Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0015460 | OGI:09056500 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:19786500-19790072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cctcagactgtaaatgatttcagcagtagattgaaacttctcatttcctaactggacagattcagttaaaccgatacaaatccatgcccaggaagttttccaagacattagctagatgtgtgtcctaatgacagttttcagttcgctacagagcagaagttcccggtttcagaaaggtagaattccatcctcctgggtgacatactgatagggatcttgatcaggtggtgggcaatatgagtcttctgctgctgctgccggccaggacagtgacgctgttggagcctcctcgtcatcaatagcgacaaattcttcgtcttcagaagtcggctcggcaaatggtgcgtctattctctcccagttcaggtcatctctgcaaagaaggctaggctcttcactgacccattcatctaaaacatcaatattgtcaatgctgattgggtcgatggcatctctgtgtttgtgaaggttcctacaagattgttaccaatattagtaagtagacaatcacatgatgagagtatcatattagcaaatagttagttaatcagtaaattccagactattataccgttcccgaagcttctggttgtattgaaggaagacaacatcacttagccttgagcgttcaagcctgctaatctttcttgagtggatatgatggaaaatgtcccaattcctttcgcagcctgttgcgctgcagcattggccaaggactcgctttgcaagaccttggagctcgagagttccattgccaaagttatcccaccatgcaactaataaacaaacatgtaacaTtgtgagaatgaaaataaatccatatattcaaaaaacagttcgaggaattcaggtttattttccataaacaccggtaaaatacctcagataatcaatgtaataagtatacatggaggaataaattgttacctggatcaagtttttcatgttgacgaattgcaattggtaggccaaagtcaccagttcctttcttatactcctcaagttggagaaatatcttatcttgaatatcatcatcagggaccagacaagaaattgtcttaacaagtcctctatgtgcatagctttgcatcttgaaagtgggactaaagaatattccgggattgaaaaacaaccctgctgcctgcaatggactgttaagttgtttctccatcctagcatcaattactctaacatacggcccataaagagacaccttatgcatcatccgtgccctgatcaattcctttgccttttccattgcttcgtacaagtaacccattgaaggtttttcattactatccaccagtcgaagcacacacaacagtggctcagtgaccttgactacatgcttacactgggcccaaaagtgggcattcaaaatcatagctgcaacctctttgccgacaccacccttagcataagttgattttacccatttgttactagtaaccatttggcagagctctttctcaaatttaagaatacattggagactaaggaaatgtgtggcaaatcttgagatggctggacggcacagatctctaccacctgtgaattctttcctcatcaatgacaaaacccatgcatgattatatatgaactgggttatcttctttgccttatttagagtttcatcaatcataggaaaatatctaggatctgcgagattctccaacatcaagtcaatgcaacgtgctgcacatggagaccaaacaaaagttttatacctttcttccagaaccttaacagtagtcttatatctcggatctaaatcagtgataaactgaacaatgttttccggcccaacttctctaacaacctgatcaaagatctcaagcaaatttgctttctctgctgaagtatcgacagatttcaaaaacatagtacctcgtcggcagtatacaaaaaaatttattattgaactctctccatgattcttcttcctatcagcaataagtgagcaaccgcatgcattccattctttcttcatatcatgaagatattcgcgaatgtcatcagtaagatgtttcaacaatggcccgcgtaggtcatgatacaacggtcccttgagacctgctccagcggatgctatggcgtctaacattggctgatagaaaggagattttgctgcactaaagggtatatttgcatcataccaccatcttgccatagcaactctagcattgtgtaacagatcatttggaacttccacaccatccatgctatgttgaaccaagtctcgtgataccaacaatgcatcattgcttggttcaaaacctgcagcagcttgtggagaaacgtatgctgttctttcgcaacctgcagcagctagtggagagatgtatcctattctttcaaaacctgcagcagcttgtggagagacgtatcctgttctttcaaagcctgcagcagcttgcggagaaacacaccctgttcttcgcttcctagacggcctaagttgaacccctgagcttccattcgacaaaacagcatcagaagaatcctcttcaaagcctgaatagtggccatctcgagtgtcatgccgtgacctatgctcattgacaagttgcttcatctgacgcctgacatcattgggcaccttcttgcaggcttgaacttggccggtaattccagcaagatggtacttaaagcgggtgatgccaccgccaccAatcttcttcccacaatgaagacatgctaaggcattctttgaattgccaattacttttgcatgaaCccatgcaggatccagtggccttgaggcagaagctggaggtgatgccattatggtgtctgaaccaccaactgcctcagttctaccatagacagaataacagaaaatctctcagaaaacatttaacagtaactattgatatggtattactggacagtaattctattgctaagcatacatgctcaaacacttagcaataactcttaatatggtattactggacagtaattctattgctaaagcatacatgctcaaatgaaatgaaattaagcagtaactattaagcaaccacagcaccgagcatagaagttctgaatctgctaacactgatagcggtaaccggcgatttcaactacactgagatcgaaaaccgtgtgatttcagtagaatacaatccaaattcgatctaagagactgaaaaaaaaagaatcggataagagtacaagtgcagagcagcagaaatccacctctcgtcgaccatcagatggtagaggccgaccgcgtcggcgtcggcgtcggcggcttcctcctccttgtgctcgccgctctccagccggcagatctgctcggcgagctcagagaggggaaaaccgggaggagactgggcggagtcgggcgagaaaccggaagtcattcactgattcacagcggcgcgagcgagctgtgggggaggactagggtgggtgaccgcggcggctaccggcggacgccggcgagatttccatggaatccggcggttgccgcggggatttcgccggttgccgcttgcatcggcgcacgagacggcggaggaggagaagacctaacaaaatttttacagaatttttctacgacgagat
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| CDS seq | atgacttccggtttctcgcccgactccgcccagtctcctcccggttttcccctctctgagctcgccgagcagatctgccggctggagagcggcgagcacaaggaggaggaagccgccgacgccgacgccgacgcggtcggcctctaccatctgatggtcgacgagagaactgaggcagttggtggttcagacaccataatggcatcacctccagcttctgcctcaaggccactggatcctgcatggGttcatgcaaaagtaattggcaattcaaagaatgccttagcatgtcttcattgtgggaagaagatTggtggcggtggcatcacccgctttaagtaccatcttgctggaattaccggccaagttcaagcctgcaagaaggtgcccaatgatgtcaggcgtcagatgaagcaacttgtcaatgagcataggcttgaacgctcaaggctaagtgatgttgtcttccttcaatacaaccagaagcttcgggaacggaaccttcacaaacacagagatgccatcgacccaatcagcattgacaatattgatgttttagatgaatgggtcagtgaagagcctagccttctttgcagagatgacctgaactgggagagaatagacgcaccatttgccgagccgacttctgaagacgaagaatttgtcgctattgatgacgaggaggctccaacagcgtcactgtcctggccggcagcagcagcagaagactcatattgcccaccacctgatcaagatccctatcagtatgtcacccaggaggatggaattctacctttctga
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| Protein seq | MTSGFSPDSAQSPPGFPLSELAEQICRLESGEHKEEEAADADADAVGLYHLMVDERTEAVGGSDTIMASPPASASRPLDPAWVHAKVIGNSKNALACLHCGKKIGGGGITRFKYHLAGITGQVQACKKVPNDVRRQMKQLVNEHRLERSRLSDVVFLQYNQKLRERNLHKHRDAIDPISIDNIDVLDEWVSEEPSLLCRDDLNWERIDAPFAEPTSEDEEFVAIDDEEAPTASLSWPAAAAEDSYCPPPDQDPYQYVTQEDGILPF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0015460 | OsKeNa_09g0015460.01 | Chr09 | 19786500 | 19789867 | - | NAM | ||
| CDS seq | atgacttccggtttctcgcccgactccgcccagtctcctcccggttttcccctctctgagctcgccgagcagatctgccggctggagagcggcgagcacaaggaggaggaagccgccgacgccgacgccgacgcggtcggcctctaccatctgatggtcgacgagagaactgaggcagttggtggttcagacaccataatggcatcacctccagcttctgcctcaaggccactggatcctgcatggGttcatgcaaaagtaattggcaattcaaagaatgccttagcatgtcttcattgtgggaagaagatTggtggcggtggcatcacccgctttaagtaccatcttgctggaattaccggccaagttcaagcctgcaagaaggtgcccaatgatgtcaggcgtcagatgaagcaacttgtcaatgagcataggcttgaacgctcaaggctaagtgatgttgtcttccttcaatacaaccagaagcttcgggaacggaaccttcacaaacacagagatgccatcgacccaatcagcattgacaatattgatgttttagatgaatgggtcagtgaagagcctagccttctttgcagagatgacctgaactgggagagaatagacgcaccatttgccgagccgacttctgaagacgaagaatttgtcgctattgatgacgaggaggctccaacagcgtcactgtcctggccggcagcagcagcagaagactcatattgcccaccacctgatcaagatccctatcagtatgtcacccaggaggatggaattctacctttctga
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| Protein seq | MTSGFSPDSAQSPPGFPLSELAEQICRLESGEHKEEEAADADADAVGLYHLMVDERTEAVGGSDTIMASPPASASRPLDPAWVHAKVIGNSKNALACLHCGKKIGGGGITRFKYHLAGITGQVQACKKVPNDVRRQMKQLVNEHRLERSRLSDVVFLQYNQKLRERNLHKHRDAIDPISIDNIDVLDEWVSEEPSLLCRDDLNWERIDAPFAEPTSEDEEFVAIDDEEAPTASLSWPAAAAEDSYCPPPDQDPYQYVTQEDGILPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0015460 | OsKeNa_09g0015460.02 | Chr09 | 19786505 | 19790072 | - | IsoSeq | ||
| CDS seq | atgctaggatggagaaacaacttaacagtccattgcaggcagcagggttgtttttcaatcccggaatattctttagtcccactttcaagatgcaaagctatgcacatagaggacttgttaagacaatttcttgtctggtccctgatgatgatattcaagataagatatttctccaacttgaggagtataagaaaggaactggtgactttggcctaccaattgcaattcgtcaacatgaaaaacttgatccagttgcatggtgggataactttggcaatggaactctcgagctccaaggtcttgcaaagcgagtccttggccaatgctgcagcgcaacaggctgcgaaaggaattgggacattttccatcatatccactcaagaaagattagcaggcttgaacgctcaa
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| Protein seq | MLGWRNNLTVHCRQQGCFSIPEYSLVPLSRCKAMHIEDLLRQFLVWSLMMIFKIRYFSNLRSIRKELVTLAYQLQFVNMKNLIQLHGGITLAMELSSSKVLQSESLANAAAQQAAKGIGTFSIISTQERLAGLNAQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.481176 | 1.099973 | 2.044090 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0499600 | RBH | 1.707300 | 1.695571 | 4.899056 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32380 | RBH | 1.094515 | 1.081099 | 1.195521 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0499600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0324000 | RBH | 2.9722205 | 2.9741845 | 2.4729015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015210 | RBH | 1.217283 | 0.0 | 1.857522 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015330 | RBH | 0.147399 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015750 | RBH | 0.350590 | 1.887463 | 1.952079 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
