgggggcagagtcctcaacctttTcacggaggttgtcagaagcacagaagcgacaggatgaacaagatgatggcgaagacaccattgcattcagtaagaacttgttgactgaaaagaagaaaaccaaaactccaaaggagaagagcaagaagcgagcccataatcacgacgatgtcgctacggaggaggatattgttgaggatttgatcttgagttcagacgaggaagacgaagatgaggacaagaatatggaatcagatgaggatgatggctctatgcctgttgaagatgacagcgatgacgatttcgtcgacccagacagccagtggaagaaacagaagaaagagaaatcaaagaaacggaacaagcggcaaccctcaaagaagggttcgtcaacaacaaaaagaaaagagaaaatcccacatcccaagaagaaggcgaagcattag
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| Protein seq | MSDSDEYVDLPVSDEEEWEDGESEEDEEKVGSRKKAKVHAKQLKRLQEKDPEFYKYLEECDKELLEFDDDDFDDNEGSAEKHSSVPKEEPKEIVKPITMQMVDSWCQGAEDGKIGSIRSILEAFRKACHYGEESGNNSAPKFSVMSGSVLDKVMHFVLKNMDRILRELLDAPSFGGKKETVSELMITKQWKRHGRLMRLYLVNALHMITELTDEQMVAFTVHRVRASAVFLAAFPALLRKYVKALLHTWSRGRGAMPLVSFLFLRDLCIQLGSECLDTSLKGIYKAYLVNCKLSKSISGSKLQHIQFLGNCVRELYNVDPQSAYQHAFVFIRQLAVILRGALTERGPKTSKDKKQKESIKPTKKRMEKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRPLAYPLTQIIHGVACLVPSARYFPVRLRCVKMLNRIAEATGTFIPVSSLLLDMLEMKELGGKPDAVGKAVNLFSVKQVDKKTVKTRAFQEACIFSAVDELAKHLAQWSYSIAFFEMSFLTLVRLQNFCKTVKADRFRREIKDLIHQIKASAEFVSSKRAGIGFSPNDPAVDSFLQVEKEAKSSPLSKYVATLHQRSQDRMDSLDDTSVIVGAESSTFSRRLSEAQKRQDEQDDGEDTIAFSKNLLTEKKKTKTPKEKSKKRAHNHDDVATEEDIVEDLILSSDEEDEDEDKNMESDEDDGSMPVEDDSDDDFVDPDSQWKKQKKEKSKKRNKRQPSKKGSSTTKRKEKIPHPKKKAKH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.030157 | 3.197638 | 1.550768 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495500 | RBH | 2.219632 | 1.489539 | 2.881059 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35280 | RBH | 1.418932 | 0.946223 | 0.734138 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015930 | RBH | 0.343035 | 5.599615 | 5.026149 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015560 | RBH | 1.148309 | 5.012007 | 6.705415 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016060 | RBH | 0.056330 | 0.417484 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015890 | RBH | 3.125519 | 5.999286 | 9.903179 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0312900 | RBH | 0.7743535 | 1.045657 | 0.911651 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015800 | RBH | 0.234131 | 0.802750 | 0.859584 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0335200 | RBH | 6.094839 | 8.060201 | 14.8468065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015560 | RBH | 0.184648 | 0.104698 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015440 | RBH | 0.243504 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015940 | RBH | 0.000000 | 30.664557 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015690 | RBH | 0.337349 | 0.0 | 0.206360 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016100 | RBH | 0.108456 | 4.653594 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015710 | RBH | 0.485753 | 6.444293 | 2.208515 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015850 | RBH | 1.249315 | 14.821166 | 8.153841 |
