Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0011340 | OGI:09047040 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:16416168-16417694 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggatttcaccaacccgacagggttgatgccgccgccgccttcgccgcctagttcatcctcaactcatccaaatgaatacagagttagttttaagatgctttctctctcacacgcaactatcgacagcctggacatggtgctcatatggcccattccggcccactcactctaggattacatactcggtgcctaacaggtcttccttccttagtctgcttaacctccttggtcttgacagtgttctgtagctcatccggtacaactgtgttgctgacaagcaggttcatcacgatggacaagtcttgttgctgtgtacatatatacaaggggtagagcatgtcaagaaacacaatgtaatttgttaccggtactaattgctgtagcacaagctgcatagaacaatgtcaggcaaattataaacctcaactttgagcaatgtcagtcaggtggagtgaatcacattagtactggttcagcgtcggaggagttgacggcgttcagcgtcgccgcgtcgacgcggctgtccatgttgaagctgatcggcaccacctcgtcgtcgacgtagtacgtgttccgcagtgacgcaagcagccgccgcagcgacttggcgcggttctgcgtgatggtgttcaccgagatccgcatcctgttccagtctgcgtgaaatccatagatcggttagagctttgatgtagtttttggttgcaacaatggcggatgagagctttgaggtagaataagcttactgggcagcgaggtggggctgagggtggccatccagagaaccttggagatggagttgctgacttcgatgttggctcagcccaggaacactctcacactcacgaacacaaacgccggtgagggagacgatgaacaatggattttacagcgacgaacgccgcggagccgatcgctcctgtatcttggctttattcctcactgaaccttgcaaagaaacaacgacggagtacaggggcctcttatagaccggtgacacaccgggagctagcctccatgccggccattgcgccacgttccgcagaacccgctcgacgtcgccgtgagccacacgctcgcccggacgacgcggcttcctccgcaagaaccgacgccacgcacaccacgcactcccacgactcgatcaacactgcaacggccatgcaaacaaccatgcagcagccatgcactcgcgatcacgactcaatcaaactaacagaacgcacacgacgcacacatgcagcagcacgacacacacacacactgactcaaccacgccaggaatacaccatgacgtgtttatttccaacattcgacaccaagctcaaggccaacggcgccgacctcccggactacttcgtcctcaccctcctcactgtcatccacgccatcctcccgcagccctccgactcctgcaaccctagctctgcgtcgcagcccgccgaagagtattgcgcagcggccagcggccagcggcagtctccgcccccctcgccggccaacgcctttttccctctccgtgcgcgc
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| CDS seq | atggccggcatggaggctagctcccggtgtgtcaccgactggaacaggatgcggatctcggtgaacaccatcacgcagaaccgcgccaagtcgctgcggcggctgcttgcgtcactgcggaacacgtactacgtcgacgacgaggtggtgccgatcagcttcaacatggacagccgcgtcgacgcggcgacgctgaacgccgtcaactcctccgacgctgaaccagtactaatgtga |
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| Protein seq | MAGMEASSRCVTDWNRMRISVNTITQNRAKSLRRLLASLRNTYYVDDEVVPISFNMDSRVDAATLNAVNSSDAEPVLM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0011340 | OsKeNa_09g0011340.01 | Chr09 | 16416624 | 16417694 | - | NAM | ||
| CDS seq | atggccggcatggaggctagctcccggtgtgtcaccgactggaacaggatgcggatctcggtgaacaccatcacgcagaaccgcgccaagtcgctgcggcggctgcttgcgtcactgcggaacacgtactacgtcgacgacgaggtggtgccgatcagcttcaacatggacagccgcgtcgacgcggcgacgctgaacgccgtcaactcctccgacgctgaaccagtactaatgtga
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| Protein seq | MAGMEASSRCVTDWNRMRISVNTITQNRAKSLRRLLASLRNTYYVDDEVVPISFNMDSRVDAATLNAVNSSDAEPVLM |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0011340 | OsKeNa_09g0011340.02 | Chr09 | 16416168 | 16417119 | - | IsoSeq | ||
| CDS seq | atgagctacagaacactgtcaagaccaaggaggttaagcagactaaggaaggaagacctgttaggcaccgagtatgtaatccta |
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| Protein seq | MSYRTLSRPRRLSRLRKEDLLGTEYVIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 21.035473 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0434600 | RBH | 0.0 | 0.0 | 13.638093 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g26440 | RBH | 0.0 | 0.0 | 4.917833 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0434600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0011400 | RBH | 0.000000 | 0.0 | 14.090714 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0032250 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0011600 | RBH | 0.0 | 0.0 | 76.544128 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011370 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0265800 | RBH | 0.0115295 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011520 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0255700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0011280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0011170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0011270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011780 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011580 | RBH | 0.0 | 9.316464 | 1.203919 |
