Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0006100 | OGI:10030090 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:10092263-10095142 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ataaaaactaaataaattgataattgcatctttcatgtacatatacttgcatagcttaacaattcagacatactgtagatttctcctgcttcgtggaagaacacggatatatcattgtaatatctggaaatccagatgcccaccaattcctgacaaagcataaaggtaaaaataaatctatttgtttggattaattaaattcaagatgtgtcaaaattgacttaagagtcaatataacagatcattaacactggtcatatgtaaattgagatattgaggtatatttgaaatgggattttttttcataaaaaagtatttgtagctatggttaggaaatactgtagaatcagactgcaagtggtagagatgaaccatgtgctgattttgaacaccacctacaacaaaaagaagcaatccatgaaaattggtcaactaagataatgtccgcaatagaaggtcaaaatgaccacataagacaTCataataaagattggataggatctatgtgttagtataaagcaaaatgagttaactaaaaagttcgcatgtaaaccacaaagaatgagctgaatagaagtgtactaattattgcagtagcaacttaaggagcaacaaaaaaaccacatttagctcatcaaatattaccaaactattgatgatccaatactgaaaatgaaactattcctcagctaatcggtcctgcaatgcaacgcaagaaaaacctaatccaataactcctaataaattagataataTGttttaagttttactaatgatgaattagATatattgctggactttaacatattttcAaaaacatggtaaatttatctcctagagttggatgtaaagattaaagttagactttctatgcaataagatgtactatacagttcatgaactgaacaaatttatagaaagcacgacctaggaggacatgacccatgaggtctagagaacttttgggttattcataatctctagatcaagattcatggtactaaatgtgtaatcctctatgtggaaactgcaaaatagtcctggcatgttatagtatccaagaacaattttcgtaaactcctctcgaaaaagtaaaaaactgaataattgctattacagctgaatacataacttgtatgtttagagaataagttatataggtgacagaatatgtgcgccatacaaagaggagaacatggggagtccatgtgaacggttcaacttagtactgcaagcactcgtgtaaacaggtaaaaccgatctatatagactaccgagcagagaatgaagaagcacatctagactttcccgcatgaccaagaagaaaaaactgaacacaacttgcttcacatttgtaatttgggcatgcaaaaacaaatggtttgctctaacatagagcaaatgttctagcagcgagaacaattgggttgcaaagacaaaaggaagatctaacatggagcaaaTtttatagtagcaagaacaattggttcgcggagctaattcaggtaagaattgctctcaaaaacggtaggatttagctatctaaggtatgctcaaatctgacaacatggctgcagaggcaaattagtaaagataataattcacattacactcagtaaacaataattgaagaacttgatgggttttaccttgaatcaaaggtttgatgtaggcaagcaacctttaatatatagaagctaaactcttaataatcatgcggagtgaaataagatgtagtgagataataatatagcttgttatcatgagaagtactccgtcgtatacatgggctgctagcaatccctggctgcgccaagctgccattgcatggatggccaagcaaaccagtttagcagagcttgttgtggcactccgtcgcaggctgcatttgcacagccacacatgcctcttggagaacagcacattcgtatgggctgctaagtagcttgttcttctccatatcaaaacatcaaggagagcattccagcgagcaaaatgtagatggatatatgcactcaactacaaactttaaaatttaagggatccatttggggaaaactcaccGgggttggcagaagtttcttgagtggattaagacatacgtgctaactccaactatttgattgtaatgaatatacaaatgattaggacaacaatcatatgaacacggccatgcctgaactaacaaaagcagaaacatatatgcgcatcttacctgcaactggtagaaataaaatccaagcaacctatggagtaccagcagatcttttgccattagataggttgctttgaaccactgctgcaagaaaaaaagggggatcgaaccaaaaaaatgaaatccagcaagatgagagagaaaattagatggggaaaattacctgttgtaaatgcgatgagatcttgccgcagaaaaagaactgatgcgagggggagggagcgcactgccacagagaaaaaaaaaggtggagggcgccgtggggggattcgcgtgcccgtgccttgcccccatcctcaccaagatgtgaccgtcctcactggcagatgaggatggtggccggtggcggctcacgttcctcttctccaggcggatggattttttattgcagatgcggcgacctgattggaaagagcggcagtggcggaagcactctgttcacgattagaggagggcgacattgcggcggcagcacacgtacgggaagaggcgagaaggcggtggcgaggcagagttaaaagaggagaagaggcggcgacggcttgcatcccttccaccgcggaggagaccggggtcgccgtaggtagatgcgattacggcggcggcggcgtgcgagaggagaggggaggagggcaagggcgcacgcgagtcgcacgtggctgggg
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| CDS seq | atgtcgccctcctctaatcgtgaacagagtgcttccgccactgccgctctttccaatcagtgcgctccctccccctcgcatcagttctttttctgcggcaagatctcatcgcatttacaacagcagtggttcaaagcaacctatctaatggcaaaagatctgctggtactccataggttgcttggattttatttctaccagttgcagttgagtgcatatatccatctacattttgctcgctggaatgctctccttgatgttttgatatggagaagaacaagctacttagcagcccatacgaatgtgctgttctccaagaggcatgtgtggctgtgcaaatgcagcctgcgacggagtgccacaacaagctctgctaaactggtttgcttggccatccatgcaatggcagcttggcgcagccagggattgctagcagcccatgtatacgacggagtacttctcatgataacaagctatattattatctcactacatcttatttcactccgcatgattattaagagtttagcttctatatattaa
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| Protein seq | MSPSSNREQSASATAALSNQCAPSPSHQFFFCGKISSHLQQQWFKATYLMAKDLLVLHRLLGFYFYQLQLSAYIHLHFARWNALLDVLIWRRTSYLAAHTNVLFSKRHVWLCKCSLRRSATTSSAKLVCLAIHAMAAWRSQGLLAAHVYDGVLLMITSYIIISLHLISLRMIIKSLASIY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0006100 | OsKeNa_10g0006100.01 | Chr10 | 10093946 | 10094938 | - | NAM | ||
| CDS seq | atgtcgccctcctctaatcgtgaacagagtgcttccgccactgccgctctttccaatcagtgcgctccctccccctcgcatcagttctttttctgcggcaagatctcatcgcatttacaacagcagtggttcaaagcaacctatctaatggcaaaagatctgctggtactccataggttgcttggattttatttctaccagttgcagttgagtgcatatatccatctacattttgctcgctggaatgctctccttgatgttttgatatggagaagaacaagctacttagcagcccatacgaatgtgctgttctccaagaggcatgtgtggctgtgcaaatgcagcctgcgacggagtgccacaacaagctctgctaaactggtttgcttggccatccatgcaatggcagcttggcgcagccagggattgctagcagcccatgtatacgacggagtacttctcatgataacaagctatattattatctcactacatcttatttcactccgcatgattattaagagtttagcttctatatattaa
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| Protein seq | MSPSSNREQSASATAALSNQCAPSPSHQFFFCGKISSHLQQQWFKATYLMAKDLLVLHRLLGFYFYQLQLSAYIHLHFARWNALLDVLIWRRTSYLAAHTNVLFSKRHVWLCKCSLRRSATTSSAKLVCLAIHAMAAWRSQGLLAAHVYDGVLLMITSYIIISLHLISLRMIIKSLASIY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0006100 | OsKeNa_10g0006100.02 | Chr10 | 10092263 | 10095142 | - | IsoSeq | ||
| CDS seq | atggactccccatgttctcctctttgtatggcgcacatattctgtcacctatataacttattctctaaacatacaagttatgtattcagctgtaatagcaattattcagttttttactttttcgagaggagtttacgaaaattgttcttggatactataacatgccaggactattttgcagtttcc |
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| Protein seq | MDSPCSPLCMAHIFCHLYNLFSKHTSYVFSCNSNYSVFYFFERSLRKLFLDTITCQDYFAVS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 10094281 | 10094478 | - | OsKeNa_10g0006100.02 | OsKeNa_10g0006100.01,OsKeNa_10g0006100.02 | All |
| A3 | Chr10 | 10094558 | 10094641 | - | OsKeNa_10g0006100.01 | OsKeNa_10g0006100.01,OsKeNa_10g0006100.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.142845 | 0.398595 | 0.936009 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0318700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0318700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006200 | RBH | 0.439065 | 1.400288 | 3.189591 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005960 | RBH | 0.0 | 0.0 | 0.884918 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006080 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006250 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0165100 | RBH | 0.038147 | 0.489067 | 0.083306 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0006390 | RBH | 0.0 | 1.802614 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
