Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0010440 | OGI:09044460 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:15483802-15485016 | ||||||||
| Gene Symbol | CIPK27, OsCIPK27, OsSnRK3.30, SnRK3.30 | ||||||||||
| DNA seq | atggaggggaagggggtgctggaggggaggtacgagatggggcgggtgctgggccacggcaacttcgggcgggtgcacgcggcgcgggacgtgcgcacGgggcgcgccgtggcgatgaaggtggtgtcaaaggacaaggtggagcgcgccgggatggcggagcagatcaagcgggagatcgccgtgatgaagatggtgtcccacccgagcgtcgtggagctgcacgaggtgatggccacgCgcaccaaggtgtacctggcgctcgagctcgtccggggcggcgagctgttcgaccggatcgcccgccacggccgcgtcggggagggcgtcgcgcggaggtacttccgccagctcgtctccgccgtcgacttctgccacggccgcggggtgtaccaccgcgacctgaagcccgagaacCTGctgctcgacgaggccgggaacctcaaggtcgccgacttcgggctcagcgcgctcgcctgccacgcgcgccccgacggcctcctccacaccgcctgcggcacgccggcgtacgtcgcccccgaggtgctcgccggcaacggctacgacggcgccaaggccgacctctggtcctgcggcgtcatcctctacgtgctgctcgccggcgcgctgccgttccaggacgacaacctcgtgtgcatgtaccgcaagatgcggcggggtgacttctgctgcccgccgtgggtgacgacggacgcccggaagctcatcaagacgctgctcgaccccaacccggacacccgcgtcaccgtcgccggcctcctcgagacgccgtggttccgcaagacggcgcccgtcccgcgccccatcatcgccgaccccgcgccggcgccggtggacccgcgtggcaatgctggcgacgacaaggacgagccgcccgaggtgctgaacgccttccacctgatctccctgtccgagggcttcgacctgtcgccgctgttcgagcacgaccccgccgcgtcgccggggcgggccacggcgcgcgcgggcggcacgcggttcgcgacgcgggaggcggcgagcggcgtggtcgcgcggctggaggcgctcgcgatgggcggcgcacgcgtggcgccgtcgttgctcatggtggacgtcaagaaggatggcggcgacgccatggagtaccggccgttcttcagtgaggagctccggccggcgctcaaggacatcgtctggtcgccggcggcgacctga
More
|
||||||||||
| CDS seq | atggaggggaagggggtgctggaggggaggtacgagatggggcgggtgctgggccacggcaacttcgggcgggtgcacgcggcgcgggacgtgcgcacGgggcgcgccgtggcgatgaaggtggtgtcaaaggacaaggtggagcgcgccgggatggcggagcagatcaagcgggagatcgccgtgatgaagatggtgtcccacccgagcgtcgtggagctgcacgaggtgatggccacgCgcaccaaggtgtacctggcgctcgagctcgtccggggcggcgagctgttcgaccggatcgcccgccacggccgcgtcggggagggcgtcgcgcggaggtacttccgccagctcgtctccgccgtcgacttctgccacggccgcggggtgtaccaccgcgacctgaagcccgagaacCTGctgctcgacgaggccgggaacctcaaggtcgccgacttcgggctcagcgcgctcgcctgccacgcgcgccccgacggcctcctccacaccgcctgcggcacgccggcgtacgtcgcccccgagacggcgcccgtcccgcgccccatcatcgccgaccccgcgccggcgccggtggacccgcgtggcaatgctggcgacgacaaggacgagccgcccgagctccggccggcgctcaaggacatcgtctggtcgccggcggcgacctga
More
|
||||||||||
| Protein seq | MEGKGVLEGRYEMGRVLGHGNFGRVHAARDVRTGRAVAMKVVSKDKVERAGMAEQIKREIAVMKMVSHPSVVELHEVMATRTKVYLALELVRGGELFDRIARHGRVGEGVARRYFRQLVSAVDFCHGRGVYHRDLKPENLLLDEAGNLKVADFGLSALACHARPDGLLHTACGTPAYVAPETAPVPRPIIADPAPAPVDPRGNAGDDKDEPPELRPALKDIVWSPAAT |
||||||||||
| Function | Putative CBL-interacting protein kinase 27 [UniProtKB/Swiss-Prot:Q6ERS0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0010440 | OsKeNa_09g0010440.01 | Chr09 | 15483802 | 15485016 | + | NAM | ||
| CDS seq | atggaggggaagggggtgctggaggggaggtacgagatggggcgggtgctgggccacggcaacttcgggcgggtgcacgcggcgcgggacgtgcgcacGgggcgcgccgtggcgatgaaggtggtgtcaaaggacaaggtggagcgcgccgggatggcggagcagatcaagcgggagatcgccgtgatgaagatggtgtcccacccgagcgtcgtggagctgcacgaggtgatggccacgCgcaccaaggtgtacctggcgctcgagctcgtccggggcggcgagctgttcgaccggatcgcccgccacggccgcgtcggggagggcgtcgcgcggaggtacttccgccagctcgtctccgccgtcgacttctgccacggccgcggggtgtaccaccgcgacctgaagcccgagaacCTGctgctcgacgaggccgggaacctcaaggtcgccgacttcgggctcagcgcgctcgcctgccacgcgcgccccgacggcctcctccacaccgcctgcggcacgccggcgtacgtcgcccccgagacggcgcccgtcccgcgccccatcatcgccgaccccgcgccggcgccggtggacccgcgtggcaatgctggcgacgacaaggacgagccgcccgagctccggccggcgctcaaggacatcgtctggtcgccggcggcgacctga
More
|
|||||||
| Protein seq | MEGKGVLEGRYEMGRVLGHGNFGRVHAARDVRTGRAVAMKVVSKDKVERAGMAEQIKREIAVMKMVSHPSVVELHEVMATRTKVYLALELVRGGELFDRIARHGRVGEGVARRYFRQLVSAVDFCHGRGVYHRDLKPENLLLDEAGNLKVADFGLSALACHARPDGLLHTACGTPAYVAPETAPVPRPIIADPAPAPVDPRGNAGDDKDEPPELRPALKDIVWSPAAT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0418500 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25100 | RBH | 0.0 | 0.0 | 0.099101 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0418500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010480 | RBH | 0.0 | 0.0 | 0.250854 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017420 | RBH | 0.080190 | 0.0 | 1.589258 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010730 | RBH | 0.0 | 0.0 | 0.422467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0252600 | RBH | 1.7524775 | 1.3447865 | 3.10507 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010580 | RBH | 0.0 | 0.0 | 0.074631 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0239000 | RBH | 3.5973075 | 0.2133965 | 14.6720115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010290 | RBH | 0.202551 | 0.0 | 0.127118 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010830 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010630 | RBH | 0.000000 | 0.0 | 0.000000 |
