Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0006310 | OGI:10031140 | 10/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:10423601-10424443 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tctcccgccgtcacccggacctcgacgtcggcaaattctgacgacgccaactagcttgtctgactatcatgagcagactccctcgggattccatgaggtagcgagcaaggacctgctcctcctcctcgtcgtcgtcacggcgccggcgcggctggaagcgccacagtatccgctcgggagattcatggaagattgttagctctgggcacacacgaatgtgttcctctttggtgaggaaaaggaagtcctcatcgaggtagaggaggtcctccacttgttccaggggagaaagccacaccgtctgctctgcctctgagaacacccgatctgtaagctggattggctcaacgcaattaattgaattcatcacggaacaagagtacatatagccacaacctaaccataatatctcaaccgtattaacaacagaaacgggagatttaggaaaggatagcggcaaaccaaagataagactaaacatgttgaattatctctaacacgatcgcccatgggccagaacgcgatttggtggtgggagagaaaggaattgatgataccggcgacgatgcatccttgttcggttggagcccgtgagagggtggtggcgacgatgtcgacattctcaggatccatgcagtcgaagtggaagatcgcgctggggaggtcgatgtactcgttgaggttgacgaggacgtggtctatacctcggggtccatggccatcgacggcgaggaagagccaggcgccgtcatacgaaccgaagtagctggcgcagcgcggcgcgtgcgggaggaagaaggggtgggtgcggcgccagccgctgagggcgcaggagaaggtaag
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| CDS seq | atggatcctgagaatgtcgacatcgtcgccaccaccctctcacgggctccaaccgaacaaggatgcatcgtcgccggtatcatcaattcctttctctcccaccaccaaatcgcgttctggcccatgggcgatcgtcttacagatcgggtgttctcagaggcagagcagacggtgtggctttctcccctggaacaagtggaggacctcctctacctcgatgaggacttccttttcctcaccaaagaggaacacattcgtgtgtgcccagagctaacaatcttccatgaatctcccgagcggatactgtggcgcttccagccgcgccggcgccgtgacgacgacgaggaggaggagcaggtccttgctcgctacctcatggaatcccgagggagtctgctcatgatagtcagacaagctagttggcgtcgtcagaatttgccgacgtcgaggtccgggtga
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| Protein seq | MDPENVDIVATTLSRAPTEQGCIVAGIINSFLSHHQIAFWPMGDRLTDRVFSEAEQTVWLSPLEQVEDLLYLDEDFLFLTKEEHIRVCPELTIFHESPERILWRFQPRRRRDDDEEEEQVLARYLMESRGSLLMIVRQASWRRQNLPTSRSG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0006310 | OsKeNa_10g0006310.01 | Chr10 | 10423601 | 10424443 | - | NAM | ||
| CDS seq | atggatcctgagaatgtcgacatcgtcgccaccaccctctcacgggctccaaccgaacaaggatgcatcgtcgccggtatcatcaattcctttctctcccaccaccaaatcgcgttctggcccatgggcgatcgtcttacagatcgggtgttctcagaggcagagcagacggtgtggctttctcccctggaacaagtggaggacctcctctacctcgatgaggacttccttttcctcaccaaagaggaacacattcgtgtgtgcccagagctaacaatcttccatgaatctcccgagcggatactgtggcgcttccagccgcgccggcgccgtgacgacgacgaggaggaggagcaggtccttgctcgctacctcatggaatcccgagggagtctgctcatgatagtcagacaagctagttggcgtcgtcagaatttgccgacgtcgaggtccgggtga
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| Protein seq | MDPENVDIVATTLSRAPTEQGCIVAGIINSFLSHHQIAFWPMGDRLTDRVFSEAEQTVWLSPLEQVEDLLYLDEDFLFLTKEEHIRVCPELTIFHESPERILWRFQPRRRRDDDEEEEQVLARYLMESRGSLLMIVRQASWRRQNLPTSRSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006420 | RBH | 0.243558 | 2.294840 | 0.810393 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024940 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024950 | SBH | 0.0 | 0.0 | 0.173369 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006300 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0416300 | SBH | 0.0098215 | 0.002092 | 0.0100035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024620 | SBH | 0.0 | 0.0 | 0.049391 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0171200 | RBH | 0.0496725 | 0.166141 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024800 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024680 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0059310 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0006610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006420 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006540 | RBH | 0.0 | 0.0 | 0.0 |
