Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0000740 | OGI:09003150 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:1444813-1448529 | ||||||||
| Gene Symbol | OsCBSX2 | ||||||||||
| DNA seq | aattaaacgtaggctctaacttataaatttaccttttacaaccttgttcgttgtataatctaaacattggaaaatattttcacttcaacccagatgcggaaggtatcatcatatcagaagtgttacatttcaatacactgatgttcttgaatacaagtcaatgataaaagtaaaaataaaaataataacattctccatgttatgctacctaataaggagaggcgaccaaatctggtggccccaaacagattgcggctatattccaaacatctgcaacaatacaatacctatatccatctatgttccaagaagaattgactgtcgaattcgcagtatctgtaaggctgatgtagttcatttcaccaaataatgtttcagtggactaaatttccaagtgactgcagtcccagaaatgccttataaagaatcatctacactgtctaatttaagcagtttcttcagctgtcttctttattttgagggcagctctgacaacagtcccccttgtgatcatcccaaccttgagaaaagaaactttacttaagactagatactactgaaacgaaagcggaaggaaggaaaggcagatcaactcaccaatttaccagtgctatcaacaacaggcaatctgcgatatttggtttcaagtagcaacctgaaacaaatgaacaccaatcgtgatgtctgataataaattggtagacgtggtcctgagaactaatggactgtttgtaggtaccttgtagcagcatcaaggttggtactttcacgaaccgcaagaggcgaataagtcatcacatcagcgatgactttgccattggttttgctcaagagtctctgtatctcgcgaaatgtctgtacagcgatcgtaatgagtctaatatattaacgtgtgaaataaaaaataattgataaagatAaaaaaaaaagatctgttactacaaacaatatgtggagcatgactaattatttatttaaatgctagaaacaatatatttaccaaattgaagtactaaattgtggttcagactaatgcatgaagagtgaagaataccaagattttaaagatcattactggggtgtgctacaaaatgggtggtaaatactgttacaaaatatatgtaaggtatacgggatttagtatttaacccaatactgactaagcatcctaagttgagaggtaacaacattcttgatagggaaaacaagtgacaatttgctggacctaacacagtccattacatcagccactatgcaaggtacacttctactttattatttagtcaaacagcattttgtcataacatgtgaaggttctttgtggtgggaacattttatttaaggaggatcattgcttctgaatatagaaactggggattttccatgattaaaaattgcttttattccaaaccagaccattccatcctaacacctggcagtaggtggtaaagataacccaatctaagaaaatggtgcatagctagaaaatatatatataaaaacatgtaacattctatctttattagaacataccttccaagtactatccacctcaggaaacatgcttgtgtttgtgccagtcagtccacttcctgaaagaatggatttaaaataccaccaatgtaagaatacaaggattatggcatttactacccaacagtatactttcaaaaaataagttaaatagctcaagttaatctttgcagcttagagttccagaaaagttgcagtgtgggcaaagcttttgttgcattcagaatttcagatcaaagttatggttgctatggtttaaacaaggtttggttgtaggtatgcaaaagattatatggtccaagccgccactacttatggttctttctagttgtgatcctgcctatcaggctatcaagatattgacaaatgaccaccatgtatgactgcaagcagatggttagatggtagtgcaatggtgtgttaatgacaaatactaggcttatgcagtttagaggatgcaatattgtactagtaatatgaatttgttgtaagcaagtgatttgaaggtccaagaaggaatacctgatattgagtcaagtgctaacagatcataatctgagacaacacccacctgcaggtggaagtaagattgagtggcagaatgagaaatcagatacaattcaaccataatgtcaatgtaatgtttcttaagacacaacataatagaggagatcaaaaggcccgcatgtcatggggacaaggacaccgttttatgaatcagcactacattctagatgtgagcattccaagatctctaaatcctttaggtagaatcaccatactagttcgaatttagcatgtaaaaaggtataaagtttgaaaccgtgtttgagaaagaaaatatcctagaatcatgttactgagataactatttagcaataaatcatttccccttgagaaaagcccaacgttgttgacttgtaagcataactgttttgagaataaaaattgcagagagtaagtagaaaaagattgaatagagtgaagttttgatgggcactaaccaactttccggtgtcgtcaacaacagggaaaccagagatcttgtgttgcaccagcgtctcgagagctgtaaaaacgaacagaataataagttggcgatttggtttagcagcaagcatagttaggacatacttcatattatagaagtagagaagaaggtagtaccttcatcaaccgaggttgcaggtgtaacgacatggagattaggccttttggtcatgaagtcaccaactgtgtagactccgttgttgtgctgaaggaggaagatggtgcatctcatcagaaattaataatgattaatttgaaactttatagttcatccatgtatactcctagcatactcctatacagtatgtatgaatatattcgaagtaaaataaatcagtttggagaattaatgggaaaatcatttatgacgaatttttgggaaacaatgaatagatattcctcccactaacacaaaagaaaaggaatagatatttcagttagaggaatacagacagcttcatgaaattccaagagaaaaggaagaaaggtacacatatggttgagatttgagaagaagcactaatttgagatgagcacacaacaataacaacagcagcaacaaagcactaattaaatagagtactatttgggatgggagcggtgttgtgtagtccagcaaaaaaagaggaaaaaagatgaatatatagcccccccccccccccaaaaaaaaaaaaaaagcagcagcagtaagtagatgttgttaaggaagctgttgatttggtgagggagggggggaaggggaaagggggggccgaatgaatgaagtggattataccgcggcgggcgcgggggcagcgggagcggcgtaggcgcggaggggcccgcaggcgcaggaggacgggagggggagggtactggggcggtggaggcgagggcgaggcggaggcgcagtggtggtggagcggacggcgacggcggcatcggcggagcggagcagcgtggcgtccatggctatggctaatccaattccaagtagcgcgcgaagggaagggaagggaagggaaggcgtaggtaatggaaaggccaaggcgtggtgggaggtggctatggcttcctctccgccgcttgcgcttgcgcttggagcaaactaaacggaacggatggatggagcgaagcggtgaaatagctatagct
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| CDS seq | atggacgccacgctgctccgctccgccgatgccgccgtcgccgtccgctccaccaccactgcgcctccgcctcgccctcgcctccaccgccccagtaccctccccctcccgtcctcctgcgcctgcgggcccctccgcgcctacgccgctcccgctgcccccgcgcccgccgcgcacaacaacggagtctacacagttggtgacttcatgaccaaaaggcctaatctccatgtcgttacacctgcaacctcggttgatgaagctctcgagacgctggtgcaacacaagatctctggtttccctgttgttgacgacaccggaaagttggtgggtgttgtctcagattatgatctgttagcacttgactcaatatcaggaagtggactgactggcacaaacacaagcatgtttcctgaggtggatagtacttggaagacatttcgcgagatacagagactcttgagcaaaaccaatggcaaagtcatcgctgatgtgatgacttattcgcctcttgcggttcgtgaaagtaccaaccttgatgctgctacaaggttgctacttgaaaccaaatatcgcagattgcctgttgttgatagcactggtaaattggttgggatgatcacaagggggactgttgtcagagctgccctcaaaataaagaagacagctgaagaaactgcttaa
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| Protein seq | MDATLLRSADAAVAVRSTTTAPPPRPRLHRPSTLPLPSSCACGPLRAYAAPAAPAPAAHNNGVYTVGDFMTKRPNLHVVTPATSVDEALETLVQHKISGFPVVDDTGKLVGVVSDYDLLALDSISGSGLTGTNTSMFPEVDSTWKTFREIQRLLSKTNGKVIADVMTYSPLAVRESTNLDAATRLLLETKYRRLPVVDSTGKLVGMITRGTVVRAALKIKKTAEETA |
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| Function | CBS domain-containing protein CBSX1, chloroplastic [UniProtKB/Swiss-Prot:O23193] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0000740 | OsKeNa_09g0000740.01 | Chr09 | 1444813 | 1448529 | - | NAM | ||
| CDS seq | atggacgccacgctgctccgctccgccgatgccgccgtcgccgtccgctccaccaccactgcgcctccgcctcgccctcgcctccaccgccccagtaccctccccctcccgtcctcctgcgcctgcgggcccctccgcgcctacgccgctcccgctgcccccgcgcccgccgcgcacaacaacggagtctacacagttggtgacttcatgaccaaaaggcctaatctccatgtcgttacacctgcaacctcggttgatgaagctctcgagacgctggtgcaacacaagatctctggtttccctgttgttgacgacaccggaaagttggtgggtgttgtctcagattatgatctgttagcacttgactcaatatcaggaagtggactgactggcacaaacacaagcatgtttcctgaggtggatagtacttggaagacatttcgcgagatacagagactcttgagcaaaaccaatggcaaagtcatcgctgatgtgatgacttattcgcctcttgcggttcgtgaaagtaccaaccttgatgctgctacaaggttgctacttgaaaccaaatatcgcagattgcctgttgttgatagcactggtaaattggttgggatgatcacaagggggactgttgtcagagctgccctcaaaataaagaagacagctgaagaaactgcttaa
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| Protein seq | MDATLLRSADAAVAVRSTTTAPPPRPRLHRPSTLPLPSSCACGPLRAYAAPAAPAPAAHNNGVYTVGDFMTKRPNLHVVTPATSVDEALETLVQHKISGFPVVDDTGKLVGVVSDYDLLALDSISGSGLTGTNTSMFPEVDSTWKTFREIQRLLSKTNGKVIADVMTYSPLAVRESTNLDAATRLLLETKYRRLPVVDSTGKLVGMITRGTVVRAALKIKKTAEETA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.706064 | 4.411889 | 8.753319 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0115500 | RBH | 55.279457 | 56.704788 | 5.465141 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g02710 | RBH | 35.269833 | 35.513447 | 1.373873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0115500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0000760 | RBH | 4.724246 | 9.618008 | 10.886127 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011130 | RBH | 2.186818 | 1.776685 | 6.695078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0000760 | RBH | 11.015974 | 8.301328 | 20.348463 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000690 | RBH | 1.346811 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0000880 | RBH | 46.162472 | 2.224937 | 42.875946 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0014900 | RBH | 28.536645 | 18.2691495 | 2.7379945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0000880 | RBH | 3.315950 | 0.0 | 2.146742 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0025200 | RBH | 25.6505735 | 13.294095 | 4.5629725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0000830 | RBH | 2.434513 | 0.078877 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0000800 | RBH | 3.902728 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000920 | RBH | 73.147293 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0000810 | RBH | 10.537862 | 0.0 | 4.728470 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0000840 | RBH | 4.754282 | 1.051287 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G000890 | RBH | 4.545854 | 0.0 | 3.571124 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0000850 | RBH | 19.627804 | 4.015017 | 20.600384 |
