Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0014780 | OGI:09055330 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:19235427-19239073 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggtgtggagctctgggtggacaacaagcggtggccggtgaggccaaaacagcaagggtggcagagcttggggaatcctacatcgactctgacttcccaccttgccgccccgccactgccgttatggagaagagggatgataaacggaggaggtagaggtagctacacgaagaggaggtaggcaagcggtggccctccatgaggcagagaggaagggtgtggaagtgagggagatggcatcagtgctgggctcatcagcctcgtctccaccgcttgtcgggttcctgctgctatctgcaaaagaaagaagaaagagaagaataagagtaggctatgacaagtgggcaccacagttgtttactttcttttgtaccacttacacttgaatcctctatctatttttggttcatcttatgactagactgccattagatgccaaatcactgaaaactatcctcaaaacagtcaagggggttattttaaaatattttaataattaaagtggtagataactagatataccaagttttgcacttgaaatgtactcctatatgagaactcacattagacttttcccccgccgaacaaaatcgagcctcttctcttctcgggccaccaaagaccaaacaaagctgggcctccgtgtgggcctcctcggaataggatcgctaccatatccgaagggtccacctgaaccgtccgatctaccatgcgcggtggatatcgattaggcgtcgtctcatcgtcttcctcctcgcgtgcggcggcggcggcggcggcggcgcgccagtggccgtgactgactctgcgccggcggcggcggcggcgtgcaccggcgaatcccctcgcgggaacggaggtctaaagcctctcccgccaccactatcccttcctcttcggctcacgctcccgtccccaataacctccgctttcgtcagctccattcttgcaggcgtctctcctcggctccgctcgcttcggacagtccgaaggctaaggtgcggattttacttcattatcctctgcaatttgtgactaatttgagttactactatcttccaatttatctgctctcccgggtgaggggaatggtttgggtgcattggcacttgctgaattcaattgtgcatataatgcattattttccaccagcttagggttgtagtcttgtgaattcgggcatgggaatggcctggtagcacgaaatctcggcttcgcggccaagacaggaacttaaataatcttaatgagaatagttttctagtgattcgctgctgcccatgccctcgaatgctcgggatttgggagggcaatttctccctgtagcacatcctgagaagttcacgaggataatatggattctctacgcaagtgtgacaaagaaaaggaggacaaattgcttttgttctagcaagtgtgcgcttatgatttagcatgcccatccttcccattgttttgtcgaatctcagcagaaagtggtcgattgctagaggttggagacattcagtcttttatgctcactaataactgtctgccacacatttatttcctggatatgtcaacgatgaaactattttttgtgctgaaaaataatttaatcctcttcaattgatactaatgttgacatcaatcatatctatcataggtccgttgtgtcatggtggatcttctacttcattgtggtggtggcttgctttatttgattttcgtaagaattatctcatgttccactaattcttaattttggtcatcgaaacatgtttttcagcttatacttggtggcgcggtgctgcctgaagcagatggctatctacacacctactgtctgtttacaacgctgtacttatagcttgtattctcagtcttgtcagttacaaggagggctgacacagggcatggcattatggaagtattctcgttcacaagcagtcggttatcatgtaaagatcagattagttggtttgcctcctaagatgaacataaaatcactgcgaacatgttttgccagttcggggaaacagttgtgtggcagacaacctgcgagggataatattctaaagctaaagcttgatgagccctcacgtcagaagttgtatagtattctctgggattcaagaagcataggacacaaagttggagctacaggcactggacttttcctaagttttgcagttcctgcgaaggcaaatgctgagggtcctgtggacaataatactgatagcccccaaactactgaatcgtccactagttatgctcatgggaaaaaagtttgcacggattattctgttactggtgagacagtgtgcgtgTttttctaattactatacaatatgcatttggttaaagcatgcatcgtctgctcacttgtgtttgattcacatggtaaccctcaggcattcctggagatggaaggtgcttgttccgatctgtggctcatggtgcatgtattaggtcaggtaagcgacctgatgatgatctccagagaaagatggctgatgacttaagagcaatggtatgcttgtaatgttctgctgatgtactactgttgatccattctgttcttagatactaaatgttgctctggaagcaacgcaaccatttctggtgaatttatcatgtaaaagatctatttaaatggtgtcactgttaggtcgccgatgaatttatcaagagacgggcagagactgaatggttagttctacctgtcctcattattctgttagttaCTctgcatctaaatattgttgagttacgcattcttatgcttcgctatgacattaattcacaggtttgttgagggggacttcgatgcatatgtctctcggattaggaagccacatgtgtggggaggtgaaccagaactgttaatggcttcgcatgttcttcggtgagaattagccatgatgtttggagttattttactctcaccatttcaaatgcagtatacatttgtgcagtaacctgttagaatacttatgccctcttggtcatatttatatagggttgatggttagttggtttgcttttaatccattttaggattcctgggataagtttgtccacttatactgtcttgtttgtttgtttttttttgtcatgttatgactgttaagcatcttccTttttttttttgcggggatcttcctttttttttttcaaaacacaactcccaaaagtcattaatattccattttgttaggctttgaccaaagtttattaatgtagctcaacagcaatagtggatagtttcatatatgtgtagtcttgttgtattgtccttctgaaaacgggaagtaacaaaagctctaatatgccgttaccaatgtggccaggatgccaattactgtgtacatgcatgataaggaagctggtggtttaatagcaattgcagaatatggtcaggagtacgggaaagaagatccaattcaagttctttttcatggttttggccattatgacgctctacagataccaggaaagggtggtccaaggtcaaggctgtaacatttggagctcagattccaaacagtaagttttgaaccaacctttgtttccctttcttttcccagtacgcttgctgtccaaatgtaaccagaatctaccctcaacaaatttaaaatgctgcgatgttccaagttccaacc
More
|
||||||||||
| CDS seq | atggggtgtggagctctgggtggacaacaagcggtggccggtgaggccaaaacagcaagggtggcagagcttggggaatcctacatcgactctgacttcccaccttgccgccccgccactgccgttatggagaagagggatgataaacggaggaggcgtcgtctcatcgtcttcctcctcgcgtgcggcggcggcggcggcggcggcgcgccagtggccgtgactgactctgcgccggcggcggcggcggcgtgcaccggcgaatcccctcgcgggaacggaggtctaaagcctctcccgccaccactatcccttcctcttcggctcacgctcccgtccccaataacctccgctttcgtcagctccattcttgcaggcgtctctcctcggctccgctcgcttcggacagtccgaaggctaagcttatacttggtggcgcggtgctgcctgaagcagatggctatctacacacctactgtctgtttacaacgctgtacttatagcttgtattctcagtcttgtcagttacaaggagggctgacacagggcatggcattatggaagtattctcgttcacaagcagtcggttatcatgtaaagatcagattagttggtttgcctcctaagatgaacataaaatcactgcgaacatgttttgccagttcggggaaacagttgtgtggcagacaacctgcgagggataatattctaaagctaaagcttgatgagccctcacgtcagaagttgtatagtattctctgggattcaagaagcataggacacaaagttggagctacaggcactggacttttcctaagttttgcagttcctgcgaaggcaaatgctgagggtcctgtggacaataatactgatagcccccaaactactgaatcgtccactagttatgctcatgggaaaaaagtttgcacggattattctgttactggcattcctggagatggaaggtgcttgttccgatctgtggctcatggtgcatgtattaggtcaggtaagcgacctgatgatgatctccagagaaagatggctgatgacttaagagcaatggtcgccgatgaatttatcaagagacgggcagagactgaatggtttgttgagggggacttcgatgcatatgtctctcggattaggaagccacatgtgtggggaggtgaaccagaactgttaatggcttcgcatgttcttcggatgccaattactgtgtacatgcatgataaggaagctggtggtttaatagcaattgcagaatatggtcaggagtacgggaaagaagatccaattcaagttctttttcatggttttggccattatgacgctctacagataccaggaaagggtggtccaaggtcaaggctgtaa
More
|
||||||||||
| Protein seq | MGCGALGGQQAVAGEAKTARVAELGESYIDSDFPPCRPATAVMEKRDDKRRRRRLIVFLLACGGGGGGGAPVAVTDSAPAAAAACTGESPRGNGGLKPLPPPLSLPLRLTLPSPITSAFVSSILAGVSPRLRSLRTVRRLSLYLVARCCLKQMAIYTPTVCLQRCTYSLYSQSCQLQGGLTQGMALWKYSRSQAVGYHVKIRLVGLPPKMNIKSLRTCFASSGKQLCGRQPARDNILKLKLDEPSRQKLYSILWDSRSIGHKVGATGTGLFLSFAVPAKANAEGPVDNNTDSPQTTESSTSYAHGKKVCTDYSVTGIPGDGRCLFRSVAHGACIRSGKRPDDDLQRKMADDLRAMVADEFIKRRAETEWFVEGDFDAYVSRIRKPHVWGGEPELLMASHVLRMPITVYMHDKEAGGLIAIAEYGQEYGKEDPIQVLFHGFGHYDALQIPGKGGPRSRL |
||||||||||
| Function | OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 [UniProtKB/Swiss-Prot:Q8LBZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0014780 | OsKeNa_09g0014780.01 | Chr09 | 19235427 | 19239073 | + | NAM | ||
| CDS seq | atggggtgtggagctctgggtggacaacaagcggtggccggtgaggccaaaacagcaagggtggcagagcttggggaatcctacatcgactctgacttcccaccttgccgccccgccactgccgttatggagaagagggatgataaacggaggaggcgtcgtctcatcgtcttcctcctcgcgtgcggcggcggcggcggcggcggcgcgccagtggccgtgactgactctgcgccggcggcggcggcggcgtgcaccggcgaatcccctcgcgggaacggaggtctaaagcctctcccgccaccactatcccttcctcttcggctcacgctcccgtccccaataacctccgctttcgtcagctccattcttgcaggcgtctctcctcggctccgctcgcttcggacagtccgaaggctaagcttatacttggtggcgcggtgctgcctgaagcagatggctatctacacacctactgtctgtttacaacgctgtacttatagcttgtattctcagtcttgtcagttacaaggagggctgacacagggcatggcattatggaagtattctcgttcacaagcagtcggttatcatgtaaagatcagattagttggtttgcctcctaagatgaacataaaatcactgcgaacatgttttgccagttcggggaaacagttgtgtggcagacaacctgcgagggataatattctaaagctaaagcttgatgagccctcacgtcagaagttgtatagtattctctgggattcaagaagcataggacacaaagttggagctacaggcactggacttttcctaagttttgcagttcctgcgaaggcaaatgctgagggtcctgtggacaataatactgatagcccccaaactactgaatcgtccactagttatgctcatgggaaaaaagtttgcacggattattctgttactggcattcctggagatggaaggtgcttgttccgatctgtggctcatggtgcatgtattaggtcaggtaagcgacctgatgatgatctccagagaaagatggctgatgacttaagagcaatggtcgccgatgaatttatcaagagacgggcagagactgaatggtttgttgagggggacttcgatgcatatgtctctcggattaggaagccacatgtgtggggaggtgaaccagaactgttaatggcttcgcatgttcttcggatgccaattactgtgtacatgcatgataaggaagctggtggtttaatagcaattgcagaatatggtcaggagtacgggaaagaagatccaattcaagttctttttcatggttttggccattatgacgctctacagataccaggaaagggtggtccaaggtcaaggctgtaa
More
|
|||||||
| Protein seq | MGCGALGGQQAVAGEAKTARVAELGESYIDSDFPPCRPATAVMEKRDDKRRRRRLIVFLLACGGGGGGGAPVAVTDSAPAAAAACTGESPRGNGGLKPLPPPLSLPLRLTLPSPITSAFVSSILAGVSPRLRSLRTVRRLSLYLVARCCLKQMAIYTPTVCLQRCTYSLYSQSCQLQGGLTQGMALWKYSRSQAVGYHVKIRLVGLPPKMNIKSLRTCFASSGKQLCGRQPARDNILKLKLDEPSRQKLYSILWDSRSIGHKVGATGTGLFLSFAVPAKANAEGPVDNNTDSPQTTESSTSYAHGKKVCTDYSVTGIPGDGRCLFRSVAHGACIRSGKRPDDDLQRKMADDLRAMVADEFIKRRAETEWFVEGDFDAYVSRIRKPHVWGGEPELLMASHVLRMPITVYMHDKEAGGLIAIAEYGQEYGKEDPIQVLFHGFGHYDALQIPGKGGPRSRL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.146439 | 0.000000 | 1.681789 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0487700 | RBH | 1.526956 | 1.538344 | 1.064327 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g31280 | RBH | 1.006280 | 1.044697 | 0.271606 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0487700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0014800 | RBH | 0.252713 | 4.341699 | 2.379842 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021350 | RBH | 0.000000 | 0.0 | 0.883515 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015010 | RBH | 1.641538 | 1.407669 | 2.431856 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0014840 | RBH | 0.000000 | 0.058947 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0014900 | RBH | 3.443303 | 0.000000 | 4.938762 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0316000 | RBH | 4.659683 | 4.975737 | 3.6568825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0014750 | RBH | 0.321333 | 0.106507 | 0.511683 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0305600 | RBH | 3.8223225 | 4.4436885 | 6.0020765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0014740 | RBH | 0.165395 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014580 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014640 | RBH | 3.065360 | 4.108171 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014510 | RBH | 0.662331 | 0.0 | 0.864254 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015080 | RBH | 0.130681 | 0.000000 | 0.693790 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0014890 | RBH | 1.625975 | 2.762528 | 1.536517 |
