Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0000280 | OGI:10002080 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:476148-484305 | ||||||||
| Gene Symbol | CMT2, OsCMT2, OsCMT3a, CMT3a | ||||||||||
| DNA seq | caacatccaaacttcaactttactagttcagattgagggactaacaaataagccccgaaaaagcacaaggttgatgcaacaatgatatcaggggcagcctatacaatgtgagatgatgattgaacacaaacaatctatcaggatacagacataagatagcccatagaaggatatgaatgaatgttttggaccttatgctacaagtacaacaagcactcaagcaggagtgccaccagccttacaacattcaatcaatcaataataacattgatggtgatcacatgacagcaccaaggtggctgatcagtgattttaaacaacattctcccggatcggttcgaatcgaaccaaataatgactctactctacccaagtgttctattgctcaacaacctcgccaacagggataccaacagaggatgctcttgccggcgccgcctgtcgcccgacttccgtgaagctgtctggcaggacgaacagagggctgctcccctccgactcacgctggtatgcaagcccaagggagtaacccaatgcacgagcaacaggtacagcaactgcattgccaacttgtatatacctgcaaccgccatcaaacacagccttccagttagaacccaacatttagagttgacaccattgttgatggacggtgcaactcaatataatatgtgatgtgaaagggacaaagcttacttctctttgatagggccaaacatcttgtagtagtctgggaacccctgcaaccttgcattctcccttacggtcagaactctcgcctgattcggatgcaatataatctgcagagaagcacattcagacacgttgagaaaggatgcactgatgtagaaattgctatactttcttgacaatcggacctggttgtgtggctctgctcgggtcacaactgtaggaaccgtctcatcccaccacaagcgcccaaatggcctacaacaacatttgtaagaaatatatcgcactccaaattttactgcaggagaagaaaccagagatattgtgcaacttacttcagtgatctccctttgatgaaagacatcgcgtagtcaggaacctagccacacagacaagctagctcttcagcaattgtaacaactaggaagatagcccgcgcatctgcgcgggcatgcatcgtatattgtgttattttatacacttacaatggcggaatataaactggaaaacatttgctatgcttcaaaagcacgatttctccatttttttctattgcttacttaagcaatccccataaacattttttttataatccttgtaatcgtcttattttggacttattttgtttagaaaacatgtctaccaaatttagtgtaacagaaaagtggtgtttttttttcattttttaattgattacctatataagttgtcaatttttattaatggatggattggttgggacatgaggctctacgtagcctatggtgaatatggttggacggctaaatataattgggtaatattatttttggaatgtgatctatcatgaatacatgcttgaatatgataggtagcagaaggtggaggtggatgtgatatttttatatatatataaggtatatgtaatgattggaaataatgaatccacttgtttaagtgataaaaggatggcaagatgctttgcttttcttttctcggaatttctagaattttctctaatttattagagtgtcacgtgaccgcctaaaagtgttgtttagggtaacatggtacacagaaaataggaagaacatttggattatttgagcatattagttttttttaaaaggacaattgtccattttggcctatttcaaaacctaaataccaatctactaacgctattttttaagtttactcatttcaaaacagggtgagacggtaactctaattttgaaaagtagggtcaaatgcacaaacttgtcccttttaaaaaatacgaagtaatcatattgttttctataagtcaggcaccatttttttttaatacaatagcaactctgcatcttcatatttgagatagttctttttcataatacggtgtttatctcgttaagctatgcctatttgcaaaacaatgtataatgatgcaacctatgtttgttaaattgtttgtcccttcgaattattttttaatgtagtagcttagactattaaaatttcagctatctttttcttatgcactgaatatctagtttagttttgcatgtttgcaaaacaatatatgatggagcaacgtgccttgttgaattatttcatagtttttcaaggcaagtccaatagcatgtaaaatagcaagggtgttgtccatcgataaaaacaatgattggaacatgaatttgccaattttgtttgggtactattgatttagtatagctatcagcatttgtagactgatgtatagtaatgaaatatgtctcgacaatttatataataatccgttgctatttggatgacatgccaagtgcactggtggagtgtgcctaaatgtcatatattttatattgcaaaatacagacatgtggattttaaattgttgttttaaatataaatacagcaagagttggattagaaataatatgtgtagcttaaaactatggtcttttcaatatctataattactggttgtttctcttttacttcgatagctaaaactagagagggagggactggtgaggaataaatagtgtagtgctcgactgagagatggcaaggggtgggcactattatgcacatgtgatggactggcaggatgtgaaggtggaggactgatttgcagatatctaagtgaaaaccaatgttttttttccttagatttcaatgtttttttaacctttaagacatgatgtggtggattaagattttctgaaaatgatctaatggttaaaaataataggtatatcaatttctttttttcttttaattacttttcttaagtttaaaacgtgacatgtggtgatttaatcaatctttattatataaaataataaatattgttattttcttatgttgcgttcttacttagtttgtcatgaaagggataacggtctactttaaaaattagtagagtttgtatttttaaaataaatttaatgagttcaccggtttgaattatctttatttatatttagagtaataggttatcagatggaggaacgtacatagtcgtaccatgtacgactatgtacatccgactagggttgtttgagagtgggactggtatttgggagggattgtggttttttttccctctaaagataaatttagtcattgaaaataatgggcccaccaacttattaaaatgccacgtggcgatttaagagtgtttctaggaatactacatggcagcttatgagcgtttgtagaaagtttcatggacttttagtatataatagaagattaggaagctaggagctcctcataacaaagttcatgaaaatttagaggatgccatgctttgttactttggtttgaacctccactcctagaaattctctagctactttgtcaggccttctaatacttttaacatatttttcctaaaaatgcaatatactccctccgcttcaatcataagacactttgacttttgttaagtcaaacttctataagtgtaccaagttaatagaaaaaatatggcaactcttataacaccaaattaattccattaaatctaatatttaatatattttgatagtatatttgtttagtatcaaaaatattgctacgtttcttctataaacttggtcaattttaaaaaaaattgacttagaaaaaaaATaaaggtgccttacaatacaaaacaaagggagcataattcaaaagggctaatcagcacctagggcgcctgtaaatttgtccccacaaagtaatagatgcatcgcaactgtaaacgtgttcccctgaatataaatacatccccttgtgactgcaaacagcatggcactagctgcgtactaagcagcagatactagatgcagcaaacaattcacaacaatggggagagcacggaacacttaccaaaggcttgccagaagataaatatacacggggaacgtctggatcccactccacgatgttgtttgccccaaccctgacacccttcaggtcccggaagttggctccctgaaacacagtaaattgattatgactgcagaaagaatgagtggacaagttcacaaaggaccaaagctgtacaactgccaaccttctttactggaatttgctgcacacgctcatggtcatccttatttagctttaagggctggtgatccaaaagcttgcctagatctggaccatccttcccttcaaaagaactatccagcatttctagaacatttggggaaaaatgaattaaacttggtgtacagggtgaaatgtaagggaaaaaatcattgataacaaaaataaacccacccatcatattcaaagcacacaaatgatagctattagaggttgttttattacctttacggctaagccggatatagcgctggaattctgttttgggggaagaaccatattccatcacttcattaggctgatggttgtttacctgcagataaggggtaagattgcagttgcaggtcaagaaacgtattaatagatgatgaaacacttgcctctggcaaatccgaaattgcatcgccaagcagcagtgcatttttcaatgttggcttctgtgtttcatcgtatgcaacaatactttgctgcaagcaagatcaagctagtcagaatacggagactttcaatggaatttagagttatggtcagacttacagaaaaagcatttggggcaccaccacggacaacaacattatgagtgggaagcggatactttggcagcacctacattaacaaatgcacctggtcactgttccgatcaaacactaccaaatgttcacaaatgcaatggaaacaaaccatggtaggaagagctccccagaggaacacacgcatcctaaattgtggcaagccataacaacctgcaaccatcattccaagtcgtgcttggtacttcatagccaccagacggctcaaggcataacgtccaaggtaaccatctgcaaacttcagtatgtctacaacattttccatcaggacatacttaggcttcaggtatgccacaatatccatgaatgtcaccatctgtttgtttttctcgtcttttagtggctctttgcggtttctgaaccgattgaaaccacttattccttggcatggtggcccaccacaaatgacatcaacatcaccctatggaattattaaacatagatggcatcagcagatcaaagtatatagcagaaaagagcataaaaggaaagcaaatactcaccggaagaggcaagatttttctcctgtatccttcttgcacaaattctttaattttcaatgggcaatccctaggttattaaaaaatagactaggttatttcaaacagaaataaaccgtgttaatgattatatgccagccagaaaggtaccaacctgaggttctcaataggctcccaagtgtcctcttcacggccatagcctttccattgtacctgttaaaagaattatgttgaagcaacactcacagaatactgcaggaacccataaataatatgcaaatgatgagacaagggtaccttgaaatagaggccatcttctctaccactgccaccgtagcagattccagctagtttctccacaacaaactcatccttctcaagaggctcatcatcatcctcttcgttctctgaggcaccagctgaactgaaatcaatatctttcttgacatattcatcacaaaggctatgccatcccttaagaagagcaagaaactcatccgccttttcattccggacctgcattcaggaaaaaaaaggtactagcattaccaaatggtttcttcacagtatgccaaatttgattacacaatccatagcacgttgatccaatgattagctcgttagagttagcagatcataaaacaacactgaaaacaaatagatcaatgcagttcacaacatacctcagttcttggatgattatacttgagactctcgcacgcaaaactattgaaatcaacagcccatcgctggccacatagcagaaaaaaaaagggtttagtactgatatcgcaaaagttctcccagacgaatgagggaagaataataccgtttcaagattgagtccagcaagtgccgcacccaaacagagcccggtagacataccgccacaaccagagtacagatcaaggagtgtagcctttcccactgaagatgcctctgaatcagagacaactttgcctttggaagaatccacatcatcagaagaaatatctgatgcagtgtcactgcctgatgctccattttctaggtggaagtaatatgagttagtgcttctatttgaaacagttcacaaatatatattgggcaatatatatagaggtcatcttaattcagctagcaacaagaacagagcaatttaccaagtgggatattagcaaatgttgaataagcaacggtgtatgacatgtcatagtacagatcacaatcagccaaccgtcgagctttggcttctgattccatctaaacgaaatgaaggggaaaatcacaatgtggaacattacaagcatgaggtagcacaagattctgagagagaccacttacatttggatcaatatgcacgattttaacctttgaaatgatgcaatcaagcacattgtcattcttttcttcagaaagaaaaacacgcttgagatcatgcttttcatcatcagcattctccatcattatggatgagatgaccttcaaagatagttcccagatgtgtacgttgttagagtttggacatacacacacacacacaccaaaaaaaaaagaaaggaaagcatactctagtagagtttgatacacaccgtatcctccgcccgaaagaaccaacggcaggtaaaatagcggcagtggtcagtcccctcaaagaactcagtaattctaccgatgtagtcggccttatcttcctcagcctatgattgttgcaaacgaaatggagatgtactactttagagaaaaagtaatttcatcgagcaaggccacataattgtgattatttgacaaatacacaagcacgaaaaaggagtatatgcaaagactgaattgtgactgacaggatattcagttaacaatcagatataagtggaaatgtggggcattccatacaattgataattgaaaggagcatccttgtttgatgcaacaaaaatcacacacaacgaaagaaatcagggtgaggcggatgtgttagagatccagatgagctagttaagtgggacacaattaatgacaagcaagtcgcaataaattaaagcatagacacgaagcatggcaagacgtaataaaggaaggaaggaaggaaggaaattgagatggggtggtgaaccttgacatagacgtcgtcgtggaggcagtagagcgtgccatcgaccttggcggagctgtagtggcagcgcgccttgatgtcctcctcctcatcgggcctgccaccaacccagaggacgcgttgagaggaggatgcaaacgtggtgaggaggccagatctgggatgcgtgagtggtatacctcctggtggcggcgttgcgctggtagcgctgcggccacttgtcgcgcgcctccttggcggggaaggggtcgccgacgaactccgggtcgtggtcgccgtcactgccgtgtcggaccctgctgggctgcgccacccgcttcctcgccacaccgggggagggggcgtccagctgcttctgctccgcctccgcctcctcggcctcggcttcctcccccaaggccatctcctccgcatccggctcctccccgcaggcgtcgtcctccatgggcggcttctcctcctcctttacctcgtccttcttcttcctgggcttggtctccgccttgggcctgcgggtgcgcttggtggagggctcgtcggtggccttggcggaggcggaggcggaggcggcgcgcttacgcgtggaggtacgcgtgggcgcggcggcggaggacggggaactgggcgccatggctgctgctgcctcttcctcttgctagggttttggatgggtttaggaggaggagaacctggagaagaggaaatggagagaagaagaaatc
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| CDS seq | atggcgcccagttccccgtcctccgccgccgcgcccacgcgtacctccacgcgtaagcgcgccgcctccgcctccgcctccgccaaggccaccgacgagccctccaccaagcgcacccgcaggcccaaggcggagaccaagcccaggaagaagaaggacgaggtaaaggaggaggagaagccgcccatggaggacgacgcctgcggggaggagccggatgcggaggagatggccttgggggaggaagccgaggccgaggaggcggaggcggagcagaagcagctggacgccccctcccccggtgtggcgaggaagcgggtggcgcagcccagcagggtccgacacggcagtgacggcgaccacgacccggagttcgtcggcgaccccttccccgccaaggaggcgcgcgacaagtggccgcagcgctaccagcgcaacgccgccaccaggaggcccgatgaggaggaggacatcaaggcgcgctgccactacagctccgccaaggtcgatggcacgctctactgcctccacgacgacgtctatgtcaaggctgaggaagataaggccgactacatcggtagaattactgagttctttgaggggactgaccactgccgctattttacctgccgttggttctttcgggcggaggatacggtcatctcatccataatgatggagaatgctgatgatgaaaagcatgatctcaagcgtgtttttctttctgaagaaaagaatgacaatgtgcttgattgcatcatttcaaaggttaaaatcgtgcatattgatccaaatatggaatcagaagccaaagctcgacggttggctgattgtgatctgtactatgacatgtcatacaccgttgcttattcaacatttgctaatatcccacttgaaaatggagcatcaggcagtgacactgcatcagatatttcttctgatgatgtggattcttccaaaggcaaagttgtctctgattcagaggcatcttcagtgggaaaggctacactccttgatctgtactctggttgtggcggtatgtctaccgggctctgtttgggtgcggcacttgctggactcaatcttgaaacgcgatgggctgttgatttcaatagttttgcgtgcgagagtctcaagtataatcatccaagaactgaggtccggaatgaaaaggcggatgagtttcttgctcttcttaagggatggcatagcctttgtgatgaatatgtcaagaaagatattgatttcagttcagctggtgcctcagagaacgaagaggatgatgatgagcctcttgagaaggatgagtttgttgtggagaaactagctggaatctgctacggtggcagtggtagagaagatggcctctatttcaaggtacaatggaaaggctatggccgtgaagaggacacttgggagcctattgagaacctcagggattgcccattgaaaattaaagaatttgtgcaagaaggatacaggagaaaaatcttgcctcttccgggtgatgttgatgtcatttgtggtgggccaccatgccaaggaataagtggtttcaatcggttcagaaaccgcaaagagccactaaaagacgagaaaaacaaacagatggtgacattcatggatattgtggcatacctgaagcctaagtatgtcctgatggaaaatgttgtagacatactgaagtttgcagatggttaccttggacgttatgccttgagccgtctggtggctatgaagtaccaagcacgacttggaatgatggttgcaggttgttatggcttgccacaatttaggatgcgtgtgttcctctggggagctcttcctaccatggtgctgccaaagtatccgcttcccactcataatgttgttgtccgtggtggtgccccaaatgctttttctcaaagtattgttgcatacgatgaaacacagaagccaacattgaaaaatgcactgctgcttggcgatgcaatttcggatttgccagaggtaaacaaccatcagcctaatgaagtgatggaatatggttcttcccccaaaacagaattccagcgctatatccggcttagccgtaaagaaatgctggatagttcttttgaagggaaggatggtccagatctaggcaagcttttggatcaccagcccttaaagctaaataaggatgaccatgagcgtgtgcagcaaattccagtaaagaagggagccaacttccgggacctgaagggtgtcagggttggggcaaacaacatcgtggagtgggatccagacgttccccgtgtatatttatcttctggcaagcctttggtaagtgttccgccatttgggcgcttgtggtgggatgagacggttcctacagttgtgacccgagcagagccacacaaccagattatattgcatccgaatcaggcgagagttctgaccgtaagggagaatgcaaggttgcaggggttcccagactactacaagatgtttggccctatcaaagagaagtatatacaagttggcaatgcagttgctgtacctgttgctcgtgcattgggttactcccttgggcttgcataccagcgtgagtcggaggggagcagccctctgttcgtcctgccagacagcttcacggaagtcgggcgacaggcggcgccggcaagagcatcctctgttggtatccctgttggcgaggttgttgagcaatag
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| Protein seq | MAPSSPSSAAAPTRTSTRKRAASASASAKATDEPSTKRTRRPKAETKPRKKKDEVKEEEKPPMEDDACGEEPDAEEMALGEEAEAEEAEAEQKQLDAPSPGVARKRVAQPSRVRHGSDGDHDPEFVGDPFPAKEARDKWPQRYQRNAATRRPDEEEDIKARCHYSSAKVDGTLYCLHDDVYVKAEEDKADYIGRITEFFEGTDHCRYFTCRWFFRAEDTVISSIMMENADDEKHDLKRVFLSEEKNDNVLDCIISKVKIVHIDPNMESEAKARRLADCDLYYDMSYTVAYSTFANIPLENGASGSDTASDISSDDVDSSKGKVVSDSEASSVGKATLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRTEVRNEKADEFLALLKGWHSLCDEYVKKDIDFSSAGASENEEDDDEPLEKDEFVVEKLAGICYGGSGREDGLYFKVQWKGYGREEDTWEPIENLRDCPLKIKEFVQEGYRRKILPLPGDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTHNVVVRGGAPNAFSQSIVAYDETQKPTLKNALLLGDAISDLPEVNNHQPNEVMEYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKGANFRDLKGVRVGANNIVEWDPDVPRVYLSSGKPLVSVPPFGRLWWDETVPTVVTRAEPHNQIILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQVGNAVAVPVARALGYSLGLAYQRESEGSSPLFVLPDSFTEVGRQAAPARASSVGIPVGEVVEQ |
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| Function | DNA (cytosine-5)-methyltransferase CMT3 [UniProtKB/Swiss-Prot:C0SQ89] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0000280 | OsKeNa_10g0000280.01 | Chr10 | 476284 | 484305 | - | NAM | ||
| CDS seq | atggcgcccagttccccgtcctccgccgccgcgcccacgcgtacctccacgcgtaagcgcgccgcctccgcctccgcctccgccaaggccaccgacgagccctccaccaagcgcacccgcaggcccaaggcggagaccaagcccaggaagaagaaggacgaggtaaaggaggaggagaagccgcccatggaggacgacgcctgcggggaggagccggatgcggaggagatggccttgggggaggaagccgaggccgaggaggcggaggcggagcagaagcagctggacgccccctcccccggtgtggcgaggaagcgggtggcgcagcccagcagggtccgacacggcagtgacggcgaccacgacccggagttcgtcggcgaccccttccccgccaaggaggcgcgcgacaagtggccgcagcgctaccagcgcaacgccgccaccaggaggcccgatgaggaggaggacatcaaggcgcgctgccactacagctccgccaaggtcgatggcacgctctactgcctccacgacgacgtctatgtcaaggctgaggaagataaggccgactacatcggtagaattactgagttctttgaggggactgaccactgccgctattttacctgccgttggttctttcgggcggaggatacggtcatctcatccataatgatggagaatgctgatgatgaaaagcatgatctcaagcgtgtttttctttctgaagaaaagaatgacaatgtgcttgattgcatcatttcaaaggttaaaatcgtgcatattgatccaaatatggaatcagaagccaaagctcgacggttggctgattgtgatctgtactatgacatgtcatacaccgttgcttattcaacatttgctaatatcccacttgaaaatggagcatcaggcagtgacactgcatcagatatttcttctgatgatgtggattcttccaaaggcaaagttgtctctgattcagaggcatcttcagtgggaaaggctacactccttgatctgtactctggttgtggcggtatgtctaccgggctctgtttgggtgcggcacttgctggactcaatcttgaaacgcgatgggctgttgatttcaatagttttgcgtgcgagagtctcaagtataatcatccaagaactgaggtccggaatgaaaaggcggatgagtttcttgctcttcttaagggatggcatagcctttgtgatgaatatgtcaagaaagatattgatttcagttcagctggtgcctcagagaacgaagaggatgatgatgagcctcttgagaaggatgagtttgttgtggagaaactagctggaatctgctacggtggcagtggtagagaagatggcctctatttcaaggtacaatggaaaggctatggccgtgaagaggacacttgggagcctattgagaacctcagggattgcccattgaaaattaaagaatttgtgcaagaaggatacaggagaaaaatcttgcctcttccgggtgatgttgatgtcatttgtggtgggccaccatgccaaggaataagtggtttcaatcggttcagaaaccgcaaagagccactaaaagacgagaaaaacaaacagatggtgacattcatggatattgtggcatacctgaagcctaagtatgtcctgatggaaaatgttgtagacatactgaagtttgcagatggttaccttggacgttatgccttgagccgtctggtggctatgaagtaccaagcacgacttggaatgatggttgcaggttgttatggcttgccacaatttaggatgcgtgtgttcctctggggagctcttcctaccatggtgctgccaaagtatccgcttcccactcataatgttgttgtccgtggtggtgccccaaatgctttttctcaaagtattgttgcatacgatgaaacacagaagccaacattgaaaaatgcactgctgcttggcgatgcaatttcggatttgccagaggtaaacaaccatcagcctaatgaagtgatggaatatggttcttcccccaaaacagaattccagcgctatatccggcttagccgtaaagaaatgctggatagttcttttgaagggaaggatggtccagatctaggcaagcttttggatcaccagcccttaaagctaaataaggatgaccatgagcgtgtgcagcaaattccagtaaagaagggagccaacttccgggacctgaagggtgtcagggttggggcaaacaacatcgtggagtgggatccagacgttccccgtgtatatttatcttctggcaagcctttggtaagtgttccgccatttgggcgcttgtggtgggatgagacggttcctacagttgtgacccgagcagagccacacaaccagattatattgcatccgaatcaggcgagagttctgaccgtaagggagaatgcaaggttgcaggggttcccagactactacaagatgtttggccctatcaaagagaagtatatacaagttggcaatgcagttgctgtacctgttgctcgtgcattgggttactcccttgggcttgcataccagcgtgagtcggaggggagcagccctctgttcgtcctgccagacagcttcacggaagtcgggcgacaggcggcgccggcaagagcatcctctgttggtatccctgttggcgaggttgttgagcaatag
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| Protein seq | MAPSSPSSAAAPTRTSTRKRAASASASAKATDEPSTKRTRRPKAETKPRKKKDEVKEEEKPPMEDDACGEEPDAEEMALGEEAEAEEAEAEQKQLDAPSPGVARKRVAQPSRVRHGSDGDHDPEFVGDPFPAKEARDKWPQRYQRNAATRRPDEEEDIKARCHYSSAKVDGTLYCLHDDVYVKAEEDKADYIGRITEFFEGTDHCRYFTCRWFFRAEDTVISSIMMENADDEKHDLKRVFLSEEKNDNVLDCIISKVKIVHIDPNMESEAKARRLADCDLYYDMSYTVAYSTFANIPLENGASGSDTASDISSDDVDSSKGKVVSDSEASSVGKATLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRTEVRNEKADEFLALLKGWHSLCDEYVKKDIDFSSAGASENEEDDDEPLEKDEFVVEKLAGICYGGSGREDGLYFKVQWKGYGREEDTWEPIENLRDCPLKIKEFVQEGYRRKILPLPGDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTHNVVVRGGAPNAFSQSIVAYDETQKPTLKNALLLGDAISDLPEVNNHQPNEVMEYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKGANFRDLKGVRVGANNIVEWDPDVPRVYLSSGKPLVSVPPFGRLWWDETVPTVVTRAEPHNQIILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQVGNAVAVPVARALGYSLGLAYQRESEGSSPLFVLPDSFTEVGRQAAPARASSVGIPVGEVVEQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0000280 | OsKeNa_10g0000280.02 | Chr10 | 476148 | 476727 | - | IsoSeq | ||
| CDS seq | atgcagttgctgtacctgttgctcgtgcattgggttactcccttgggcttgcataccagcgtgagtcggaggggagcagccctctgttcgtcctgccagacagcttcacggaagtcgggcgacaggcggcgccggcaagagcatcctctgttggtatccctgttggcgaggttgttgagcaatagaacactt |
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| Protein seq | MQLLYLLLVHWVTPLGLHTSVSRRGAALCSSCQTASRKSGDRRRRQEHPLLVSLLARLLSNRTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.941883 | 1.130164 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0104900 | RBH | 0.0 | 0.0 | 2.069103 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g01570 | RBH | 0.0 | 0.0 | 0.497478 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0104900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000270 | RBH | 0.0 | 9.518168 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000260 | RBH | 0.0 | 11.200181 | 1.572535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000290 | RBH | 0.0 | 0.537344 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000230 | RBH | 0.0 | 11.877234 | 0.692244 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0008500 | RBH | 7.5823975 | 3.3584665 | 5.792862 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000260 | RBH | 0.0 | 0.715215 | 0.131677 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0007500 | RBH | 7.784927 | 0.229576 | 38.1756385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000250 | RBH | 0.0 | 0.217051 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000260 | RBH | 0.0 | 13.976293 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000220 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000240 | RBH | 0.0 | 4.897827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000280 | RBH | 0.0 | 5.719424 | 1.227281 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000280 | RBH | 0.0 | 9.370144 | 0.746352 |
