Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0017650 | OGI:09061370 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:21400939-21405935 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaggttttgattggaatggacgagatcaagggtgtgttttatcaagtcatgctgtggaaatgggtatcagaatctgatgttaacattcatatacaagtaacagcgtgcaaagttatactgtaatctgtattatgcagtgcaagaatcccaagtaatcacactgacagttggcattgacattagcctttttatcctttgcaggttactcagacacgatgctggaactgctactttttgctttggaagatcttaagatggttttgaagtctcaggagtctgatcttctcataggcttgggaaatgctgaagatgttgttctcaagcttgtaaatgaggtcactatgcaaggtttatgttgagaattgagcttaagagtttatgcaaaccttcactgctagccatctaacatatccagatctcctgattgcatgcattgatggagcataacaggtacaagcgggcctcattttcacagaagaggaagttgagtacagagtgcgcaatgttctggccagtgttgaatcatctctctctaatgcatcattcctatcgggaaaccctcctgagatagtggtttggagtgcctcattgtatgactacaaggtaatttgtatctcaggttatcattccctattgctatcctctagcaacctaattatgtttggcatgctaaaatcattccaccagaatccgagggaattgtcaacatcacacaaccaatttttgaaggaaaaattaccgatgaacacacctcttgctgccccgtctttacctgctctgaacatagagatagagacaggtgtatttcagttctcttttttttttggttagtgatTAtatccttgatcatttttggtgtgtgcattatgataccatgacaatttcctgttcaggttctctccccacactggaagaactaaaagggtttcttaaagagagtagaacgtcagagaataattgggttcctctcaagggcacatcagccagatctattcttaaaaagactctcagccagataaatgtcaaaaccggtgttgcatcaagtggcagcgatggaggagaggataccactgcatattatgctatgtcagggaggaagatccaaaattcaatgttcacatcagaaagctcaacagaagttagaggtggaacggaaatcactttggatgctttagctgcatacctgaaatacctagaaggaacagggaaggctagttggcaagagtacgtcgcaccacttctttttaaaatctaattacattcagcactattggtatgtttgtaactttgtatttgaaaatgttgcctagctcataaggtaaatgcagtctatgatgtcatatcagtcatcaatgatttttctgataacaggctttgtttaaatttcatatccaggttgcatgataaagtacggttaactgaaactagagatggtgcctcgttttgcactttgtttggtcctgcacttcagcttggagttatatccaagaggagagtttaccatgaaactattcagtatgagagagaccggaatgctggatttatatcaccatttggatactcaacacctacagtgacagcagcagtagatgctatctgttcaatggaggtacttttgtaactgtcctgttctcaaaaccattcgtccataccttttcctcctcttttcggtgatcttgttttcctctaacaatgtctttctgaacatgaaagtggtattggctcttggccttgaaatcccaagtatgcattgaaggaaattaccctgtcagaatctggagatggaaaggtcatcttatacaggtactattagttaacttcaagatccacactctctatctctactgcatcagaaaccataacttatctatgtaacaggaatcatgtcaaatgcaagtagtcctagaattggatataattacaatcagcaatgttagtcgttaaaatgaattgtgatggcttggtcaaccactaaaaaggaccaatgtattatcctctgaactattcatctttgcacttggatccttccaccttctggttgccgatacagacccctagataggtaagcataaaacattttcttctatcccatattagtatctctgaaactaactaggatttcagctgaaccatttaaaagttccatccagcagggcagcagctcttcttccaagcccatattttttactgtagaaagttggaaaatcttgtgtcccggttcccatgtttttgttttatttgattgccaggccttgacaaagttctgctttgtatggactgtatatcggtattagcgttgtgtttctatataattaacacagtttttgttgttagtctattgcatgaatgctatcaaatatcaatatacacaacacctaatatgctagtatagacccctgtttctgatgacatcatattgtttttatgatttttttagttctatgtaatgcatcatgtattcaatgtacttgttttccgcttcctgtatttcctgtgcagctaagttcctaatttaattgttttgaaacatgtattggcagtatacctctgttggtcatgagggtccttcggttcttcttgtgcatggatttggagcttccctacagcattttcgtgataatataggtgccattgctgatcagggatgccaagtttgggcaattacccttcttggcttcgggaaatcagagaaaccaaatatcaactattcagaacttttatggtcggaattactgagagacttcattgttgatgttgtgaaggagcctgttcatcttgttggtaactcaatcggaggtatattttgatttataaatctttcgacgtttctgggggtgatgggcaacacatcgtttacccaaaacaaccttaattaattcatttcttcataatattgtcaggttatatctgttctattactgccagcttatggccttctcttgcaaggtctctgatccttttgaatacagctggttcagttgtgccaagttactcttttattccattaagtgaagtaaggcgaccagcattcactgaaactgttctacatttgaattattttagctagtacatcttatctgaatgatactcataggtcaaagacttactaatattgcattagtaacagtggcactggttagtggctatatgcttgttataaaaaaaatgagtggaaatattgtatcttattaaatgtctgaggcattgtattcacatgggctctttctcatacattttcgtgttactttagacttaggacgattgaaaatatgcacactaaaatctcagcagttctttttggctaacctagcgcaagctcctctcttgtagaaactgttgtatcattcaaatgcaatgtgcatgttatttctagtttgttggaattattaaagcatttaaaactctgaatagtagcatagataaggctaacaatttaatgtttcagatacatatcttttgtgcttatatcaaccagtgtttgtggaatgataatctgacagcagcaaaaataaatcgtactatttaggatcgaatttttagcactggaactatattacttccgctacaaattaactcaatgctactgaatgaaaaatacaaacaggaaggacggacttcatggctttccagtttgcaggcacgcctccttctgctcttcttgaggtcaagagcaggaggcattcttaaggaatactatcctacagtacgtgtatgatgtggttattgcttcctcaaatatttaaataatacatggttactaagcaataccgaaaaattcctgtgcagagaactgaacgggttgacaagccacttgtggatgagataataagagctgtatcctcagatcacaaagtatatttatcatagacttaaccgttgatatatgcagtatagcctgcaattctttttccttgacagacaaattcagtcatatgatcctggcgcagcaaccgttattgagagcatattcagtttcaatctttccattcctctcaactttttatttgattcttttggtggaaaaatcttaattgttcaggtaTtttctgatataaaaaaatggtgtggattcataccggtacctaatttagttactgcaacatgcggatagctaatactaccttcatgtgctttttttggggaaacaagggaatgaaagatccacttacAaaatccaagtcatttgtttccatgcttagggagcattgcagcaaggtccatattagagagctagatgcaggtgaatctctctctctctcctgtgcgcaagttctcattcatgaacgtcttcaggggttaggggttactgatgttagtttttttcttctcatactgaaatgtgtcaggtcatgctccacatgatgaagttcctgatgaagtgaactccttgctgtgcgaatggatcaaagagactggcgcttagccagcaatggagttccatcctacttagatgtctggtaaccttatccattaactgacttctcgattatactaacttgatcgttggaagcaTttttttctaagaacttgatcccaatgtgcccgttgacacttctgtactttttttgcttcatgtcttaggtggcaaaaaggagatgaatattgaacactgtacagaattgtatgtgtagattacttatttactcttaatcttcatatcattttctggaatttcaaaatgaaatgcaatatatgttgaatgaaaggAaaaacagcatcgagcaggtttgatagcaagtcggcacaagaagatgagatgcaattcgcactcctgatgaactttctggtggttcttaaagctgtttttgtttatggacctagctcaaaatcaaccttgaaccctacattacaagagttgtctaaatctaatcatacaaacttttgaccccatcgtgcaagtaatgtctaatcgtgccacatttgtactctcttgtagtcttgttttatatggctcgacatagatagaagtacaaaatgaactaatatttcatgcc
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| CDS seq | atgaaggttttgattggaatggacgagatcaagggtgtgttttatcaagtcatgctgtggaaatgggtatcagaatctgatgttaacattcatatacaattggcattgacattagcctttttatcctttgcaggttactcagacacgatgctggaactgctactttttgctttggaagatcttaagatggttttgaagtctcaggagtctgatcttctcataggcttgggaaatgctgaagatgttgttctcaagcttgtaaatgaggtacaagcgggcctcattttcacagaagaggaagttgagtacagagtgcgcaatgttctggccagtgttgaatcatctctctctaatgcatcattcctatcgggaaaccctcctgagatagtggtttggagtgcctcattgtatgactacaagaatccgagggaattgtcaacatcacacaaccaatttttgaaggaaaaattaccgatgaacacacctcttgctgccccgtctttacctgctctgaacatagagatagagacaggttctctccccacactggaagaactaaaagggtttcttaaagagagtagaacgtcagagaataattgggttcctctcaagggcacatcagccagatctattcttaaaaagactctcagccagataaatgtcaaaaccggtgttgcatcaagtggcagcgatggaggagaggataccactgcatattatgctatgtcagggaggaagatccaaaattcaatgttcacatcagaaagctcaacagaagttagaggtggaacggaaatcactttggatgctttagctgcatacctgaaatacctagaaggaacagggaaggctagttggcaagagttgcatgataaagtacggttaactgaaactagagatggtgcctcgttttgcactttgtttggtcctgcacttcagcttggagttatatccaagaggagagtttaccatgaaactattcagtatgagagagaccggaatgctggatttatatcaccatttggatactcaacacctacagtgacagcagcagtagatgctatctgttcaatggaggtacttttg
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| Protein seq | MKVLIGMDEIKGVFYQVMLWKWVSESDVNIHIQLALTLAFLSFAGYSDTMLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKLVNEVQAGLIFTEEEVEYRVRNVLASVESSLSNASFLSGNPPEIVVWSASLYDYKNPRELSTSHNQFLKEKLPMNTPLAAPSLPALNIEIETGSLPTLEELKGFLKESRTSENNWVPLKGTSARSILKKTLSQINVKTGVASSGSDGGEDTTAYYAMSGRKIQNSMFTSESSTEVRGGTEITLDALAAYLKYLEGTGKASWQELHDKVRLTETRDGASFCTLFGPALQLGVISKRRVYHETIQYERDRNAGFISPFGYSTPTVTAAVDAICSMEVLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0017650 | OsKeNa_09g0017650.03 | Chr09 | 21401132 | 21405764 | + | NAM | ||
| CDS seq | atgtattggcagtatacctctgttggtcatgagggtccttcggttcttcttgtgcatggatttggagcttccctacagcattttcgtgataatataggtgccattgctgatcagggatgccaagtttgggcaattacccttcttggcttcgggaaatcagagaaaccaaatatcaactattcagaacttttatggtcggaattactgagagacttcattgttgatgttgtgaaggagcctgttcatcttgttggtaactcaatcggaggttatatctgttctattactgccagcttatggccttctcttgcaaggtctctgatccttttgaatacagctggttcagttgtgccaagttactcttttattccattaagtgaagaaggacggacttcatggctttccagtttgcaggcacgcctccttctgctcttcttgaggtcaagagcaggaggcattcttaaggaatactatcctacaagaactgaacgggttgacaagccacttgtggatgagataataagagctgtatcctcagatcacaaatcatatgatcctggcgcagcaaccgttattgagagcatattcagtttcaatctttccattcctctcaactttttatttgattcttttggtggaaaaatcttaattgttcagggaatgaaagatccacttacAaaatccaagtcatttgtttccatgcttagggagcattgcagcaaggtccatattagagagctagatgcaggtcatgctccacatgatgaagttcctgatgaagtgaactccttgctgtgcgaatggatcaaagagactggcgcttag
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| Protein seq | MYWQYTSVGHEGPSVLLVHGFGASLQHFRDNIGAIADQGCQVWAITLLGFGKSEKPNINYSELLWSELLRDFIVDVVKEPVHLVGNSIGGYICSITASLWPSLARSLILLNTAGSVVPSYSFIPLSEEGRTSWLSSLQARLLLLFLRSRAGGILKEYYPTRTERVDKPLVDEIIRAVSSDHKSYDPGAATVIESIFSFNLSIPLNFLFDSFGGKILIVQGMKDPLTKSKSFVSMLREHCSKVHIRELDAGHAPHDEVPDEVNSLLCEWIKETGA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0017650 | OsKeNa_09g0017650.02 | Chr09 | 21401132 | 21405935 | + | NAM | ||
| CDS seq | atgtattggcagtatacctctgttggtcatgagggtccttcggttcttcttgtgcatggatttggagcttccctacagcattttcgtgataatataggtgccattgctgatcagggatgccaagtttgggcaattacccttcttggcttcgggaaatcagagaaaccaaatatcaactattcagaacttttatggtcggaattactgagagacttcattgttgatgttgtgaaggagcctgttcatcttgttggtaactcaatcggaggttatatctgttctattactgccagcttatggccttctcttgcaaggtctctgatccttttgaatacagctggttcagttgtgccaagttactcttttattccattaagtgaagaaggacggacttcatggctttccagtttgcaggcacgcctccttctgctcttcttgaggtcaagagcaggaggcattcttaaggaatactatcctacaagaactgaacgggttgacaagccacttgtggatgagataataagagctgtatcctcagatcacaaatcatatgatcctggcgcagcaaccgttattgagagcatattcagtttcaatctttccattcctctcaactttttatttgattcttttggtggaaaaatcttaattgttcagggaatgaaagatccacttacAaaatccaagtcatttgtttccatgcttagggagcattgcagcaaggtccatattagagagctagatgcaggtcatgctccacatgatgaagttcctgatgaagtgaactccttgctgtgcgaatggatcaaagagactggcgcttag
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| Protein seq | MYWQYTSVGHEGPSVLLVHGFGASLQHFRDNIGAIADQGCQVWAITLLGFGKSEKPNINYSELLWSELLRDFIVDVVKEPVHLVGNSIGGYICSITASLWPSLARSLILLNTAGSVVPSYSFIPLSEEGRTSWLSSLQARLLLLFLRSRAGGILKEYYPTRTERVDKPLVDEIIRAVSSDHKSYDPGAATVIESIFSFNLSIPLNFLFDSFGGKILIVQGMKDPLTKSKSFVSMLREHCSKVHIRELDAGHAPHDEVPDEVNSLLCEWIKETGA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0017650 | OsKeNa_09g0017650.04 | Chr09 | 21401132 | 21405596 | + | NAM | ||
| CDS seq | atgtattggcagtatacctctgttggtcatgagggtccttcggttcttcttgtgcatggatttggagcttccctacagcattttcgtgataatataggtgccattgctgatcagggatgccaagtttgggcaattacccttcttggcttcgggaaatcagagaaaccaaatatcaactattcagaacttttatggtcggaattactgagagacttcattgttgatgttgtgaaggagcctgttcatcttgttggtaactcaatcggaggttatatctgttctattactgccagcttatggccttctcttgcaaggtctctgatccttttgaatacagctggttcagttgtgccaagttactcttttattccattaagtgaagaaggacggacttcatggctttccagtttgcaggcacgcctccttctgctcttcttgaggtcaagagcaggaggcattcttaaggaatactatcctacaagaactgaacgggttgacaagccacttgtggatgagataataagagctgtatcctcagatcacaaatcatatgatcctggcgcagcaaccgttattgagagcatattcagtttcaatctttccattcctctcaactttttatttgattcttttggtggaaaaatcttaattgttcagggaatgaaagatccacttacAaaatccaagtcatttgtttccatgcttagggagcattgcagcaaggtccatattagagagctagatgcaggtcatgctccacatgatgaagttcctgatgaagtgaactccttgctgtgcgaatggatcaaagagactggcgcttag
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| Protein seq | MYWQYTSVGHEGPSVLLVHGFGASLQHFRDNIGAIADQGCQVWAITLLGFGKSEKPNINYSELLWSELLRDFIVDVVKEPVHLVGNSIGGYICSITASLWPSLARSLILLNTAGSVVPSYSFIPLSEEGRTSWLSSLQARLLLLFLRSRAGGILKEYYPTRTERVDKPLVDEIIRAVSSDHKSYDPGAATVIESIFSFNLSIPLNFLFDSFGGKILIVQGMKDPLTKSKSFVSMLREHCSKVHIRELDAGHAPHDEVPDEVNSLLCEWIKETGA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0017650 | OsKeNa_09g0017650.01 | Chr09 | 21400939 | 21402841 | + | NAM | ||
| CDS seq | atgaaggttttgattggaatggacgagatcaagggtgtgttttatcaagtcatgctgtggaaatgggtatcagaatctgatgttaacattcatatacaattggcattgacattagcctttttatcctttgcaggttactcagacacgatgctggaactgctactttttgctttggaagatcttaagatggttttgaagtctcaggagtctgatcttctcataggcttgggaaatgctgaagatgttgttctcaagcttgtaaatgaggtacaagcgggcctcattttcacagaagaggaagttgagtacagagtgcgcaatgttctggccagtgttgaatcatctctctctaatgcatcattcctatcgggaaaccctcctgagatagtggtttggagtgcctcattgtatgactacaagaatccgagggaattgtcaacatcacacaaccaatttttgaaggaaaaattaccgatgaacacacctcttgctgccccgtctttacctgctctgaacatagagatagagacaggttctctccccacactggaagaactaaaagggtttcttaaagagagtagaacgtcagagaataattgggttcctctcaagggcacatcagccagatctattcttaaaaagactctcagccagataaatgtcaaaaccggtgttgcatcaagtggcagcgatggaggagaggataccactgcatattatgctatgtcagggaggaagatccaaaattcaatgttcacatcagaaagctcaacagaagttagaggtggaacggaaatcactttggatgctttagctgcatacctgaaatacctagaaggaacagggaaggctagttggcaagagttgcatgataaagtacggttaactgaaactagagatggtgcctcgttttgcactttgtttggtcctgcacttcagcttggagttatatccaagaggagagtttaccatgaaactattcagtatgagagagaccggaatgctggatttatatcaccatttggatactcaacacctacagtgacagcagcagtagatgctatctgttcaatggaggtacttttg
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| Protein seq | MKVLIGMDEIKGVFYQVMLWKWVSESDVNIHIQLALTLAFLSFAGYSDTMLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKLVNEVQAGLIFTEEEVEYRVRNVLASVESSLSNASFLSGNPPEIVVWSASLYDYKNPRELSTSHNQFLKEKLPMNTPLAAPSLPALNIEIETGSLPTLEELKGFLKESRTSENNWVPLKGTSARSILKKTLSQINVKTGVASSGSDGGEDTTAYYAMSGRKIQNSMFTSESSTEVRGGTEITLDALAAYLKYLEGTGKASWQELHDKVRLTETRDGASFCTLFGPALQLGVISKRRVYHETIQYERDRNAGFISPFGYSTPTVTAAVDAICSMEVLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 21405562 | 21405657 | + | OsKeNa_09g0017650.02 | OsKeNa_09g0017650.02,OsKeNa_09g0017650.03 | All |
| A5 | Chr09 | 21405393 | 21405523 | + | OsKeNa_09g0017650.04 | OsKeNa_09g0017650.04,OsKeNa_09g0017650.02,OsKeNa_09g0017650.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.358390 | 0.000000 | 1.734752 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0532700 | SBH | 13.351435 | 9.863537 | 6.315846 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36240 | SBH | 9.179013 | 5.907640 | 1.472292 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0532700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017550 | SBH | 1.105110 | 3.295591 | 5.519938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017620 | RBH | 0.736593 | 0.000000 | 0.794865 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017860 | RBH | 0.000000 | 0.000000 | 0.799619 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017610 | SBH | 0.523492 | 0.009268 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017750 | SBH | 32.298496 | 8.352662 | 19.264902 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0350200 | RBH | 10.3789475 | 3.431774 | 3.00867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017590 | SBH | 0.922614 | 0.293244 | 2.974820 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0338600 | SBH | 0.971669 | 2.698415 | 3.126566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017640 | SBH | 2.481254 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017420 | SBH | 3.424902 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017450 | SBH | 51.174820 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017370 | SBH | 3.708144 | 0.0 | 3.598376 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017510 | SBH | 2.006246 | 0.508122 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017890 | RBH | 1.508702 | 0.926498 | 3.964863 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017740 | RBH | 4.034605 | 3.038103 | 3.714351 |
