Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0004740 | OGI:09022560 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:8005830-8009602 | ||||||||
| Gene Symbol | OsMYBc, MYBc, OsROC1 | ||||||||||
| DNA seq | aggcccaggtagaaaggctggcacaggcacccagcagcagagggccacacacacctacgcctacgcggggaagagaagacgagacaagaagaggagaggagagaagagaatctcgtggaattctctccccctctcctcgcctctccaagaacccaccaatcctcccccccctccccccccaacactccactggcgccgcacagctccgatcttgcctccgccgccgccttcttccgctcccaattcgggcccgaattcggtccggggggggtttcttggtgcgtcagcgtttccccccccccccccccccccaaaatttactttgcctctgtagagagaattcccggtaaatttgtgcgtgtttttttgctttccgtgttgagatgttattgctctcgcttttgttcccccaatggaaaagggaaaaaatgcaagcgaggagaggaaaaaaaaaagggcttcctgaggctgacaggtcgggcccacctccgccggagatggcgtgtggcttgcgctgtttgtgatgagttctctggtggtagtaggttggcatatacggggtgctctttgctttgagcatggagctgcaattcgctttgctttgatttcatctttttctactgtgcaattgaagggcatcaagaacatcatgtatcaaagctaatttcatatgtctggcgataggttgtgtgggttgctcccatggagctctttaccttttttttgcctggttataaattgagagcaaaataaataaatactaatggatgataattcgattgatgcaccatgcaagctgtggatgcaagtattcgccttaactatgtatgctggctggttttctgttagagctttgcatctaccatttttatgggtcactctatttgcctaaccttccatgtaaagcagtatggtatgatgaatcaaattggatagatgtattggacagcgttgcacacgctagttttcttggtacaaatggcattttccttgtctatactagtactagtagttctttcctctgcaacaatgaaaacttccctatgtagttaagctcacaaattctagaaacacttgtgactgtcttagagatggacagaaaactgccactgcaactttgcactgattagttgtgtttttgtacttttatcaccggcaaacattgtttgtgatcgctgtttgtaaaactgatatctggctctctgatgtattttttcccaggtgatgatcattgtattaaccaaaacctgaacctagtgttggccctactgtaataattcagtcacttatcagcagcatatggaattaggtggcaacaatatgggcccagataatggagcaaacaacaattccaacttggctgcaaggcaacgcttacggtggacaaatgagctgcacgaacgatttgttgaggctgttactcaacttggtggtcctgatagtatgtattcatactgcaattgttgcaattatgttttcatttattcatttatttgattttatcaaacttatatagagactgttctgtatgatgcttttcttggagacaataactttactgcatgcatgtaatcatgctctcttaccattgaacttattaactgtaaatttctgcttctgctaacacttgaattcctcaaatgcaacaggagcaactccgaaaggagttctaagaattatgggtgtacaagggttgacgatataccatgtgaaaagtcatttgcaggtacatcttgttacagtgtgtcactttccctttaatattttttgtagctagtattttttttatcctatttaattcccctcctgtttctagaaatacaggcttgcaaagtacattcccgactcttcagctgatggtacgcggacaatctcttcatcatgcattgcattttttagtactctggcattcttttagcttatcctaatttttgtctccttggtaggtaacaaggctgaaaacaaagaccctggagatttgcttgctggacttgagggatcctcgtaagtatacataagcctaattatttctccgatatcatatcagtcgttttgtaaaaagaaaaaagaaatgctactgacatactgttatggtatgaaatggaagtatgctggtttgccacattttaccatttaccagtaaatctaccatgaccaactattgaaattattaccattgttgtttgcatgctgccatgctgctcggcaaatatcgctttctagattgtagtccctctgtagttgaaagtatcaaggaataataggctgctgctggattgagattgaaactactactagtattttacacataatttcttctgcccaccatttttggctttcaacatcctcaagaacataaatcctagatactagaaaacaacaaaatatgtgaaataacttaagtctgattaatatgctttttccttttagttgaaaaaattaagtcatttgttattgtgctttctatttatcttctgtaagatttcaatgcctatttatcttttcaatggacagttccattatgttactgttcgattggtgctgttctccacctcaatagtcaatattcatcgtgatattttttttgtacagtggcttacagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagttagaagtaagtttttgtggaagttcctttcagcataaaattgttagcttctaacatttgtactccatccttatatatttattaagcctattccgaagttactaaaatattccaaatctatgcaaagaaattgttctggatgcacatattcttcaaatctttgtgaaatatccagcaaagagcaggccctaatgatatgataaacattctcttcaggtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcattgaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtcacattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacctacatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaagcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgattccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagaggcaacgaggtaatggtgcagagttctcggaaactgacttcgcccttcctcattctatcttcgagtcgagttcggggtcagagttccaacaatgttccatgtcctactcaggtcattagcatctggtgatactcctcacagcatcttcgctagcttgttcgagacgaagtaatgatctaagatccgtgttgtagctctcagtagtatatttctaagtcccaatggagatgttggtagacaaaaatgttgtaggtgttcagatgattgtttacatgatactacatatgacagctatttaagcttgtaatttcgtggcctgtaaattttattatcagctgttgagttgggaagtttgaaggttgcgctttgtcgcggcgtcgacttctgctcatctgggtaaatctttattgacaaaagtgtttaacatgaacaatttttcgcgtgtaatttgttgtaaacttgtaatggtcagtggtcagaagcacaagctgttgatgttatgctgttacacttggatgttactatcatggttacttttctcca
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| CDS seq | atggaattaggtggcaacaatatgggcccagataatggagcaaacaacaattccaacttggctgcaaggcaacgcttacggtggacaaatgagctgcacgaacgatttgttgaggctgttactcaacttggtggtcctgatagagcaactccgaaaggagttctaagaattatgggtgtacaagggttgacgatataccatgtgaaaagtcatttgcagaaatacaggcttgcaaagtacattcccgactcttcagctgatggtaacaaggctgaaaacaaagaccctggagatttgcttgctggacttgagggatcctctggcttacagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagttagaagtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcattgaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtcacattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacctacatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaagcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgattccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagaggcaacgaggtaatggtgcagagttctcggaaactgacttcgcccttcctcattctatcttcgagtcgagttcggggtcagagttccaacaatgttccatgtcctactcaggtcattag
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| Protein seq | MELGGNNMGPDNGANNNSNLAARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAKYIPDSSADGNKAENKDPGDLLAGLEGSSGLQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVKSETPAAGASVTLPSDQFPDSERTDPSTPAPTSESPTQGVPSNRDNGGQNEATKSPQRDDSLSRHEPLTPDSNCQPGSPTASPKHERAAKRQRGNGAEFSETDFALPHSIFESSSGSEFQQCSMSYSGH |
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| Function | Myb family transcription factor PHL7 [UniProtKB/Swiss-Prot:Q9SJW0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0004740 | OsKeNa_09g0004740.02 | Chr09 | 8005830 | 8009602 | + | NAM | ||
| CDS seq | atggaattaggtggcaacaatatgggcccagataatggagcaaacaacaattccaacttggctgcaaggcaacgcttacggtggacaaatgagctgcacgaacgatttgttgaggctgttactcaacttggtggtcctgatagagcaactccgaaaggagttctaagaattatgggtgtacaagggttgacgatataccatgtgaaaagtcatttgcagaaatacaggcttgcaaagtacattcccgactcttcagctgatggtaacaaggctgaaaacaaagaccctggagatttgcttgctggacttgagggatcctctggcttacagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagttagaagtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcattgaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtcacattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacctacatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaagcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgattccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagaggcaacgaggtaatggtgcagagttctcggaaactgacttcgcccttcctcattctatcttcgagtcgagttcggggtcagagttccaacaatgttccatgtcctactcaggtcattag
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| Protein seq | MELGGNNMGPDNGANNNSNLAARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAKYIPDSSADGNKAENKDPGDLLAGLEGSSGLQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVKSETPAAGASVTLPSDQFPDSERTDPSTPAPTSESPTQGVPSNRDNGGQNEATKSPQRDDSLSRHEPLTPDSNCQPGSPTASPKHERAAKRQRGNGAEFSETDFALPHSIFESSSGSEFQQCSMSYSGH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0004740 | OsKeNa_09g0004740.01 | Chr09 | 8005830 | 8009602 | + | NAM | ||
| CDS seq | atggaattaggtggcaacaatatgggcccagataatggagcaaacaacaattccaacttggctgcaaggcaacgcttacggtggacaaatgagctgcacgaacgatttgttgaggctgttactcaacttggtggtcctgatagagcaactccgaaaggagttctaagaattatgggtgtacaagggttgacgatataccatgtgaaaagtcatttgcagaaatacaggcttgcaaagtacattcccgactcttcagctgatggtaacaaggctgaaaacaaagaccctggagatttgcttgctggacttgagggatcctctggcttacagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagttagaagtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcattgaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtcacattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacctacatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaagcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgattccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagaggcaacgaggtcattag
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| Protein seq | MELGGNNMGPDNGANNNSNLAARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAKYIPDSSADGNKAENKDPGDLLAGLEGSSGLQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVKSETPAAGASVTLPSDQFPDSERTDPSTPAPTSESPTQGVPSNRDNGGQNEATKSPQRDDSLSRHEPLTPDSNCQPGSPTASPKHERAAKRQRGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr09 | 8008702 | 8009602 | + | OsKeNa_09g0004740.02 | OsKeNa_09g0004740.02,OsKeNa_09g0004740.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.358230 | 6.465178 | 3.814595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0299200 | RBH | 3.040518 | 2.454595 | 6.653647 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g12770 | RBH | 2.030928 | 1.639526 | 1.751279 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0299200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004710 | RBH | 2.086783 | 5.637535 | 10.734320 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012750 | RBH | 0.159189 | 0.809706 | 1.994832 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004830 | RBH | 3.615027 | 11.147479 | 12.444651 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004610 | RBH | 0.238725 | 0.229795 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004660 | RBH | 9.248245 | 23.189291 | 28.397907 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0128900 | RBH | 11.4272145 | 22.956809 | 27.916666 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004800 | RBH | 0.679746 | 1.355454 | 1.958560 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0122700 | RBH | 16.231778 | 19.030427 | 17.404029 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004790 | RBH | 0.822577 | 0.223362 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004660 | RBH | 1.116856 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004730 | RBH | 10.136429 | 36.803993 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004530 | RBH | 2.118873 | 0.0 | 2.501864 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004570 | RBH | 1.139761 | 8.279952 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004870 | RBH | 1.022679 | 2.625747 | 5.113484 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004720 | RBH | 2.227724 | 19.577091 | 13.984538 |
