Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0000780 | OGI:10004660 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:1405464-1408172 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtaatcatcttgaaaaggagagcattcatcagagtctccagtatcaacatacatgaaatcctcgtcatgtccgaccaggcgctggacagcataatcattacgacacagaatccgatcatttgtaagatgagaatgcttattgcggatcacctcctcgaattctttgtctccaccgtgaaaattttcgaaaccaggatgcacaaccttagctccttcaacttcacaatacaggcatcgagcatgttctgttcaaaataaaggtcagaaatttcaaatgtttgtattggcaattaatctaatattccccgcaaaaaaaaaatctaatattgatgtttgatcgatgaaaatgtagttgcaacttcgtctaataacacactaactattaagatggtccaaaatcaaccttaaataaacataacaacatttgtaaccttaaaggcccaaaactattgttcattttctacaactgcacaccatgacaccaataaccgtatataccatttcctccgtttcatattataagactttctagcattgccaacatttatatagatgttgatgaatctagacatatatatacacacatacatacattgtgttttggttaaaaactagtgggacgtttggtggcactcaacattagtgatgtttgcatatgcctttttaaaattatcgaacacatcttgatttttcttttcataactaactaagcaatgaaacaaagcaaggacaaatcacagaaaaaatcagcttacctgcacaaggtagtggaatatccactttgcaacacaagataggtggttcactctcggccttgttattgtcaaactcagcgaaaaagagcaccggcggggatggtggagatgctaacttgtatgtggccaagaagttgacatgcgtgtacctatacttgcatggtgcaacagaaaaaccgtcctctttcttggagatatactctgggccacacaccgagtagttagcgccacaaatcacatgaagcttgtacatggattcctacaaggagaatcactcatagtatgttagtatactgaataaaacggattgagattctctcccttcaaaagcaccgtgcctttatcactgacaggtgggtccatagttcatcaagcccacatgtcagtgataaaaggcacctgcctttaaagctagaggagcctgatccgagtaaatcgcatcgctaataatatcacaagttaatttgcgtatgtgtaaaattaaaatgcaaaagggacgaaccccatcatcatgcagaaagtgttgttggttcagtgcagctttcaccttcccggtgatcctcctctgctcacccatggaccgccacttcccgtcgatcaccggccagacggacgcctcgacgactggctgaggagatggcttctgctcagctagcagcacgccggcgaggtaccggacatcctccggcgagagagtcccgtctccgtccacctgcaccagcagcgacatggcggccggtgattcctgcagcttcgccttgcaggaggtgaggaatgccgcttgcaccgccgggttggggtgccacgccgccgtcgccgccgcctcgtaggcttcttgcacaccggcgcacgggctctgttgctccgccttgatcaccatggcttcgttggtggcgaacaggttgggatcagcgagggacaggtcgccgcagtacgcgaccaaacactgcacgatctcgtgctccgacagctgatggtaccggctctgcaggaaggagacgaggccgtacatggagcggctctcgatgcgggtgaggatacgcgggccgatcatgtcgagcaccggcggcggggcagccgccgggaacacggcgtcgtaccagacggtgttgaggatgatgttggagacggggtccatgggcccgtagcagtggccggccttgacgatcacctcgtggaaacgggtgcgcagctcgccggccggcagccgcgcgagcgcccgcaggtagaagccgcggaacgcgtggaggagcaccctcatcagagacgacgtgtggtggcgtggcgtgttggtgatgttgtggtaagcttgtcgcgaccccgcaaggctccaactctgctctaggtccggcgcgggtggcggctcctcgtcggcggcgagcaatgtttgaatgccttggaggttggtcggctccgccgagagcacggtgaccgcctggtggagacgtgacgacagcgacatccaggcgcggacaaggcgttcgggctcagggtggccggcgacctgcgcggcgagcctgagcgcgggctccgacgcggcggaggcgatggagaaggcggtcatgccgcgggaggcgacgatgaggcgcgcggcgacgaggaggtcggcgtcggcgaggagtaggtagcgcacggcgtcccagtcggcgaggtaggggaagaagtagagcaggaaggcgacgaggccgtcgagggatcggcgcgcgaggtcggcgtcgtcgacgggcggcgcaacctcatcggaaaggagcgtgttggcgaggatgttggagacggggtcgaggaggccgacgcagatggcggcggcggtgtggcgtgcggacgcgtggtggtagaaagattggatgttggagaggaggcgggacctctcgtcgtcttgctcaacgctcaagggcctgtagcgtgtctgcggacgaacaactcgacggaggccgcctttaccgtcgctcat
More
|
||||||||||
| CDS seq | atgagcgacggtaaaggcggcctccgtcgagttgttcgtccgcagacacgctacaggcccttgagcgttgagcaagacgacgagaggtcccgcctcctctccaacatccaatctttctaccaccacgcgtccgcacgccacaccgccgccgccatctgcgtcggcctcctcgaccccgtctccaacatcctcgccaacacgctcctttccgatgaggttgcgccgcccgtcgacgacgccgacctcgcgcgccgatccctcgacggcctcgtcgccttcctgctctacttcttcccctacctcgccgactgggacgccgtgcgctacctactcctcgccgacgccgacctcctcgtcgccgcgcgcctcatcgtcgcctcccgcggcatgaccgccttctccatcgcctccgccgcgtcggagcccgcgctcaggctcgccgcgcaggtcgccggccaccctgagcccgaacgccttgtccgcgcctggatgtcgctgtcgtcacgtctccaccaggcggtcaccgtgctctcggcggagccgaccaacctccaaggcattcaaacattgctcgccgccgacgaggagccgccacccgcgccggacctagagcagagttggagccttgcggggtcgcgacaagcttaccacaacatcaccaacacgccacgccaccacacgtcgtctctgatgagggtgctcctccacgcgttccgcggcttctacctgcgggcgctcgcgcggctgccggccggcgagctgcgcacccgtttccacgaggtgatcgtcaaggccggccactgctacgggcccatggaccccgtctccaacatcatcctcaacaccgtctggtacgacgccgtgttcccggcggctgccccgccgccggtgctcgacatgatcggcccgcgtatcctcacccgcatcgagagccgctccatgtacggcctcgtctccttcctgcagagccggtaccatcagctgtcggagcacgagatcgtgcagtgtttggtcgcgtactgcggcgacctgtccctcgctgatcccaacctgttcgccaccaacgaagccatggtgatcaaggcggagcaacagagcccgtgcgccggtgtgcaagaagcctacgaggcggcggcgacggcggcgtggcaccccaacccggcggtgcaagcggcattcctcacctcctgcaaggcgaagctgcaggaatcaccggccgccatgtcgctgctggtgcaggtggacggagacgggactctctcgccggaggatgtccggtacctcgccggcgtgctgctagctgagcagaagccatctcctcagccagtcgtcgaggcgtccgtctggccggtgatcgacgggaagtggcggtccatgggtgagcagaggaggatcaccgggaaggtgaaagctgcactgaaccaacaacactttctgcatgatgatggggttcagtatatctccaagaaagaggacggtttttctgttgcaccatgcaagtataggtacacgcatgtcaacttcttggccacatacaagttagcatctccaccatccccgccggtgctctttttcgctgagtttgacaataacaaggccgagagtgaaccacctatcttgtgttgcaaagtggatattccactaccttgtgcagaacatgctcgatgcctgtattgtgaagttgaaggagctaaggttgtgcatcctggtttcgaaaattttcacggtggagacaaagaattcgaggaggtgatccgcaataagcattctcatcttacaaatgatcggattctgtgtcgtaatgattatgctgtccagcgcctggtcggacatgacgaggatttcatgtatgttgatactggagactctgatgaatgctctccttttcaagatgattactga
More
|
||||||||||
| Protein seq | MSDGKGGLRRVVRPQTRYRPLSVEQDDERSRLLSNIQSFYHHASARHTAAAICVGLLDPVSNILANTLLSDEVAPPVDDADLARRSLDGLVAFLLYFFPYLADWDAVRYLLLADADLLVAARLIVASRGMTAFSIASAASEPALRLAAQVAGHPEPERLVRAWMSLSSRLHQAVTVLSAEPTNLQGIQTLLAADEEPPPAPDLEQSWSLAGSRQAYHNITNTPRHHTSSLMRVLLHAFRGFYLRALARLPAGELRTRFHEVIVKAGHCYGPMDPVSNIILNTVWYDAVFPAAAPPPVLDMIGPRILTRIESRSMYGLVSFLQSRYHQLSEHEIVQCLVAYCGDLSLADPNLFATNEAMVIKAEQQSPCAGVQEAYEAAATAAWHPNPAVQAAFLTSCKAKLQESPAAMSLLVQVDGDGTLSPEDVRYLAGVLLAEQKPSPQPVVEASVWPVIDGKWRSMGEQRRITGKVKAALNQQHFLHDDGVQYISKKEDGFSVAPCKYRYTHVNFLATYKLASPPSPPVLFFAEFDNNKAESEPPILCCKVDIPLPCAEHARCLYCEVEGAKVVHPGFENFHGGDKEFEEVIRNKHSHLTNDRILCRNDYAVQRLVGHDEDFMYVDTGDSDECSPFQDDY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0000780 | OsKeNa_10g0000780.01 | Chr10 | 1405464 | 1408172 | - | NAM | ||
| CDS seq | atgagcgacggtaaaggcggcctccgtcgagttgttcgtccgcagacacgctacaggcccttgagcgttgagcaagacgacgagaggtcccgcctcctctccaacatccaatctttctaccaccacgcgtccgcacgccacaccgccgccgccatctgcgtcggcctcctcgaccccgtctccaacatcctcgccaacacgctcctttccgatgaggttgcgccgcccgtcgacgacgccgacctcgcgcgccgatccctcgacggcctcgtcgccttcctgctctacttcttcccctacctcgccgactgggacgccgtgcgctacctactcctcgccgacgccgacctcctcgtcgccgcgcgcctcatcgtcgcctcccgcggcatgaccgccttctccatcgcctccgccgcgtcggagcccgcgctcaggctcgccgcgcaggtcgccggccaccctgagcccgaacgccttgtccgcgcctggatgtcgctgtcgtcacgtctccaccaggcggtcaccgtgctctcggcggagccgaccaacctccaaggcattcaaacattgctcgccgccgacgaggagccgccacccgcgccggacctagagcagagttggagccttgcggggtcgcgacaagcttaccacaacatcaccaacacgccacgccaccacacgtcgtctctgatgagggtgctcctccacgcgttccgcggcttctacctgcgggcgctcgcgcggctgccggccggcgagctgcgcacccgtttccacgaggtgatcgtcaaggccggccactgctacgggcccatggaccccgtctccaacatcatcctcaacaccgtctggtacgacgccgtgttcccggcggctgccccgccgccggtgctcgacatgatcggcccgcgtatcctcacccgcatcgagagccgctccatgtacggcctcgtctccttcctgcagagccggtaccatcagctgtcggagcacgagatcgtgcagtgtttggtcgcgtactgcggcgacctgtccctcgctgatcccaacctgttcgccaccaacgaagccatggtgatcaaggcggagcaacagagcccgtgcgccggtgtgcaagaagcctacgaggcggcggcgacggcggcgtggcaccccaacccggcggtgcaagcggcattcctcacctcctgcaaggcgaagctgcaggaatcaccggccgccatgtcgctgctggtgcaggtggacggagacgggactctctcgccggaggatgtccggtacctcgccggcgtgctgctagctgagcagaagccatctcctcagccagtcgtcgaggcgtccgtctggccggtgatcgacgggaagtggcggtccatgggtgagcagaggaggatcaccgggaaggtgaaagctgcactgaaccaacaacactttctgcatgatgatggggttcagtatatctccaagaaagaggacggtttttctgttgcaccatgcaagtataggtacacgcatgtcaacttcttggccacatacaagttagcatctccaccatccccgccggtgctctttttcgctgagtttgacaataacaaggccgagagtgaaccacctatcttgtgttgcaaagtggatattccactaccttgtgcagaacatgctcgatgcctgtattgtgaagttgaaggagctaaggttgtgcatcctggtttcgaaaattttcacggtggagacaaagaattcgaggaggtgatccgcaataagcattctcatcttacaaatgatcggattctgtgtcgtaatgattatgctgtccagcgcctggtcggacatgacgaggatttcatgtatgttgatactggagactctgatgaatgctctccttttcaagatgattactga
More
|
|||||||
| Protein seq | MSDGKGGLRRVVRPQTRYRPLSVEQDDERSRLLSNIQSFYHHASARHTAAAICVGLLDPVSNILANTLLSDEVAPPVDDADLARRSLDGLVAFLLYFFPYLADWDAVRYLLLADADLLVAARLIVASRGMTAFSIASAASEPALRLAAQVAGHPEPERLVRAWMSLSSRLHQAVTVLSAEPTNLQGIQTLLAADEEPPPAPDLEQSWSLAGSRQAYHNITNTPRHHTSSLMRVLLHAFRGFYLRALARLPAGELRTRFHEVIVKAGHCYGPMDPVSNIILNTVWYDAVFPAAAPPPVLDMIGPRILTRIESRSMYGLVSFLQSRYHQLSEHEIVQCLVAYCGDLSLADPNLFATNEAMVIKAEQQSPCAGVQEAYEAAATAAWHPNPAVQAAFLTSCKAKLQESPAAMSLLVQVDGDGTLSPEDVRYLAGVLLAEQKPSPQPVVEASVWPVIDGKWRSMGEQRRITGKVKAALNQQHFLHDDGVQYISKKEDGFSVAPCKYRYTHVNFLATYKLASPPSPPVLFFAEFDNNKAESEPPILCCKVDIPLPCAEHARCLYCEVEGAKVVHPGFENFHGGDKEFEEVIRNKHSHLTNDRILCRNDYAVQRLVGHDEDFMYVDTGDSDECSPFQDDY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.082263 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0116200 | SBH | 0.000000 | 0.592559 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g02670 | SBH | 0.000000 | 0.447780 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0116200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000780 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000810 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000780 | RBH | 0.221422 | 0.0 | 0.515244 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000720 | SBH | 0.221569 | 0.529795 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000730 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0021100 | RBH | 0.6822945 | 16.388183 | 36.7234555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000760 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0023300 | RBH | 0.2267795 | 6.818413 | 2.671441 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000740 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000660 | RBH | 0.0 | 0.0 | 0.0 |
