Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0008260 | OGI:09037290 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:12796045-12801790 | ||||||||
| Gene Symbol | TPS11, OsTPS11 | ||||||||||
| DNA seq | caatgaatcatggcagaagaagagcaccacatttccaaagtactttttccaacagacatacatatacatgatgcaaatctaaagttctaaactagactcttaaaagagaatgttggattcaagccaagagctgtacattcatgtctttccttcctcctgcaaggctcttgcaggagcctctcttttctttttttgtttttacccccaatcagaattgcctgcaagttcatcaaaactactagtttttgtttcgttgatggcgatgcttcatggtggctgattacctgattgcgaaccctgggcagttttcatcgttttcgcgatgacgagtagtagtccttggtgatttgacaatatcatgctgaccgcgttttcgctgctaatagattcaatgtaacagatcatggttcagctgacaacctcaagtatatccctgaatgttacttgactctggctgatcacctcccttcggggtgtaatggcggttacacccttgagtaatctgatcacctcactgcacccatccacatagtacttcgctttgctagccttctggccaacagagcaggcaaagacatctggagcagtaggaaacacagaacgtgagacggcttcattgatgctctcaaacatgtcctcgtccgatcgatcgttaccaatgcacatcagaaaatccggtgcgttttcgttgttgattaccgtccgaatgactgtgtccacagcaatccccttgctaacaccctgtaagagtgaatgaatgaatgatgtatttgttcaggtactgcaagtctcaacaagcatgtgcaagataaaatatgtcaaatggttgcgggaaaagaaatctgagcgatacaaacctggggcttaacttctacgatttgatgaccacgtttaaccacaacaggttcatttgccagcaccctctcaagatgactcactagctccttcgcctggcatgaaccgaagtcatgatctgcatcctgataatgccaaactagcccactctcctttgtctctatggcagacccatcggttgtttccttgtatacttccatgataggctcggcgatgttcttccattcacaatcttgagctgaggagcttgtttcccattcaccttctttgttccacctgtaagaacaagcacagtttatcagtcaacatgtgttcgggcttctgaatactgggaaaattacataatggtgtatatatatgaaaaaaaatactatgatcttaagcacctgataaaatagccatgttcagctgcaataccaagcttatcacatgaagcaaaccactcacttagggtagtacgatctcttccgctgactatgaacacacagttctttggatcattgcacaagcttgtaaggatagaaatgacttctgcacttggaactttgttgactgatgactgggggacaagggtgccatcataatccataaatatcagccttctattagtcttcttataagaagaagcaaagtgttccaaagatagccttctaaatccaggagaaagagcaatgactctaaaattcaaaccaaacccagtggtccaacaccttcggctatagtgatccttgcacgctctatctagatcttgggaaaaactgcgcgcccagtaagcaacgtcatgagttttgacgtagcgataatgcttatcatgacgcaatttcctctccgattgagtcaaatccattgctttatataatgcatcagctacatcttcaatactccaaggatttaccctgaaagcaccactaagtgatggggagcaaccaacaaactcagacacaattagtgtgcttgtgtgatgtgagctcttatcaacacctctgagcttatcaatctcctcatttccctgcctgcagacagtatactcatatggtatcaagttcatcccatccctcacagcatttacaatacagcaatcagatgcagcatagtatgcaatcttctcataagaaggtatggggtagtcgataaggatgacaggcttgtactcagcagaaccatacttaatgtttatcctttcagctacagagacggcttcatttattgcttcctccacatcttttccagtgcttcttgcaggatttataatctgcacaaggacaaccttccctcttagctttggagttctctccaaaagaaattccaagccaagcaattttagactgatccctttgaagatatccatatcatctacacccaacatcaccatcttacccttatatctttgctcaatttcttgaaccttgctaattgtggcaggcagcctcaacacagactcaagacgaccaacatgtacacccacagcaaggatcttgaggctcaccgtacggccaaagtactctataccgatgtgaccacgttttgactcgtaattaaggcctaacaatctgctgcaacatgaaaggaagtggcgggcatagtcaaatgtttgaaagccaatgagatcagcattcagaagagacttcaaaatttcatctcttactggcagtgtcctatagatttcagaggagggaaatggactgtgaaggaagaaaccaattttgatgcgatgaagcttttttcttaaaaaggttgggagaagcatgaggtgataatcatgaacccacacacagtcatcatctgaattgatggcctccataactttgtcaccaaatattttgtttgcccgaacataggcttgaaatagagagcggtcaaagagctcgcctttgtcgaggcaaataggaagcatataatggaaaagtggccataattgttgtttacagaatccatgatagaactgctgctggaggtcagctgggaggaaagtaggtatgcatttgtattctctgaaaagtttctgtgaaagttgatcttgctcaccaggatcaacttcagcgttcaagctacccacataaacaacttcgctctccattggaaatccatctttaagttgaacaagaagttgattgtcatccattgagaaggaccactgtccagtagcttcatctttggtacagtttagtggaagaaagttggagacgattattttccttacacagcaagatgcaggaccaactgaatcatcagcattacttgtatcccaatcaggattagatgtgatgcttggggaagtcacaaaacgaggaagcgatctaaatggttgctgaaagtcaaacacatcttcaccactcatatctagaagatttgtatatgactttgaaaccatgattccacaaccttttgcaacaaagaaaacatcaaagaatacattttagtcctttgaaataaatacatgttctagcaggggcattaaattacaaaaatattatgatgaagccatagttattttatcgaacgcagaaacactagtaagctcatttctatgtaaattatttggttaactaaaatattaattatatatcacaaaactatgacacgtgatatagactatcaaaacagagaccaaaaaagaattcctttttaaaaacaagcctcaatatggtggatcctaattacaacaaagctggaaccattgagtgttacaaggcaaacataaccataaaagcttcttaagatgtatttttaagtcgaattttggattttgaaggataaaaaatctatgtagtatcctttcaaaaaaaaatctatgtagtatgttagagcctagagcacactgccagttgtgcaggtcaatttatctaagttgaaaaactaactttatacataactgctatccattctcaatagttgcatggaagctcacaaaactgcctagtcaattttcagggaatttatgtttgaacaccaaaataaaattagttcccaCaagagagcacatggaacaaaattctccactggatgtataggtgataaagaataaagagactgctaatcacaatttacttattgtgtcaaatggcttatttgctccaggggaaaagatgtgccgacatgtaaactgttctttcactgtaaatggaaacatctcattttttttttcatgacaatgagctctccaaagatccaaaatgaagcacatctacttcttgtttaggaccacaaatatccactccaaacatcatttaagaacattgaaccacactctcctaccaaaataacacaaaagtacgaattcaaggaccaccaccttccattagcatgacacaaacaacatgcaatctaatcatttccccttctaagttctagccaatcataaatataggcatataactatagtataatgttacctttgataccaaaatgtatctaccagtgttacctggcatacagaacttgcaattaagtcaatggaaccagcttatagaaacttcaatacctacccagtgaaatctatcctaaaacatattagcatagaccaaagacgagcaacgtgaccaaaggaaacttaatctatccaaattgcatccatcctacagcggaaatactgtcctgaatgcaactggcattatcattaacttgatcagtgtttgtccaaaagtccattctatttgcatgctccattacagtctctcacaggacaacaactatgcctgatatactattgactgagttcaataaagcttccattatctaaaaaataaaaaaaaatactaccattcggtgtggctgtgagctgtatcctgagagcacacctaactggaccaaggtcataccacaagaaggtactacttgaattattgaattcaatgtgccatgaattatatccgggaaattaaattgtcccggagacaacatcacctgcctacttccctaaaattgcccataattgtgagaccacaagcaaaaactcaatcgtcaccatatcacacatcagtcagatgagaagaactactcttataacttcatgctcttgatatgatatgaactttaagggctacccagagatgttgtcccagaactacctatatcatctcaccttgaataatttcttttggaatgagtctaccatccagatcatttcttggggttaaataacaagggtgatataaatcacaaacagttcataccactacatggcaatagcatgacggctaaaagatttgtgctaccttttttccccctcttgcagttaagataactgccaattgctacacgtaaatgcaaatgataagcactaagtgcactcaggtAaaaaaaaaaaagcagtagcaaaaaagAaaaaaaaaaagaagcccccttttcagtgcacaccaacatttcatcccccaacccaacgcctaaaaccacatcaattcccctgcaggcaaaactaatggcgtaaaagaacaaaaaaaaaatcggcgaagaacataaaatcgatcaaaactaaaaccccaaaggaccaagatcgttcctttcctccactaatccccatctcgacacccaaaaaaaacaccctttttttttccaaacaaggcgaaaaccaagtcaagagcagaaacggagggggatcaataaggagagcgaccgattctcacctccaccgcggcagatagattcagcgcatccagatgagatggcggcgtttcttggctgcttcttctgcttccttcctcgagattttctttgcctcctgcttctgcttctgctcccacccaccaccaccactatcagcagcaacagcagcagcagccaaacctcgaatcgagtagaggaagtaggagaagaagagacagcaagaacacagacaaatgtggtggagttgagagagagagagagagaggagaagaaatgtttgtaagactcg
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| CDS seq | atggtttcaaagtcatatacaaatcttctagatatgagtggtgaagatgtgtttgactttcagcaaccatttagatcgcttcctcgttttgtgacttccccaagcatcacatctaatcctgattgggatacaagtaatgctgatgattcagttggtcctgcatcttgctgtgtaaggaaaataatcgtctccaactttcttccactaaactgtaccaaagatgaagctactggacagtggtccttctcaatggatgacaatcaacttcttgttcaacttaaagatggatttccaatggagagcgaagttgtttatgtgggtagcttgaacgctgaagttgatcctggtgagcaagatcaactttcacagaaacttttcagagaatacaaatgcatacctactttcctcccagctgacctccagcagcagttctatcatggattctgtaaacaacaattatggccacttttccattatatgcttcctatttgcctcgacaaaggcgagctctttgaccgctctctatttcaagcctatgttcgggcaaacaaaatatttggtgacaaagttatggaggccatcaattcagatgatgactgtgtgtgggttcatgattatcacctcatgcttctcccaacctttttaagaaaaaagcttcatcgcatcaaaattggtttcttccttcacagtccatttccctcctctgaaatctataggacactgccagtaagagatgaaattttgaagtctcttctgaatgctgatctcattggctttcaaacatttgactatgcccgccacttcctttcatgttgcagcagattgttaggccttaattacgagtcaaaacgtggtcacatcggtatagagtactttggccgtacggtgagcctcaagatccttgctgtgggtgtacatgttggtcgtcttgagtctgtgttgaggctgcctgccacaattagcaaggttcaagaaattgagcaaagatataagggtaagatggtgatgttgggtgtagatgatatggatatcttcaaagggatcagtctaaaattgcttggcttggaatttcttttggagagaactccaaagctaagagggaaggttgtccttgtgcagattataaatcctgcaagaagcactggaaaagatgtggaggaagcaataaatgaagccgtctctgtagctgaaaggataaacattaagtatggttctgctgagtacaagcctgtcatccttatcgactaccccataccttcttatgagaagattgcatactatgctgcatctgattgctgtattgtaaatgctgtgagggatgggatgaacttgataccatatgagtatactgtctgcaggcagggaaatgaggagattgataagctcagaggtgttgataagagctcacatcacacaagcacactaattgtgtctgagtttgttggttgctccccatcacttagtggtgctttcagggtaaatccttggagtattgaagatgtagctgatgcattatataaagcaatggatttgactcaatcggagaggaaattgcgtcatgataagcattatcgctacgtcaaaactcatgacgttgcttactgggcgcgcagtttttcccaagatctagatagagcgtgcaaggatcactatagccgaaggtgttggaccactgggtttggtttgaattttagagtcattgctctttctcctggatttagaaggctatctttggaacactttgcttcttcttataagaagactaatagaaggctgatatttatggattatgatggcacccttgtcccccagtcatcagtcaacaaagttccaagtgcagaagtcatttctatccttacaagcttgtgcaatgatccaaagaactgtgtgttcatagtcagcggaagagatcgtactaccctaagtgagtggtttgcttcatgtgataagcttggtattgcagctgaacatggctattttatcaggtggaacaaagaaggtgaatgggaaacaagctcctcagctcaagattgtgaatggaagaacatcgccgagcctatcatggaagtatacaaggaaacaaccgatgggtctgccatagagacaaaggagagtgggctagtttggcattatcaggatgcagatcatgacttcggttcatgccaggcgaaggagctagtgagtcatcttgagagggtgctggcaaatgaacctgttgtggttaaacgtggtcatcaaatcgtagaagttaagccccagggtgttagcaaggggattgctgtggacacagtcattcggacggtaatcaacaacgaaaacgcaccggattttctgatgtgcattggtaacgatcgatcggacgaggacatgtttgagagcatcaatgaagccgtctcacgttctgtgtttcctactgctccagatgtctttgcctgctctgttggccagaaggctagcaaagcgaagtactatgtggatgggtgcagtgaggtgatcagattactcaagggtgtaaccgccattacaccccgaagggaggtgatcagccagagtcaagtaacattcagggatatacttgaggttgtcagctga
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| Protein seq | MVSKSYTNLLDMSGEDVFDFQQPFRSLPRFVTSPSITSNPDWDTSNADDSVGPASCCVRKIIVSNFLPLNCTKDEATGQWSFSMDDNQLLVQLKDGFPMESEVVYVGSLNAEVDPGEQDQLSQKLFREYKCIPTFLPADLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKIFGDKVMEAINSDDDCVWVHDYHLMLLPTFLRKKLHRIKIGFFLHSPFPSSEIYRTLPVRDEILKSLLNADLIGFQTFDYARHFLSCCSRLLGLNYESKRGHIGIEYFGRTVSLKILAVGVHVGRLESVLRLPATISKVQEIEQRYKGKMVMLGVDDMDIFKGISLKLLGLEFLLERTPKLRGKVVLVQIINPARSTGKDVEEAINEAVSVAERINIKYGSAEYKPVILIDYPIPSYEKIAYYAASDCCIVNAVRDGMNLIPYEYTVCRQGNEEIDKLRGVDKSSHHTSTLIVSEFVGCSPSLSGAFRVNPWSIEDVADALYKAMDLTQSERKLRHDKHYRYVKTHDVAYWARSFSQDLDRACKDHYSRRCWTTGFGLNFRVIALSPGFRRLSLEHFASSYKKTNRRLIFMDYDGTLVPQSSVNKVPSAEVISILTSLCNDPKNCVFIVSGRDRTTLSEWFASCDKLGIAAEHGYFIRWNKEGEWETSSSAQDCEWKNIAEPIMEVYKETTDGSAIETKESGLVWHYQDADHDFGSCQAKELVSHLERVLANEPVVVKRGHQIVEVKPQGVSKGIAVDTVIRTVINNENAPDFLMCIGNDRSDEDMFESINEAVSRSVFPTAPDVFACSVGQKASKAKYYVDGCSEVIRLLKGVTAITPRREVISQSQVTFRDILEVVS |
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| Function | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [UniProtKB/Swiss-Prot:O80738] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0008260 | OsKeNa_09g0008260.01 | Chr09 | 12796045 | 12801790 | - | NAM | ||
| CDS seq | atggtttcaaagtcatatacaaatcttctagatatgagtggtgaagatgtgtttgactttcagcaaccatttagatcgcttcctcgttttgtgacttccccaagcatcacatctaatcctgattgggatacaagtaatgctgatgattcagttggtcctgcatcttgctgtgtaaggaaaataatcgtctccaactttcttccactaaactgtaccaaagatgaagctactggacagtggtccttctcaatggatgacaatcaacttcttgttcaacttaaagatggatttccaatggagagcgaagttgtttatgtgggtagcttgaacgctgaagttgatcctggtgagcaagatcaactttcacagaaacttttcagagaatacaaatgcatacctactttcctcccagctgacctccagcagcagttctatcatggattctgtaaacaacaattatggccacttttccattatatgcttcctatttgcctcgacaaaggcgagctctttgaccgctctctatttcaagcctatgttcgggcaaacaaaatatttggtgacaaagttatggaggccatcaattcagatgatgactgtgtgtgggttcatgattatcacctcatgcttctcccaacctttttaagaaaaaagcttcatcgcatcaaaattggtttcttccttcacagtccatttccctcctctgaaatctataggacactgccagtaagagatgaaattttgaagtctcttctgaatgctgatctcattggctttcaaacatttgactatgcccgccacttcctttcatgttgcagcagattgttaggccttaattacgagtcaaaacgtggtcacatcggtatagagtactttggccgtacggtgagcctcaagatccttgctgtgggtgtacatgttggtcgtcttgagtctgtgttgaggctgcctgccacaattagcaaggttcaagaaattgagcaaagatataagggtaagatggtgatgttgggtgtagatgatatggatatcttcaaagggatcagtctaaaattgcttggcttggaatttcttttggagagaactccaaagctaagagggaaggttgtccttgtgcagattataaatcctgcaagaagcactggaaaagatgtggaggaagcaataaatgaagccgtctctgtagctgaaaggataaacattaagtatggttctgctgagtacaagcctgtcatccttatcgactaccccataccttcttatgagaagattgcatactatgctgcatctgattgctgtattgtaaatgctgtgagggatgggatgaacttgataccatatgagtatactgtctgcaggcagggaaatgaggagattgataagctcagaggtgttgataagagctcacatcacacaagcacactaattgtgtctgagtttgttggttgctccccatcacttagtggtgctttcagggtaaatccttggagtattgaagatgtagctgatgcattatataaagcaatggatttgactcaatcggagaggaaattgcgtcatgataagcattatcgctacgtcaaaactcatgacgttgcttactgggcgcgcagtttttcccaagatctagatagagcgtgcaaggatcactatagccgaaggtgttggaccactgggtttggtttgaattttagagtcattgctctttctcctggatttagaaggctatctttggaacactttgcttcttcttataagaagactaatagaaggctgatatttatggattatgatggcacccttgtcccccagtcatcagtcaacaaagttccaagtgcagaagtcatttctatccttacaagcttgtgcaatgatccaaagaactgtgtgttcatagtcagcggaagagatcgtactaccctaagtgagtggtttgcttcatgtgataagcttggtattgcagctgaacatggctattttatcaggtggaacaaagaaggtgaatgggaaacaagctcctcagctcaagattgtgaatggaagaacatcgccgagcctatcatggaagtatacaaggaaacaaccgatgggtctgccatagagacaaaggagagtgggctagtttggcattatcaggatgcagatcatgacttcggttcatgccaggcgaaggagctagtgagtcatcttgagagggtgctggcaaatgaacctgttgtggttaaacgtggtcatcaaatcgtagaagttaagccccagggtgttagcaaggggattgctgtggacacagtcattcggacggtaatcaacaacgaaaacgcaccggattttctgatgtgcattggtaacgatcgatcggacgaggacatgtttgagagcatcaatgaagccgtctcacgttctgtgtttcctactgctccagatgtctttgcctgctctgttggccagaaggctagcaaagcgaagtactatgtggatgggtgcagtgaggtgatcagattactcaagggtgtaaccgccattacaccccgaagggaggtgatcagccagagtcaagtaacattcagggatatacttgaggttgtcagctga
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| Protein seq | MVSKSYTNLLDMSGEDVFDFQQPFRSLPRFVTSPSITSNPDWDTSNADDSVGPASCCVRKIIVSNFLPLNCTKDEATGQWSFSMDDNQLLVQLKDGFPMESEVVYVGSLNAEVDPGEQDQLSQKLFREYKCIPTFLPADLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVRANKIFGDKVMEAINSDDDCVWVHDYHLMLLPTFLRKKLHRIKIGFFLHSPFPSSEIYRTLPVRDEILKSLLNADLIGFQTFDYARHFLSCCSRLLGLNYESKRGHIGIEYFGRTVSLKILAVGVHVGRLESVLRLPATISKVQEIEQRYKGKMVMLGVDDMDIFKGISLKLLGLEFLLERTPKLRGKVVLVQIINPARSTGKDVEEAINEAVSVAERINIKYGSAEYKPVILIDYPIPSYEKIAYYAASDCCIVNAVRDGMNLIPYEYTVCRQGNEEIDKLRGVDKSSHHTSTLIVSEFVGCSPSLSGAFRVNPWSIEDVADALYKAMDLTQSERKLRHDKHYRYVKTHDVAYWARSFSQDLDRACKDHYSRRCWTTGFGLNFRVIALSPGFRRLSLEHFASSYKKTNRRLIFMDYDGTLVPQSSVNKVPSAEVISILTSLCNDPKNCVFIVSGRDRTTLSEWFASCDKLGIAAEHGYFIRWNKEGEWETSSSAQDCEWKNIAEPIMEVYKETTDGSAIETKESGLVWHYQDADHDFGSCQAKELVSHLERVLANEPVVVKRGHQIVEVKPQGVSKGIAVDTVIRTVINNENAPDFLMCIGNDRSDEDMFESINEAVSRSVFPTAPDVFACSVGQKASKAKYYVDGCSEVIRLLKGVTAITPRREVISQSQVTFRDILEVVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.333476 | 18.558184 | 3.031433 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0376800 | RBH | 1.799217 | 1.561692 | 4.876482 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g20990 | RBH | 1.004567 | 0.741449 | 1.222668 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0376800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008280 | RBH | 1.129033 | 150.378448 | 8.923131 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015880 | RBH | 0.038942 | 3.586939 | 0.990241 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008490 | RBH | 1.525671 | 67.701050 | 10.497167 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008290 | RBH | 0.409980 | 2.174828 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008440 | RBH | 3.914344 | 46.535583 | 22.630320 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0214700 | RBH | 16.372571 | 210.131981 | 68.971563 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008380 | RBH | 1.385407 | 7.566149 | 2.811238 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0195600 | RBH | 22.5780525 | 179.9499055 | 38.927166 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008370 | RBH | 0.409111 | 3.126382 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008180 | RBH | 0.320912 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008080 | RBH | 2.621655 | 130.912766 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008110 | RBH | 1.500571 | 0.0 | 1.540345 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008130 | RBH | 1.478742 | 44.711834 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008680 | RBH | 1.016310 | 8.862929 | 6.228409 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008480 | RBH | 3.512552 | 253.120712 | 17.931427 |
