Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0019030 | OGI:09063910 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:22354276-22358194 | ||||||||
| Gene Symbol | SDRLK-43, SDRLP-2, SDK11, SDK1 | ||||||||||
| DNA seq | atggatcgatcagatgctttcatctacgtcatcatcatgagcgtcgtcgtcgtcctcctgccgccgccgtgttcagccgacgaccggcttgtccccggtaagccgctaacctctgatgccaccgtcgtctccgacggcggcgccttcgccatgggcttcttctccccctccaactccaccccggccaagctctacctcggtatatggtacaacgacatcccccggcgcacggtggtgtgggtcgccgaccgagaaactccggtcacaaatggcacaacgctgtccctgaccgaatcctccaacctcgtcgtgtccgacgctgacggccgcgtccgctggacgaccaacatcaccggtggcgccgccggcaacggcaacacgaccgcggtgctgatgaacaccggcaacctcgtcgtccggtcaccgaacggcaccatcttttggcagagcttcgagcagccgaccgactcgttcctgcccgggatgaagctgcggatgatgtacaggacgcgcgcctccgaccggctggtgtcgtggaggggccccggcgacccgtcgccggggagcttctcgtacggcggcgacacggacacgttcctccaggtgatcatgtggaacgggacgcggccgttgatgcgggacgggccgtggacaggctacatggtggatagccagtaccagacgaacaccagcgccattgtctacgtcgcgatcatcgacaccgacgaggagatatacatcacgttcagcgtcgctgacgacgccccgcacaccaggttcgtgctgacctacgccggcaagtaccagcttcagaggtggagcagcggatcgtcggcgtgggtggtgctccaggagtggccggccgggtgcgacccctacgacttctgcggcccgaacgggtactgcgacagcacggcggcggaggcgcctctcccggcgtgcaggtgcctcgacggcttcgagccggcgagcgcggcggagtggagcagcggccggttctcgcggggttgccggcggaaggaggcggtgcggtgcggcgacggcttcttggccgtgcaggggatgcagtgccccgacaagttcgtgcacgtcccgaacaggacgctggaggcgtgcgccgcggagtgcagcagcaactgctcgtgcgtggcgtacgcgtacgccaacctgagcaacagcaggtccaggggcgacacgacgaggtgcttggtgtggtcaggggagctgattgacatggcaaaagttggtgcacaagggctgggcagcgatacgctctacctcaggcttgcaggccttcagcttcatgcgggtaaacacaccgttaatttttagtacattttttctaaaatcaattactacatccgttgttgttcataggacgtaggagtactttgatgtctaaaagtcaaattctctatagattttgatcagttggtataaaaattcctctatgatgagtctaccaagaaattcatgttttagactaacaaggtaatccattcatgttttagactaacaaggtaatccctccgtctcacagaaagagcaatcctagaatcccaatgcaaatttagtgaagagtaaagatgaccaaaatgcccctcgttattgaaaaaagtagtaatattgataggtaggtaaagggtatttaagagataaaactttctcgttttacgtgctgagagtaggtagaatggcagaagttggTtttttttttgacaaaattcaatctccataagttgagtttttttggggacggatggagtaggtcttatagctatctaaaatatattattatacgataataaatgaatggttaaagtttagtcttaagtactttttgaaagtcctatacaaatcaacagaaaaatattatatttctattccacctccaataatatttattttttttttgaaaaaactacttaaacactaaaactttgcacaggtggaaggacgaagagcaatgcagtcaagattgtgcttccagtgttagcaagtagtattctggtaattctatgcatttcttttgcatggttaaaaatgaaaggtatatttagtgtttttttctcttgtaaacatatgttattcttaaaagctgatgactataattaagattgatcttgttcagcatgcaagaaaagaaatcgagaaaagcacagaaagcaaattttgtttggcatgagtgcagctgaagaggttggggaaggaaatcctgtccaagatcttgaattcccatttgtaacatttgaggatattgctctagcaactaacaacttttcggaagcatacaaaattggtcagggaggttttggaaaagtctacaaggtaaatcattcggtagtagcttccttttatatgttctaggttattcaataatttattttgtatgtcatatgctcaaatctaatttcttttctcacaatttaaagggaatgctaGggggtcaggaagtcgctattaaaaggttaagcaggaattctcaacaaggaacgaaggaattcaggaacgaagttattcttattgcgaaattacaacatagaaatttggttcgcatacttggtttttgtgttgagggagatgaaaagctactaatttatgagtatttgcctaacaaaagcttagatgcaacacttttcagtaagttatggtgacgcatcttgcataagttttaaagcatctaaacaataatagaatgcttacatttgttttcaaatacagatggttcaagaaaattgttgctagattggacaacacggtttaatataatcaaaggagtggcaaggggacttctttatctacatcaagactcaagattaaccataattcacagagatctcaaagccggtaatattttgctagatgcagagatgaaacctaagatagcagattttggcatggcaaggatctttggtgataatcaacagaatgcaaatacccaacgtgttgttggaacatagtaagtagttatttgcattaattgattaaattgagtttgattgagttaagtcttctccagtaactcttacatgtgaaatggtaacagtggttatatggctcctgagtatgcaatggaaggtatcttttctactaaatcagatgtctacagctttggtgtgttattgttggaagttataaccggtatgaggagaaattccgttagcaacatcatgggctttccaaacctaatagtctatgtgagtatacgtcttttctgaagttctaatatattattattattattattattattattattattattattattattattattattattattattattattattattattattattttattattattattattatttattatttacgttgcttcggaaggtatcgatggacataacattttctaatgtgaattgggtacttgttgttacctacttagtaagcaaataggaggtgacaaaaattaacactatatttttgtaccttcagtatcttattaaaaaccataaagtaacttttaaattaaaactagtgaactttgaattttattaaaggttcagcgggactaaaatggtctgggattttgaaaaatttcgagttctacaatccaaatgatacttttgattgttcaggcatggaatatgtggaaggaagggaagaccgaggatttggcagactcatcaattatggatagttgcttacaagatgaagttttactttgcatccatttagctttattgtgtgttcaagaaaacccagatgacaggccacttatgccatttgttgtgttcatcctagagaatggaagtagtactgcactgccaaccccaagtcgccctacctactttgcgcagaggagtgataaaatggaaatggatcaattgagacataatattgaaaattcaatgtatactctcacgttaacagatgtagaggggcggtag
More
|
||||||||||
| CDS seq | atggatcgatcagatgctttcatctacgtcatcatcatgagcgtcgtcgtcgtcctcctgccgccgccgtgttcagccgacgaccggcttgtccccggtaagccgctaacctctgatgccaccgtcgtctccgacggcggcgccttcgccatgggcttcttctccccctccaactccaccccggccaagctctacctcggtatatggtacaacgacatcccccggcgcacggtggtgtgggtcgccgaccgagaaactccggtcacaaatggcacaacgctgtccctgaccgaatcctccaacctcgtcgtgtccgacgctgacggccgcgtccgctggacgaccaacatcaccggtggcgccgccggcaacggcaacacgaccgcggtgctgatgaacaccggcaacctcgtcgtccggtcaccgaacggcaccatcttttggcagagcttcgagcagccgaccgactcgttcctgcccgggatgaagctgcggatgatgtacaggacgcgcgcctccgaccggctggtgtcgtggaggggccccggcgacccgtcgccggggagcttctcgtacggcggcgacacggacacgttcctccaggtgatcatgtggaacgggacgcggccgttgatgcgggacgggccgtggacaggctacatggtggatagccagtaccagacgaacaccagcgccattgtctacgtcgcgatcatcgacaccgacgaggagatatacatcacgttcagcgtcgctgacgacgccccgcacaccaggttcgtgctgacctacgccggcaagtaccagcttcagaggtggagcagcggatcgtcggcgtgggtggtgctccaggagtggccggccgggtgcgacccctacgacttctgcggcccgaacgggtactgcgacagcacggcggcggaggcgcctctcccggcgtgcaggtgcctcgacggcttcgagccggcgagcgcggcggagtggagcagcggccggttctcgcggggttgccggcggaaggaggcggtgcggtgcggcgacggcttcttggccgtgcaggggatgcagtgccccgacaagttcgtgcacgtcccgaacaggacgctggaggcgtgcgccgcggagtgcagcagcaactgctcgtgcgtggcgtacgcgtacgccaacctgagcaacagcaggtccaggggcgacacgacgaggtgcttggtgtggtcaggggagctgattgacatggcaaaagttggtgcacaagggctgggcagcgatacgctctacctcaggcttgcaggccttcagcttcatgcggcatgcaagaaaagaaatcgagaaaagcacagaaagcaaattttgtttggcatgagtgcagctgaagaggttggggaaggaaatcctgtccaagatcttgaattcccatttgtaacatttgaggatattgctctagcaactaacaacttttcggaagcatacaaaattggtcagggaggttttggaaaagtctacaagggaatgctaGggggtcaggaagtcgctattaaaaggttaagcaggaattctcaacaaggaacgaaggaattcaggaacgaagttattcttattgcgaaattacaacatagaaatttggttcgcatacttggtttttgtgttgagggagatgaaaagctactaatttatgagtatttgcctaacaaaagcttagatgcaacacttttcatggttatatggctcctgagtatgcaatggaaggcatggaatatgtggaaggaagggaagaccgaggatttggcagactcatcaattatggatagttgcttacaagatgaagttttactttgcatccatttagctttattgtgtgttcaagaaaacccagatgacaggccacttatgccatttgttgtgttcatcctagagaatggaagtagtactgcactgccaaccccaagtcgccctacctactttgcgcagaggagtgataaaatggaaatggatcaattgagacataatattgaaaattcaatgtatactctcacgttaacagatgtagaggggcggtag
More
|
||||||||||
| Protein seq | MDRSDAFIYVIIMSVVVVLLPPPCSADDRLVPGKPLTSDATVVSDGGAFAMGFFSPSNSTPAKLYLGIWYNDIPRRTVVWVADRETPVTNGTTLSLTESSNLVVSDADGRVRWTTNITGGAAGNGNTTAVLMNTGNLVVRSPNGTIFWQSFEQPTDSFLPGMKLRMMYRTRASDRLVSWRGPGDPSPGSFSYGGDTDTFLQVIMWNGTRPLMRDGPWTGYMVDSQYQTNTSAIVYVAIIDTDEEIYITFSVADDAPHTRFVLTYAGKYQLQRWSSGSSAWVVLQEWPAGCDPYDFCGPNGYCDSTAAEAPLPACRCLDGFEPASAAEWSSGRFSRGCRRKEAVRCGDGFLAVQGMQCPDKFVHVPNRTLEACAAECSSNCSCVAYAYANLSNSRSRGDTTRCLVWSGELIDMAKVGAQGLGSDTLYLRLAGLQLHAACKKRNREKHRKQILFGMSAAEEVGEGNPVQDLEFPFVTFEDIALATNNFSEAYKIGQGGFGKVYKGMLGGQEVAIKRLSRNSQQGTKEFRNEVILIAKLQHRNLVRILGFCVEGDEKLLIYEYLPNKSLDATLFMVIWLLSMQWKAWNMWKEGKTEDLADSSIMDSCLQDEVLLCIHLALLCVQENPDDRPLMPFVVFILENGSSTALPTPSRPTYFAQRSDKMEMDQLRHNIENSMYTLTLTDVEGR |
||||||||||
| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0019030 | OsKeNa_09g0019030.01 | Chr09 | 22354276 | 22358194 | + | NAM | ||
| CDS seq | atggatcgatcagatgctttcatctacgtcatcatcatgagcgtcgtcgtcgtcctcctgccgccgccgtgttcagccgacgaccggcttgtccccggtaagccgctaacctctgatgccaccgtcgtctccgacggcggcgccttcgccatgggcttcttctccccctccaactccaccccggccaagctctacctcggtatatggtacaacgacatcccccggcgcacggtggtgtgggtcgccgaccgagaaactccggtcacaaatggcacaacgctgtccctgaccgaatcctccaacctcgtcgtgtccgacgctgacggccgcgtccgctggacgaccaacatcaccggtggcgccgccggcaacggcaacacgaccgcggtgctgatgaacaccggcaacctcgtcgtccggtcaccgaacggcaccatcttttggcagagcttcgagcagccgaccgactcgttcctgcccgggatgaagctgcggatgatgtacaggacgcgcgcctccgaccggctggtgtcgtggaggggccccggcgacccgtcgccggggagcttctcgtacggcggcgacacggacacgttcctccaggtgatcatgtggaacgggacgcggccgttgatgcgggacgggccgtggacaggctacatggtggatagccagtaccagacgaacaccagcgccattgtctacgtcgcgatcatcgacaccgacgaggagatatacatcacgttcagcgtcgctgacgacgccccgcacaccaggttcgtgctgacctacgccggcaagtaccagcttcagaggtggagcagcggatcgtcggcgtgggtggtgctccaggagtggccggccgggtgcgacccctacgacttctgcggcccgaacgggtactgcgacagcacggcggcggaggcgcctctcccggcgtgcaggtgcctcgacggcttcgagccggcgagcgcggcggagtggagcagcggccggttctcgcggggttgccggcggaaggaggcggtgcggtgcggcgacggcttcttggccgtgcaggggatgcagtgccccgacaagttcgtgcacgtcccgaacaggacgctggaggcgtgcgccgcggagtgcagcagcaactgctcgtgcgtggcgtacgcgtacgccaacctgagcaacagcaggtccaggggcgacacgacgaggtgcttggtgtggtcaggggagctgattgacatggcaaaagttggtgcacaagggctgggcagcgatacgctctacctcaggcttgcaggccttcagcttcatgcggcatgcaagaaaagaaatcgagaaaagcacagaaagcaaattttgtttggcatgagtgcagctgaagaggttggggaaggaaatcctgtccaagatcttgaattcccatttgtaacatttgaggatattgctctagcaactaacaacttttcggaagcatacaaaattggtcagggaggttttggaaaagtctacaagggaatgctaGggggtcaggaagtcgctattaaaaggttaagcaggaattctcaacaaggaacgaaggaattcaggaacgaagttattcttattgcgaaattacaacatagaaatttggttcgcatacttggtttttgtgttgagggagatgaaaagctactaatttatgagtatttgcctaacaaaagcttagatgcaacacttttcatggttatatggctcctgagtatgcaatggaaggcatggaatatgtggaaggaagggaagaccgaggatttggcagactcatcaattatggatagttgcttacaagatgaagttttactttgcatccatttagctttattgtgtgttcaagaaaacccagatgacaggccacttatgccatttgttgtgttcatcctagagaatggaagtagtactgcactgccaaccccaagtcgccctacctactttgcgcagaggagtgataaaatggaaatggatcaattgagacataatattgaaaattcaatgtatactctcacgttaacagatgtagaggggcggtag
More
|
|||||||
| Protein seq | MDRSDAFIYVIIMSVVVVLLPPPCSADDRLVPGKPLTSDATVVSDGGAFAMGFFSPSNSTPAKLYLGIWYNDIPRRTVVWVADRETPVTNGTTLSLTESSNLVVSDADGRVRWTTNITGGAAGNGNTTAVLMNTGNLVVRSPNGTIFWQSFEQPTDSFLPGMKLRMMYRTRASDRLVSWRGPGDPSPGSFSYGGDTDTFLQVIMWNGTRPLMRDGPWTGYMVDSQYQTNTSAIVYVAIIDTDEEIYITFSVADDAPHTRFVLTYAGKYQLQRWSSGSSAWVVLQEWPAGCDPYDFCGPNGYCDSTAAEAPLPACRCLDGFEPASAAEWSSGRFSRGCRRKEAVRCGDGFLAVQGMQCPDKFVHVPNRTLEACAAECSSNCSCVAYAYANLSNSRSRGDTTRCLVWSGELIDMAKVGAQGLGSDTLYLRLAGLQLHAACKKRNREKHRKQILFGMSAAEEVGEGNPVQDLEFPFVTFEDIALATNNFSEAYKIGQGGFGKVYKGMLGGQEVAIKRLSRNSQQGTKEFRNEVILIAKLQHRNLVRILGFCVEGDEKLLIYEYLPNKSLDATLFMVIWLLSMQWKAWNMWKEGKTEDLADSSIMDSCLQDEVLLCIHLALLCVQENPDDRPLMPFVVFILENGSSTALPTPSRPTYFAQRSDKMEMDQLRHNIENSMYTLTLTDVEGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.309023 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0551400 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g37840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0551400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018910 | RBH | 0.0 | 0.534828 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019000 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019200 | RBH | 0.0 | 0.227198 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018960 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0019180 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0369800 | SBH | 0.018808 | 0.0091025 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018950 | SBH | 0.010633 | 0.017628 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0355500 | SBH | 0.0280205 | 0.024872 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0019050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018770 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018790 | SBH | 0.017858 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018930 | SBH | 0.0 | 0.150885 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G019340 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0019160 | SBH | 0.050766 | 0.0 | 0.0 |
