Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0013880 | OGI:09053200 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:18642716-18650208 | ||||||||
| Gene Symbol | OsbHLH032, OsBIM1 | ||||||||||
| DNA seq | agctcgcggcccgctgctggtagaggagaaggcgaagccaagccaagcgaagccaagcaaagggaagcgaagcggagaaaagcttgtcttgtagagaggaggggtctctcgtcgtctcgcgtcggaattctcgcgttgtggccgcggcatgattggtccggcgagcgatcgcggcgagtcggcagcggcggcggccgggaggcggtgggattgatcagcgagctacaattatgggcatccaaggtatgacgcacgcacgcatggtgagatcgaatgcaaagcatgcggagatgtcccgtgattttttctctttcgccgtggatccatggctgcgtcgcctaattcggcAaaagccgcgtcggtctcgtgttgctcgcaacgcagggaacaaggcgacgacgcgcgagcacgacttcctctcgctgtacaccaccgccgctaaggatccgtctctccagctccacgacgccaagccgccgcctccttcccAaggtctgaaaaaaaaaacccttcaattttgcctcttaatttctcggcgcaattctgctctctctcgtctcagttcttcgagctccgaactagcggttgcttgggcggtaggtagatctgtgaggagttgcagaatttggaaatttcgctgacaaatcaatcgggatggaaatcacgaaggggggcaggtgcgcaagaccattggttagttaattagcaagtcagtaagtacattattagcgctatcgcgtgtgatggtaggggttcaaatttcgtgcaaagttcgtgatgggaagcgacaaccaaaagcaacgaaaggatcacgtgtgggttggacgcaaggagccgtcgacggccttccatcctatctggctgggacccacccctccaacccacgggcttaatcatgattagcctggtcataaccctagctctagcttgtcaatactactagcctactagcacgtataccctctctagcttcttgttccaacttgtactgagatgttagaattaccgcaggtttcttcctgaggacgcacgacttcctgcagccgctggagaagccgacgccggcgccgacgccgcctccgacgagccagctgcagcagcagcagcagcaagcgttccccggcggcatcggaacgttcagcatcagccacgtcgccggcgcacgcccggtcgcggctgccgtcgtcaaggccgagccgacgccgttcgttctctggggccagcccgccgccgccgccgccgcgcAcccggtcgccgcactaggtacgcacatacatacactcgtctacagcgaatacctgcggcgccgcgcgcgcgcgcgcgcacgccgccgcggtagctagtggacgccgctctcgcgttcgcgtttgccTtttccggtcgccgacgttgacgctcgcgggggcacacgcgctgcgcggtgcgcgagcgcatcgccttttctcctctccttaccgcggtcgctttcgcggcatcacactcgcgcgcgcgtgcgcgtgagaccgagggagaaaggtggaggagggccgagggggaggggacaagctgggcctcgatcggtgggccgggcgatcagaagtttgggccggaaaatggggcccatgttgtccgtgcaaaactgagccttcgtctagtcgtcacgcgtcccaccacgtgaacgccaggtgcttagccgccggacgcggcccaccaccggtggccgccaccgcggctacggccacacgcgcgtctccacgtagagcaccactatcccactgacatgtgggccagtgggcattttctctgctgccttagacaaaagctaaaggcgagcactttgtcattgtgtgtactcctccactgtgcagggcaccaccaccaccaccaccagtggacgctccccttcgccggcgtcgggcaggtggccgccaccgcggcgaggcagcagcaggagtggaaggggcgagtcgggggaggcgggttcatggactctggctccagatccagtggcggcgccgggttcgacgacgacgatggcgtggccgcgcggcgtgaggtctcgtcctcgctcaaaggtaccccaattccgttcaattccgctcggtttcgcgagaaattttgttgttctgggttgctggccgcgtcgatggtggagaatccgcgggttttgcggggttttggcatcgttttcccccaattttttggcctgtgttttatgcgagaagcagagaaatgccccgttgttggtgctcacgaggtagtgtttgtgtagcagagaggaggagggagggtaggggggaagaagggaggaggaggtcgcgtgagctcatggagatggagatggagatgtactcgcggtgcgcgcggccatcccacatccaccagctgcatgcgcgcctcgtggtctccggccgcctccgctgcacctcgccgtcgctcgcgctcgcgctgctccgcgccgcgtgccgcgtgcgcgcgtcgccgtgcctgcgtcccctcgcccaccacctgctcgaccatatcccgcgcccgcacccgcatctgctccacgcggccgctcgcctcgcgtaccgtctgcgcctgccttccctcgcgctccgccactatgtcgccctccgcacgcaccacccggtgttcctccctcccgcagcggccatcgcggacatgctcaagtctgtccgtggccgcgccgcgcatgcccacgcgctacgcgtcaccgcccacgcaggggacactaggttcctggataacacacttgtcgcgatgtactttgcctgtggagatgtccagcgcgcacggcttgtgtttgagggaatgtgtgaccgggatgtcatctcatggacatcgctaatctcaggactagtgcaaaatggcagccccttgcaaggtatacagcagtttgcaacgatgatgcactgtgatgtacgccctgactttgtggtgctagtgaccgtcgccaaggcgttcatggagcttgataacctgccaggtgctgaatcagctcattccttagttgtcaagggcggtttccatgatgaacaagatgtgatgatcacattgacagccatgtatgccagctttgggtgcttagtagctgcgagggcgctttttgacatggtcccaccccagcaggtgaatgtgatcctgtggaatgccatgatatcaggttactccaagaatggatttgccagtgaggcagtgcatttatacaagcatatgcagctggttgctaggaacttggctcccgattctatcactttgcgatcagtaatatttgcatgtgctcagcttggctccactgagcttgcggcatggatggaggattgtgtatgccgcagtgagtacagggaggatgtgcttgtgaacacagctttgattgacatgtatgccaaatcagggagcatctctcatgcacgtgcagtctttgaacggatgcatgtggatgaccgtgatgtggtagtctggagtgctttaatcacgggttatggtgtgcaaggccttgtcaatgaggcttgcactttgtttcaggacatgaagcttgctggagtaagaccaaatgacgtgacattccttggacttctatcagcatgcaaccatgcaggtgctgttgagaaaggatggagctactttcactctatgaaacctgactatggaattgagccccagcaccagcactatgcttgcgtggtagacctgctttctcgtgctggacagcttgatagagcctaccaatttatactgaatatgcccatcaaaccagagatgactgtctggggcgctttactccatggttgcaagatgcacgggcactcaaacatggccatggctgaatgcgcagcacagcacatttttgagttggagcagtccaatgcagggcactatgttcagcttgcaaacatgtatgcatctgcagggatgtggagccaagtcgctggcatgcgagtcaccatgagagagaggggtgtcaccaaggcaacggggtttagcttcatcgaggttgatggagagatgcactcattccatgcttgggatcactcgcacccgagggccaccgagatattcgccatgctgtgccttcTttctccaactccaaccggagttggagggtgaaagttgttgagtgcctttaactagccatgcattgtttgtatcctgcaattgtttatgacctgagcagtcttcagtcagcattcattctgttatttgtatcttgttatgataatgcaaccacaatatatttcacaacagaacacctgaaccaacgaaaagaaaacgAaaaaaatattttttacataccagtacagcttatttatttacatatatggagtaaaatattctatggaacattcccctcaccttatttggtactaatgaatttttatttatgtagcagagttgacagtgagggtggatgggaagggtgggagctgcagtggaagtggtactgatcagcggcccagctcaccacgttcaaagcactctgctaccgagcagcgtcggcgcagcaagatcaatgacaggtaacatttcctgtatccggagtttctgaaccatagaaatggctattacagtatgattgtctgcaggacctttggtgctgtagattatgtttgaccacatgttatgttccctggatgaagagaatatactgcaggaatagagtgcctggttataaagtattgcaaaaatttctggtgtatttgtacatattgaggcaatgtttgtacctattaaatacagtgaatttgaaaagaaatcccaaatcagttttttaaacaaaaatcacAaaagggtataaagtgcactttactgagttatgcaagagcacattggcacaaaactacaaatcctctccatccaaaaaaaccctgaagttctcttttTTAAtcttgcaatctggaaaatcgaagacatgagtactaatgcttgttgaagactaagcaggtgtctagaggatgcattgtctaaataacttttggacatgtaattggtcgggcttcccttttgtatactgacaggAaaaaaatgtctttgtgaagtctcttaagtctagtattatgagtaaattgtcatattttgttcatgataaacaactggaaccacattcaatcgtcaaaaccatatgaatttctgagatcataaaggttatgcatgtaacgctaccaaatatttactttgaaagatcgtaggtatatgttcatgtggaacggaatgggtcgcttatatgaagttgagcaaacacttgtgtaactgtttcctttactctgcatcatttccacaggtttcagatacttagggagctgttacctcatagcgaccaaaAGagagacaaagcaacatttctgttagaggtatgctcgtagcagcagcctatttgatccaattagtctctccgaggtaatcagcttggttatttttttaacaccctttctaatgcaggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtccctgaatggaaccaagaaaatgcaaagatacttccatgggtaattactactcatttttatcctcccaagccagcgctgcttgattagcatttttatgaagtcaaattttggctgtctgcgtctgaacacagttttgtattttgcagtcaaacatatattttagatcgttctggaaaaattcacaagtaagttactgttgatattatacccttttcaaataatttcatttttcaattggtattctgaccagcatcttcctcatgctcttgtgctgcagagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaatgggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgacatcagcagctgcctcaggggcacaagaactggtggaaactgaccatgcagctagcgtgtcctacagatcagcagaaactccgacaaacattaccagtatgattgctaatccacaattgatttaatttttagaatagttttctctgctacctttctgagaccagaagcaggattggttattcacgaataaatctttctttgaacgtagacaatgttacatcccaagcccaagcccagtgggctagtccggctggtgtggatgactgtgcaatgaacagcgaaatgttaaataaccaacagttggcaattgatgaaggaacaataagcttgtcaagccaatattcccaacagtacgtctttaaaaatATAattcccagtgttattttgttccccttgctgggaaaagtacattgatgcataggtttgtttttgttgacttactacaggctacttggtacgttgactcatgcccttgaaagctcaggtgttgatctgtcccaatccagcatatctgtgcagatcaaccttggcaagcgagctgttaagagacctggtgctgatggatcctccagttctaaggtacatcaaagatattcatatgcccggctagagattcattttaaggatacaccatcagcaaaacttgaatagtcacaatcattcctgttgccagtttgtgatgaactgcgaacaaaatgaattgtttgacattatcctagtgcatgcgcattgcttattagacatatttgcatgaacttaactcaaagtcttaaccggtaacccatacacacccccacacccgcaaacccccataaagagcacggaggtgattctcacaaatatatctaggtatctaacatctggtattttgcattgatcaacgccatcctccccgacagatatctgatctgatgccactttacatctatgtaggagctccccagtacatcagcgaacaacgaaaacatgggtcaccagctgacgatgttagggggtggtactgaagaacttccacacccaacgaagcgccataaatcgggcaacagctgatggcggttctcactctgttgcatcatccagaCcCGATTGATCATTCTTTCCTCCCTACCAACCAGCCAGGACATTCCAGAATTGGATGTACATTATGTTAGCAGTGACGGCATCGCGTTGAACAAGGCAGACCTTGGTGTAATTCTTTCATTCAATCACTTGGCCAACCTGTTTTAAGAAAAAAAAAAGACCAAAGAAAGGCGCTTCTCATTGTGGATTGTGAAGCTGCTCTTGTACACAGGCTTCCATTCCTATGAGAAGCTCCCCCCTGACAAGACAGTCAGTCCTACGTTGTAACCTGTATGATAACTCAGCTGCACCTGTTAGCTATGTGAAGTAGTAATTCGTTGAAGTATTCTAGATCTCTAGTGCTTCATTGCACATCACTTCTCTATCTCTGACCTATTGTGCTGATGAGTGAAGTATTAATCCTTTTCGGTTGTGACTTGCTGGCTACTACTGATGGGTTGAAGTACTAAACATGCAAGCTCATAGATTCCGTGGCCTTGACATGCTAAAACAAaaaaccaaatgcatgagtaaaaatcaaactcaggaaatcgaagtatttttctc
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| CDS seq | atgggcatccaagggaacaaggcgacgacgcgcgagcacgacttcctctcgctgtacaccaccgccgctaaggatccgtctctccagctccacgacgccaagccgccgcctccttcccAaggtttcttcctgaggacgcacgacttcctgcagccgctggagaagccgacgccggcgccgacgccgcctccgacgagccagctgcagcagcagcagcagcaagcgttccccggcggcatcggaacgttcagcatcagccacgtcgccggcgcacgcccggtcgcggctgccgtcgtcaaggccgagccgacgccgttcgttctctggggccagcccgccgccgccgccgccgcgcAcccggtcgccgcactagggcaccaccaccaccaccaccagtggacgctccccttcgccggcgtcgggcaggtggccgccaccgcggcgaggcagcagcaggagtggaaggggcgagtcgggggaggcgggttcatggactctggctccagatccagtggcggcgccgggttcgacgacgacgatggcgtggccgcgcggcgtgaggtctcgtcctcgctcaaagagaggaggagggagggtaggggggaagaagggaggaggaggtcgcgtgagctcatggagatggagatggagatgtactcgcggtgcgcgcggccatcccacatccaccagctgcatgcgcgcctcgtggtctccggccgcctccgctgcacctcgccgtcgctcgcgctcgcgctgctccgcgccgcgtgccgcgtgcgcgcgtcgccgtgcctgcgtcccctcgcccaccacctgctcgaccatatcccgcgcccgcacccgcatctgctccacgcggccgctcgcctcgcgtaccgtctgcgcctgccttccctcgcgctccgccactatgtcgccctccgcacgcaccacccggtgttcctccctcccgcagcggccatcgcggacatgctcaagtctgtccgtggccgcgccgcgcatgcccacgcgctacgcgtcaccgcccacgcaggggacactaggttcctggataacacacttgtcgcgatgtactttgcctgtggagatgtccagcgcgcacggcttgtgtttgagggaatgtgtgaccgggatgtcatctcatggacatcgctaatctcaggactagtgcaaaatggcagccccttgcaaggtatacagcagtttgcaacgatgatgcactgtgatgtacgccctgactttgtggtgctagtgaccgtcgccaaggcgttcatggagcttgataacctgccaggtgctgaatcagctcattccttagttgtcaagggcggtttccatgatgaacaagatgtgatgatcacattgacagccatgtatgccagctttgggtgcttagtagctgcgagggcgctttttgacatggtcccaccccagcaggtgaatgtgatcctgtggaatgccatgatatcaggttactccaagaatggatttgccagtgaggcagtgcatttatacaagcatatgcagctggttgctaggaacttggctcccgattctatcactttgcgatcagtaatatttgcatgtgctcagcttggctccactgagcttgcggcatggatggaggattgtgtatgccgcagtgagtacagggaggatgtgcttgtgaacacagctttgattgacatgtatgccaaatcagggagcatctctcatgcacgtgcagtctttgaacggatgcatgtggatgaccgtgatgtggtagtctggagtgctttaatcacgggttatggtgtgcaaggccttgtcaatgaggcttgcactttgtttcaggacatgaagcttgctggagtaagaccaaatgacgtgacattccttggacttctatcagcatgcaaccatgcaggtgctgttgagaaaggatggagctactttcactctatgaaacctgactatggaattgagccccagcaccagcactatgcttgcgtggtagacctgctttctcgtgctggacagcttgatagagcctaccaatttatactgaatatgcccatcaaaccagagatgactgtctggggcgctttactccatggttgcaagatgcacgggcactcaaacatggccatggctgaatgcgcagcacagcacatttttgagttggagcagtccaatgcagggcactatgttcagcttgcaaacatgtatgcatctgcagggatgtggagccaagtcgctggcatgcgagtcaccatgagagagaggggtgtcaccaaggcaacggggtttagcttcatcgagttggagggtgaaatgagggtggatgggaagggtgggagctgcagtggaagtggtactgatcagcggcccagctcaccacgttcaaagcactctgctaccgagcagcgtcggcgcagcaagatcaatgacaggtttcagatacttagggagctgttacctcatagcgaccaaaAGagagacaaagcaacatttctgttagaggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtccctgaatggaaccaagaaaatgcaaagatacttccatggagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaatgggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgacatcagcagctgcctcaggggcacaagaactggtggaaactgaccatgcagctagcgtgtcctacagatcagcagaaactccgacaaacattaccaacaatgttacatcccaagcccaagcccagtgggctagtccggctggtgtggatgactgtgcaatgaacagcgaaatgttaaataaccaacagttggcaattgatgaaggaacaataagcttgtcaagccaatattcccaacagctacttggtacgttgactcatgcccttgaaagctcaggtgttgatctgtcccaatccagcatatctgtgcagatcaaccttggcaagcgagctgttaagagacctggtgctgatggatcctccagttctaaggagctccccagtacatcagcgaacaacgaaaacatgggtcaccagctgacgatgttagggggtggtactgaagaacttccacacccaacgaagcgccataaatcgggcaacagctga
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| Protein seq | MGIQGNKATTREHDFLSLYTTAAKDPSLQLHDAKPPPPSQGFFLRTHDFLQPLEKPTPAPTPPPTSQLQQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQWTLPFAGVGQVAATAARQQQEWKGRVGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLKERRREGRGEEGRRRSRELMEMEMEMYSRCARPSHIHQLHARLVVSGRLRCTSPSLALALLRAACRVRASPCLRPLAHHLLDHIPRPHPHLLHAAARLAYRLRLPSLALRHYVALRTHHPVFLPPAAAIADMLKSVRGRAAHAHALRVTAHAGDTRFLDNTLVAMYFACGDVQRARLVFEGMCDRDVISWTSLISGLVQNGSPLQGIQQFATMMHCDVRPDFVVLVTVAKAFMELDNLPGAESAHSLVVKGGFHDEQDVMITLTAMYASFGCLVAARALFDMVPPQQVNVILWNAMISGYSKNGFASEAVHLYKHMQLVARNLAPDSITLRSVIFACAQLGSTELAAWMEDCVCRSEYREDVLVNTALIDMYAKSGSISHARAVFERMHVDDRDVVVWSALITGYGVQGLVNEACTLFQDMKLAGVRPNDVTFLGLLSACNHAGAVEKGWSYFHSMKPDYGIEPQHQHYACVVDLLSRAGQLDRAYQFILNMPIKPEMTVWGALLHGCKMHGHSNMAMAECAAQHIFELEQSNAGHYVQLANMYASAGMWSQVAGMRVTMRERGVTKATGFSFIELEGEMRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVPEWNQENAKILPWSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNHNMVTSAAASGAQELVETDHAASVSYRSAETPTNITNNVTSQAQAQWASPAGVDDCAMNSEMLNNQQLAIDEGTISLSSQYSQQLLGTLTHALESSGVDLSQSSISVQINLGKRAVKRPGADGSSSSKELPSTSANNENMGHQLTMLGGGTEELPHPTKRHKSGNS |
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| Function | Pentatricopeptide repeat-containing protein At3g12770 [UniProtKB/Swiss-Prot:Q9LTV8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0013880 | OsKeNa_09g0013880.03 | Chr09 | 18644540 | 18650067 | + | NAM | ||
| CDS seq | atggactctggctccagatccagtggcggcgccgggttcgacgacgacgatggcgtggccgcgcggcgtgaggtctcgtcctcgctcaaagagaggaggagggagggtaggggggaagaagggaggaggaggtcgcgtgagctcatggagatggagatggagatgtactcgcggtgcgcgcggccatcccacatccaccagctgcatgcgcgcctcgtggtctccggccgcctccgctgcacctcgccgtcgctcgcgctcgcgctgctccgcgccgcgtgccgcgtgcgcgcgtcgccgtgcctgcgtcccctcgcccaccacctgctcgaccatatcccgcgcccgcacccgcatctgctccacgcggccgctcgcctcgcgtaccgtctgcgcctgccttccctcgcgctccgccactatgtcgccctccgcacgcaccacccggtgttcctccctcccgcagcggccatcgcggacatgctcaagtctgtccgtggccgcgccgcgcatgcccacgcgctacgcgtcaccgcccacgcaggggacactaggttcctggataacacacttgtcgcgatgtactttgcctgtggagatgtccagcgcgcacggcttgtgtttgagggaatgtgtgaccgggatgtcatctcatggacatcgctaatctcaggactagtgcaaaatggcagccccttgcaaggtatacagcagtttgcaacgatgatgcactgtgatgtacgccctgactttgtggtgctagtgaccgtcgccaaggcgttcatggagcttgataacctgccaggtgctgaatcagctcattccttagttgtcaagggcggtttccatgatgaacaagatgtgatgatcacattgacagccatgtatgccagctttgggtgcttagtagctgcgagggcgctttttgacatggtcccaccccagcaggtgaatgtgatcctgtggaatgccatgatatcaggttactccaagaatggatttgccagtgaggcagtgcatttatacaagcatatgcagctggttgctaggaacttggctcccgattctatcactttgcgatcagtaatatttgcatgtgctcagcttggctccactgagcttgcggcatggatggaggattgtgtatgccgcagtgagtacagggaggatgtgcttgtgaacacagctttgattgacatgtatgccaaatcagggagcatctctcatgcacgtgcagtctttgaacggatgcatgtggatgaccgtgatgtggtagtctggagtgctttaatcacgggttatggtgtgcaaggccttgtcaatgaggcttgcactttgtttcaggacatgaagcttgctggagtaagaccaaatgacgtgacattccttggacttctatcagcatgcaaccatgcaggtgctgttgagaaaggatggagctactttcactctatgaaacctgactatggaattgagccccagcaccagcactatgcttgcgtggtagacctgctttctcgtgctggacagcttgatagagcctaccaatttatactgaatatgcccatcaaaccagagatgactgtctggggcgctttactccatggttgcaagatgcacgggcactcaaacatggccatggctgaatgcgcagcacagcacatttttgagttggagcagtccaatgcagggcactatgttcagcttgcaaacatgtatgcatctgcagggatgtggagccaagtcgctggcatgcgagtcaccatgagagagaggggtgtcaccaaggcaacggggtttagcttcatcgagttggagggtgaaatgagggtggatgggaagggtgggagctgcagtggaagtggtactgatcagcggcccagctcaccacgttcaaagcactctgctaccgagcagcgtcggcgcagcaagatcaatgacaggtttcagatacttagggagctgttacctcatagcgaccaaaAGagagacaaagcaacatttctgttagaggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtccctgaatggaaccaagaaaatgcaaagatacttccatggagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaatgggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgacatcagcagctgcctcaggggcacaagaactggtggaaactgaccatgcagctagcgtgtcctacagatcagcagaaactccgacaaacattaccaacaatgttacatcccaagcccaagcccagtgggctagtccggctggtgtggatgactgtgcaatgaacagcgaaatgttaaataaccaacagttggcaattgatgaaggaacaataagcttgtcaagccaatattcccaacagctacttggtacgttgactcatgcccttgaaagctcaggtgttgatctgtcccaatccagcatatctgtgcagatcaaccttggcaagcgagctgttaagagacctggtgctgatggatcctccagttctaaggagctccccagtacatcagcgaacaacgaaaacatgggtcaccagctgacgatgttagggggtggtactgaagaacttccacacccaacgaagcgccataaatcgggcaacagctga
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| Protein seq | MDSGSRSSGGAGFDDDDGVAARREVSSSLKERRREGRGEEGRRRSRELMEMEMEMYSRCARPSHIHQLHARLVVSGRLRCTSPSLALALLRAACRVRASPCLRPLAHHLLDHIPRPHPHLLHAAARLAYRLRLPSLALRHYVALRTHHPVFLPPAAAIADMLKSVRGRAAHAHALRVTAHAGDTRFLDNTLVAMYFACGDVQRARLVFEGMCDRDVISWTSLISGLVQNGSPLQGIQQFATMMHCDVRPDFVVLVTVAKAFMELDNLPGAESAHSLVVKGGFHDEQDVMITLTAMYASFGCLVAARALFDMVPPQQVNVILWNAMISGYSKNGFASEAVHLYKHMQLVARNLAPDSITLRSVIFACAQLGSTELAAWMEDCVCRSEYREDVLVNTALIDMYAKSGSISHARAVFERMHVDDRDVVVWSALITGYGVQGLVNEACTLFQDMKLAGVRPNDVTFLGLLSACNHAGAVEKGWSYFHSMKPDYGIEPQHQHYACVVDLLSRAGQLDRAYQFILNMPIKPEMTVWGALLHGCKMHGHSNMAMAECAAQHIFELEQSNAGHYVQLANMYASAGMWSQVAGMRVTMRERGVTKATGFSFIELEGEMRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVPEWNQENAKILPWSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNHNMVTSAAASGAQELVETDHAASVSYRSAETPTNITNNVTSQAQAQWASPAGVDDCAMNSEMLNNQQLAIDEGTISLSSQYSQQLLGTLTHALESSGVDLSQSSISVQINLGKRAVKRPGADGSSSSKELPSTSANNENMGHQLTMLGGGTEELPHPTKRHKSGNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0013880 | OsKeNa_09g0013880.01 | Chr09 | 18642716 | 18650067 | + | NAM | ||
| CDS seq | atgggcatccaagggaacaaggcgacgacgcgcgagcacgacttcctctcgctgtacaccaccgccgctaaggatccgtctctccagctccacgacgccaagccgccgcctccttcccAaggtttcttcctgaggacgcacgacttcctgcagccgctggagaagccgacgccggcgccgacgccgcctccgacgagccagctgcagcagcagcagcagcaagcgttccccggcggcatcggaacgttcagcatcagccacgtcgccggcgcacgcccggtcgcggctgccgtcgtcaaggccgagccgacgccgttcgttctctggggccagcccgccgccgccgccgccgcgcAcccggtcgccgcactagggcaccaccaccaccaccaccagtggacgctccccttcgccggcgtcgggcaggtggccgccaccgcggcgaggcagcagcaggagtggaaggggcgagtcgggggaggcgggttcatggactctggctccagatccagtggcggcgccgggttcgacgacgacgatggcgtggccgcgcggcgtgaggtctcgtcctcgctcaaagagaggaggagggagggtaggggggaagaagggaggaggaggtcgcgtgagctcatggagatggagatggagatgtactcgcggtgcgcgcggccatcccacatccaccagctgcatgcgcgcctcgtggtctccggccgcctccgctgcacctcgccgtcgctcgcgctcgcgctgctccgcgccgcgtgccgcgtgcgcgcgtcgccgtgcctgcgtcccctcgcccaccacctgctcgaccatatcccgcgcccgcacccgcatctgctccacgcggccgctcgcctcgcgtaccgtctgcgcctgccttccctcgcgctccgccactatgtcgccctccgcacgcaccacccggtgttcctccctcccgcagcggccatcgcggacatgctcaagtctgtccgtggccgcgccgcgcatgcccacgcgctacgcgtcaccgcccacgcaggggacactaggttcctggataacacacttgtcgcgatgtactttgcctgtggagatgtccagcgcgcacggcttgtgtttgagggaatgtgtgaccgggatgtcatctcatggacatcgctaatctcaggactagtgcaaaatggcagccccttgcaaggtatacagcagtttgcaacgatgatgcactgtgatgtacgccctgactttgtggtgctagtgaccgtcgccaaggcgttcatggagcttgataacctgccaggtgctgaatcagctcattccttagttgtcaagggcggtttccatgatgaacaagatgtgatgatcacattgacagccatgtatgccagctttgggtgcttagtagctgcgagggcgctttttgacatggtcccaccccagcaggtgaatgtgatcctgtggaatgccatgatatcaggttactccaagaatggatttgccagtgaggcagtgcatttatacaagcatatgcagctggttgctaggaacttggctcccgattctatcactttgcgatcagtaatatttgcatgtgctcagcttggctccactgagcttgcggcatggatggaggattgtgtatgccgcagtgagtacagggaggatgtgcttgtgaacacagctttgattgacatgtatgccaaatcagggagcatctctcatgcacgtgcagtctttgaacggatgcatgtggatgaccgtgatgtggtagtctggagtgctttaatcacgggttatggtgtgcaaggccttgtcaatgaggcttgcactttgtttcaggacatgaagcttgctggagtaagaccaaatgacgtgacattccttggacttctatcagcatgcaaccatgcaggtgctgttgagaaaggatggagctactttcactctatgaaacctgactatggaattgagccccagcaccagcactatgcttgcgtggtagacctgctttctcgtgctggacagcttgatagagcctaccaatttatactgaatatgcccatcaaaccagagatgactgtctggggcgctttactccatggttgcaagatgcacgggcactcaaacatggccatggctgaatgcgcagcacagcacatttttgagttggagcagtccaatgcagggcactatgttcagcttgcaaacatgtatgcatctgcagggatgtggagccaagtcgctggcatgcgagtcaccatgagagagaggggtgtcaccaaggcaacggggtttagcttcatcgagttggagggtgaaatgagggtggatgggaagggtgggagctgcagtggaagtggtactgatcagcggcccagctcaccacgttcaaagcactctgctaccgagcagcgtcggcgcagcaagatcaatgacaggtttcagatacttagggagctgttacctcatagcgaccaaaAGagagacaaagcaacatttctgttagaggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtccctgaatggaaccaagaaaatgcaaagatacttccatggagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaatgggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgacatcagcagctgcctcaggggcacaagaactggtggaaactgaccatgcagctagcgtgtcctacagatcagcagaaactccgacaaacattaccaacaatgttacatcccaagcccaagcccagtgggctagtccggctggtgtggatgactgtgcaatgaacagcgaaatgttaaataaccaacagttggcaattgatgaaggaacaataagcttgtcaagccaatattcccaacagctacttggtacgttgactcatgcccttgaaagctcaggtgttgatctgtcccaatccagcatatctgtgcagatcaaccttggcaagcgagctgttaagagacctggtgctgatggatcctccagttctaaggagctccccagtacatcagcgaacaacgaaaacatgggtcaccagctgacgatgttagggggtggtactgaagaacttccacacccaacgaagcgccataaatcgggcaacagctga
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| Protein seq | MGIQGNKATTREHDFLSLYTTAAKDPSLQLHDAKPPPPSQGFFLRTHDFLQPLEKPTPAPTPPPTSQLQQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQWTLPFAGVGQVAATAARQQQEWKGRVGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLKERRREGRGEEGRRRSRELMEMEMEMYSRCARPSHIHQLHARLVVSGRLRCTSPSLALALLRAACRVRASPCLRPLAHHLLDHIPRPHPHLLHAAARLAYRLRLPSLALRHYVALRTHHPVFLPPAAAIADMLKSVRGRAAHAHALRVTAHAGDTRFLDNTLVAMYFACGDVQRARLVFEGMCDRDVISWTSLISGLVQNGSPLQGIQQFATMMHCDVRPDFVVLVTVAKAFMELDNLPGAESAHSLVVKGGFHDEQDVMITLTAMYASFGCLVAARALFDMVPPQQVNVILWNAMISGYSKNGFASEAVHLYKHMQLVARNLAPDSITLRSVIFACAQLGSTELAAWMEDCVCRSEYREDVLVNTALIDMYAKSGSISHARAVFERMHVDDRDVVVWSALITGYGVQGLVNEACTLFQDMKLAGVRPNDVTFLGLLSACNHAGAVEKGWSYFHSMKPDYGIEPQHQHYACVVDLLSRAGQLDRAYQFILNMPIKPEMTVWGALLHGCKMHGHSNMAMAECAAQHIFELEQSNAGHYVQLANMYASAGMWSQVAGMRVTMRERGVTKATGFSFIELEGEMRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVPEWNQENAKILPWSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNHNMVTSAAASGAQELVETDHAASVSYRSAETPTNITNNVTSQAQAQWASPAGVDDCAMNSEMLNNQQLAIDEGTISLSSQYSQQLLGTLTHALESSGVDLSQSSISVQINLGKRAVKRPGADGSSSSKELPSTSANNENMGHQLTMLGGGTEELPHPTKRHKSGNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0013880 | OsKeNa_09g0013880.02 | Chr09 | 18642724 | 18650208 | + | NAM | ||
| CDS seq | atgggcatccaagggaacaaggcgacgacgcgcgagcacgacttcctctcgctgtacaccaccgccgctaaggatccgtctctccagctccacgacgccaagccgccgcctccttcccAaggtttcttcctgaggacgcacgacttcctgcagccgctggagaagccgacgccggcgccgacgccgcctccgacgagccagctgcagcagcagcagcagcaagcgttccccggcggcatcggaacgttcagcatcagccacgtcgccggcgcacgcccggtcgcggctgccgtcgtcaaggccgagccgacgccgttcgttctctggggccagcccgccgccgccgccgccgcgcAcccggtcgccgcactagggcaccaccaccaccaccaccagtggacgctccccttcgccggcgtcgggcaggtggccgccaccgcggcgaggcagcagcaggagtggaaggggcgagtcgggggaggcgggttcatggactctggctccagatccagtggcggcgccgggttcgacgacgacgatggcgtggccgcgcggcgtgaggtctcgtcctcgctcaaagagttgacagtgagggtggatgggaagggtgggagctgcagtggaagtggtactgatcagcggcccagctcaccacgttcaaagcactctgctaccgagcagcgtcggcgcagcaagatcaatgacaggtttcagatacttagggagctgttacctcatagcgaccaaaAGagagacaaagcaacatttctgttagaggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtccctgaatggaaccaagaaaatgcaaagatacttccatggtcaaacatatattttagatcgttctggaaaaattcacaaagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaatgggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgacatcagcagctgcctcaggggcacaagaactggtggaaactgaccatgcagctagcgtgtcctacagatcagcagaaactccgacaaacattaccaacaatgttacatcccaagcccaagcccagtgggctagtccggctggtgtggatgactgtgcaatgaacagcgaaatgttaaataaccaacagttggcaattgatgaaggaacaataagcttgtcaagccaatattcccaacagctacttggtacgttgactcatgcccttgaaagctcaggtgttgatctgtcccaatccagcatatctgtgcagatcaaccttggcaagcgagctgttaagagacctggtgctgatggatcctccagttctaaggagctccccagtacatcagcgaacaacgaaaacatgggtcaccagctgacgatgttagggggtggtactgaagaacttccacacccaacgaagcgccataaatcgggcaacagctga
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| Protein seq | MGIQGNKATTREHDFLSLYTTAAKDPSLQLHDAKPPPPSQGFFLRTHDFLQPLEKPTPAPTPPPTSQLQQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQWTLPFAGVGQVAATAARQQQEWKGRVGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVPEWNQENAKILPWSNIYFRSFWKNSQSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNHNMVTSAAASGAQELVETDHAASVSYRSAETPTNITNNVTSQAQAQWASPAGVDDCAMNSEMLNNQQLAIDEGTISLSSQYSQQLLGTLTHALESSGVDLSQSSISVQINLGKRAVKRPGADGSSSSKELPSTSANNENMGHQLTMLGGGTEELPHPTKRHKSGNS
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0013880 | OsKeNa_09g0013880.04 | Chr09 | 18646753 | 18646958 | + | IsoSeq | ||
| CDS seq | attcgccatgctgtgccttcTttctccaactccaaccggagttggagggtgaaagttgttgagtgc |
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| Protein seq | IRHAVPSFSNSNRSWRVKVVEC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr09 | 18648229 | 18648468 | + | OsKeNa_09g0013880.02 | OsKeNa_09g0013880.01,OsKeNa_09g0013880.02,OsKeNa_09g0013880.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.196499 | 3.273451 | 2.605831 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0475400 | RBH | 1.134988 | 1.025089 | 11.719073 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29930 | RBH | 0.920965 | 0.778831 | 3.836612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0475400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013930 | RBH | 0.254851 | 11.295045 | 10.531012 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020220 | RBH | 0.100864 | 6.036835 | 3.754782 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014140 | RBH | 0.302429 | 4.914339 | 10.240294 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013970 | RBH | 0.195270 | 0.531742 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0014070 | RBH | 3.157628 | 19.980104 | 29.878998 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0304300 | RBH | 4.6311245 | 34.922676 | 15.0022835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013970 | RBH | 0.057790 | 0.993194 | 2.045240 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0294400 | RBH | 11.120422 | 21.8080915 | 34.4692145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013960 | RBH | 0.167618 | 0.147028 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013770 | RBH | 0.164754 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013850 | RBH | 0.0 | 10.366259 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013730 | RBH | 0.000000 | 0.0 | 2.630902 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013790 | RBH | 0.264418 | 2.584506 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014270 | RBH | 0.984545 | 1.975440 | 3.044482 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0014050 | RBH | 0.819912 | 8.114318 | 6.516021 |
