Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0001950 | OGI:08012090 | 2/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:4116644-4117480 | ||||||||
| Gene Symbol | TPS10, OsTPS10 | ||||||||||
| DNA seq | tcagtccacataatccatcacatccctgaagatcacacgtccatggctgacggcctcccggtgcgacgaaatgccggctacattctcgagcaatcttactacttcaccaacattgttgacatagtactttgctttgctgggtttctgaccaactgaacaggcaaagacctctggaactgcagggaatgcggagctggaggtcatgctgtcgatgcttttgaacgtgtcctcatcagatcgatcgttaccgatgcacactacgaaatccagcgtcttcccgttgttcatcaatctgtgaattaccttgtccacaacaagacccttgctaactccctgcacaagtaatgtatttcatttagtgtgagctggacataatgagttgaaagtgaaaaaatgtagtaataaattcaaatggtatagacctgtggtttgacttctacaatgtaatgaccacacttcacaacaacaggttcatttgatagcaccctttcaagatgacccagtagttcctttgcttggcaggaaccaaagtcatggtctgcatccagataatgccataatagagcactttcctttggctctatggaggacccatcagttgtttcgatgtaaacttgcatgaccggttcagcgatgtgcttccactcaaaatcatggtttggatagcttgattcccattcagctgctttgttccatctgacagaacataaacagttcatcatactcctgaataattcaactgtacaattgcataatagtgtgtggagaaaatacaaataaaaacatatttaagaagaaaaaaaagtactcaaaatgtttacctgacaaaatagccat
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| CDS seq | atggctattttgtcagttgaattattcaggagtatgatgaactgtttatgttctgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacatcgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgactttggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtggtcattacattgtagaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacacgttcaaaagcatcgacagcatgacctccagctccgcattccctgcagttccagaggtctttgcctgttcagttggtcagaaacccagcaaagcaaagtactatgtcaacaatgttggtgaagtagtaagattgctcgagaatgtagccggcatttcgtcgcaccgggaggccgtcagccatggacgtgtgatcttcagggatgtgatggattatgtggactga
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| Protein seq | MAILSVELFRSMMNCLCSVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYIETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFVVCIGNDRSDEDTFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVNNVGEVVRLLENVAGISSHREAVSHGRVIFRDVMDYVD |
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| Function | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [UniProtKB/Swiss-Prot:O80738] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0001950 | OsKeNa_09g0001950.01 | Chr09 | 4116644 | 4117480 | - | NAM | ||
| CDS seq | atggctattttgtcagttgaattattcaggagtatgatgaactgtttatgttctgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacatcgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgactttggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtggtcattacattgtagaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacacgttcaaaagcatcgacagcatgacctccagctccgcattccctgcagttccagaggtctttgcctgttcagttggtcagaaacccagcaaagcaaagtactatgtcaacaatgttggtgaagtagtaagattgctcgagaatgtagccggcatttcgtcgcaccgggaggccgtcagccatggacgtgtgatcttcagggatgtgatggattatgtggactga
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| Protein seq | MAILSVELFRSMMNCLCSVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYIETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFVVCIGNDRSDEDTFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVNNVGEVVRLLENVAGISSHREAVSHGRVIFRDVMDYVD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.533720 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0397300 | SBH | 0.640926 | 0.883825 | 4.528063 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32130 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0397300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001980 | RBH | 0.0 | 0.000000 | 1.901373 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0021260 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008490 | SBH | 1.525671 | 67.701050 | 10.497167 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008290 | SBH | 0.409980 | 2.174828 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008440 | SBH | 3.914344 | 46.535583 | 22.630320 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0379000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008380 | SBH | 1.385407 | 7.566149 | 2.811238 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0401200 | SBH | 1.013017 | 2.000736 | 0.1181385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008370 | SBH | 0.409111 | 3.126382 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008180 | SBH | 0.320912 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008080 | SBH | 2.621655 | 130.912766 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0020740 | SBH | 0.0 | 0.0 | 1.948722 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008130 | SBH | 1.478742 | 44.711834 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G021090 | SBH | 1.891782 | 4.333445 | 3.464704 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008480 | SBH | 3.512552 | 253.120712 | 17.931427 |
