Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0010480 | OGI:10046550 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:16510895-16512602 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcctttggagtagccaaaatacttgtcaGgggctcaaatatgatgaaatctgatggtgctgcttctggagaaagaaaaataggtatcctggcctttgaggtggccaacacaattgtcagtggatcaaaccttatgaaatccctctctgaagaaagtgtgagtcatctgaatgaagttgtgcttcagtgtgaaGgtgtccgcactctgatttcagaacagtactatcaattgctcattattcatcaagctgacataaggtaagctatgcattttcatgtggatgttttgtagatgaactttccaagattacttatatatatatttactgcaaactatgcagagaacagttgagaagatttgctttagatgttattaggcttggaaagctgtgcaaagatcctgtatggcgcaacttggatctttattttaacaagtaaacaaaacataatgttcttctgctactttgaccctgcaaatacaactttttaccatgaatttttaccagctaatttatagtggagctcattgattcatctccattcatgtatccctttttgctcttcttgtcaatgtagattagagctactttacaaatctcgagaatacgttattttggaatcagaactggcatgcagcaaagaagaagcagtttctgcaatgcaatatctattAaaacgtgcacaatacaccatggtcagtgattcatactctctaattcatgataattgtctttttgaaatcttgttgccttttctgttctctcattctattaattgccaggaactgtataaggaaatgtgtgtgttggacaagttcgaacaggggaaacctacagtggtacaaagtggtttgtaactttgtattaaaTttttTGACATAGGCATCCAAATAAGATACAAATTTAATGTGAATATTCTCTTGCCGGTTTCAATAAAACCGCTGCCGTATGCAGGTATAACAATTAGTTCAGTGAAGAACCAAAGGATTGCTGTGGCAAACCTGCAGAAGAAGTCACTTTGGTCCAAGAAGATGGATGATGTAGTGCAACATCTTGATATGTCATCAATATTTGTTCTATCTGATCCATATCTTACAATAATGCTCCATATGTTCTGTTGCAGATTGTACAAAAACTTGTAGACATTGTGCTGCTCATTTATTTGGAGATCAACAAAGTTTTTTTGCATACTGGTGAAGACCATTATGTAGAGGCAGTGGGCAACCTGCTTGGGGAAACGTTAGGTTCCACTGGACTTGCCTTGCAATATTCAAAAGTTATTTTGCAGATAAATAAACTGGTACATCACTGTTTCTCTGGTGCTATGCCATCTTCAACATGAAAAATGATATTAAATTACCACTTAATGGTCAGATATTGACATTGTTCTTTCTTTAGATTATGCCTTGTCCTATATTTTTTTATGACTTtcattgttttcaggcattggcctttgagaaaaccgatccctcagtcttgaagtctgttcctaaggaagctaaagatgcattataccaaatgcttcctccttgcatcaaattagtattttatagaaagttgaagccgtttttgtccatagataaggtagtctctcttttacaacaactcaacatgagaaatatcatacagtattcatctatttcaaatttgatctcagtactaatattttatcgtagacatctgaagaagaggtcagagctgaaatga
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| CDS seq | atggcctttggagtagccaaaatacttgtcaGgggctcaaatatgatgaaatctgatggtgctgcttctggagaaagaaaaataggtatcctggcctttgaggtggccaacacaattgtcagtggatcaaaccttatgaaatccctctctgaagaaagtgtgagtcatctgaatgaagttgtgcttcagtgtgaaGgtgtccgcactctgatttcagaacagtactatcaattgctcattattcatcaagctgacataagagaacagttgagaagatttgctttagatgttattaggcttggaaagctgtgcaaagatcctgtatggcgcaacttggatctttattttaacaaattagagctactttacaaatctcgagaatacgttattttggaatcagaactggcatgcagcaaagaagaagcagtttctgcaatgcaatatctattAaaacgtgcacaatacaccatggaactgtataaggaaatgtgtgtgttggacaagttcgaacaggggaaacctacagtggtacaaagtgGCATCCAAATAAGATACAAATTTAATGTGAATATTCTCTTGCCGGTTTCAATAAAACCGCTGCCGTATGCAGGTATAACAATTAGTTCAGTGAAGAACCAAAGGATTGCTGTGGCAAACCTGCAGAAGAAGTCACTTTGGTCCAAGAAGATGGATGATGTAATTGTACAAAAACTTGTAGACATTGTGCTGCTCATTTATTTGGAGATCAACAAAGTTTTTTTGCATACTGGTGAAGACCATTATGTAGAGGCAGTGGGCAACCTGCTTGGGGAAACGTTAGGTTCCACTGGACTTGCCTTGCAATATTCAAAAGTTATTTTGCAGATAAATAAACTGgcattggcctttgagaaaaccgatccctcagtcttgaagtctgttcctaaggaagctaaagatgcattataccaaatgcttcctccttgcatcaaattagtattttatagaaagttgaagccgtttttgtccatagataaggtagtctctcttttacaacaactcaacatgagaaatatcatacagtattcatctatttcaaatttgatctcagtactaatattttatcgtagacatctgaagaagaggtcagagctgaaatga
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| Protein seq | MAFGVAKILVRGSNMMKSDGAASGERKIGILAFEVANTIVSGSNLMKSLSEESVSHLNEVVLQCEGVRTLISEQYYQLLIIHQADIREQLRRFALDVIRLGKLCKDPVWRNLDLYFNKLELLYKSREYVILESELACSKEEAVSAMQYLLKRAQYTMELYKEMCVLDKFEQGKPTVVQSGIQIRYKFNVNILLPVSIKPLPYAGITISSVKNQRIAVANLQKKSLWSKKMDDVIVQKLVDIVLLIYLEINKVFLHTGEDHYVEAVGNLLGETLGSTGLALQYSKVILQINKLALAFEKTDPSVLKSVPKEAKDALYQMLPPCIKLVFYRKLKPFLSIDKVVSLLQQLNMRNIIQYSSISNLISVLIFYRRHLKKRSELK |
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| Function | Protein PSK SIMULATOR 1 [UniProtKB/Swiss-Prot:Q9XID5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0010480 | OsKeNa_10g0010480.01 | Chr10 | 16510895 | 16512602 | + | NAM | ||
| CDS seq | atggcctttggagtagccaaaatacttgtcaGgggctcaaatatgatgaaatctgatggtgctgcttctggagaaagaaaaataggtatcctggcctttgaggtggccaacacaattgtcagtggatcaaaccttatgaaatccctctctgaagaaagtgtgagtcatctgaatgaagttgtgcttcagtgtgaaGgtgtccgcactctgatttcagaacagtactatcaattgctcattattcatcaagctgacataagagaacagttgagaagatttgctttagatgttattaggcttggaaagctgtgcaaagatcctgtatggcgcaacttggatctttattttaacaaattagagctactttacaaatctcgagaatacgttattttggaatcagaactggcatgcagcaaagaagaagcagtttctgcaatgcaatatctattAaaacgtgcacaatacaccatggaactgtataaggaaatgtgtgtgttggacaagttcgaacaggggaaacctacagtggtacaaagtgGCATCCAAATAAGATACAAATTTAATGTGAATATTCTCTTGCCGGTTTCAATAAAACCGCTGCCGTATGCAGGTATAACAATTAGTTCAGTGAAGAACCAAAGGATTGCTGTGGCAAACCTGCAGAAGAAGTCACTTTGGTCCAAGAAGATGGATGATGTAATTGTACAAAAACTTGTAGACATTGTGCTGCTCATTTATTTGGAGATCAACAAAGTTTTTTTGCATACTGGTGAAGACCATTATGTAGAGGCAGTGGGCAACCTGCTTGGGGAAACGTTAGGTTCCACTGGACTTGCCTTGCAATATTCAAAAGTTATTTTGCAGATAAATAAACTGgcattggcctttgagaaaaccgatccctcagtcttgaagtctgttcctaaggaagctaaagatgcattataccaaatgcttcctccttgcatcaaattagtattttatagaaagttgaagccgtttttgtccatagataaggtagtctctcttttacaacaactcaacatgagaaatatcatacagtattcatctatttcaaatttgatctcagtactaatattttatcgtagacatctgaagaagaggtcagagctgaaatga
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| Protein seq | MAFGVAKILVRGSNMMKSDGAASGERKIGILAFEVANTIVSGSNLMKSLSEESVSHLNEVVLQCEGVRTLISEQYYQLLIIHQADIREQLRRFALDVIRLGKLCKDPVWRNLDLYFNKLELLYKSREYVILESELACSKEEAVSAMQYLLKRAQYTMELYKEMCVLDKFEQGKPTVVQSGIQIRYKFNVNILLPVSIKPLPYAGITISSVKNQRIAVANLQKKSLWSKKMDDVIVQKLVDIVLLIYLEINKVFLHTGEDHYVEAVGNLLGETLGSTGLALQYSKVILQINKLALAFEKTDPSVLKSVPKEAKDALYQMLPPCIKLVFYRKLKPFLSIDKVVSLLQQLNMRNIIQYSSISNLISVLIFYRRHLKKRSELK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0010500 | SBH | 0.542836 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0241600 | RBH | 0.57392 | 3.5533685 | 1.5596945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0010530 | SBH | 0.090042 | 0.138482 | 0.063073 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0260900 | RBH | 0.709271 | 8.0339375 | 9.2288575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0010320 | SBH | 0.042462 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0010290 | SBH | 0.093348 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0010740 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0010310 | SBH | 0.094188 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G010650 | SBH | 0.000000 | 0.441159 | 0.362640 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0010570 | SBH | 0.242041 | 0.000000 | 0.000000 |
