Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0024350 | OGI:08078230 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:28646658-28649522 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acggccacgagcacgagcacgagcaccacctcccccttccactccaccacgcaacgcgcgacctcagctcagctgcgcgtccgcggattcggggttatgggcatcgatcgtgcccactcccccgccatcgccgccgccgccgcgatttaagcaatccaaacgagcgagcgagcaaatcttgtcgaacaccagatcccccaagctcaatcattcaatcaaccgtgtgagtcgttcttgattcgattttcgagatggattcacggatgctgctgatgctgatgcagctgctcggctccccgacatcgctcgccgttctcctcctctccttcttccaaggtcagtcacttccattgctgggttactatctactggagctcgcgatttggagcttgacttgattctttcttggggtttgggggattcgattcctcttcctccgcgcgcgcaggctcggtcggcgtcggcgcaatcaccttcaccttcaccaaccggtgcacggacacggtgtggccgggggtgctgtcgggctccggcacgccgccgctggagaccaccggcttcgcgctctcgccgggggggtcgcgctccctctacgcgccgtcggggtggtcgggccgcttctgggcgcgctccggctgcgaattcgacgactccggcaagggctcctgcgccacgggggactgcggctccggccaggtggagtgccgcggcgcgggcgcctccccgcccgccacgctcgccgagttcaccctcaacggcgccgacggcaaggacttctacgacgtcagcctcgtcgacggctacaacctccccatgctcgtccaggcctccgcccccgactgccccgacaccggctgcctcgtcgacctcaacgagcgctgcccctccgagctccgcgccgacgatggccgcgcttgccgcagcgcctgcgaggcgttcggccgacctgagtactgctgcaatggcgcctacggcaacccggacacctgccacccttcccagtactcgcagctcttcaagtcggcgtgccctaaatcctacagctacgcctacgacgacgccacctccaccttcacctgcaaccacaccgattacaccatcaccttctgcccccgatccactccatccaggtttgtacacttcaaatcaatcgcagcgaatccattgcattgagatttcgattaccagtatgagatttttatgtgtatgatagaattgtatagtggactgattgcagcacattgagattttgggctaaaattggggatttcgatgtggaacatgaattggggaaagtaaaggttcattgaggatgtgatagagttaggctaagaaaaggaggagcaatctttttctcctttgattcgtccccacttcactcacattgtacctaagctggccttgactggaaagttgcaatttcctagtaggcatggaaggaacttgcaacagcaaattctcatcatcagtttcaggttgattaactgtttcatgaatttggtatgtttgcagtgggaattcaaagaacggatcacggagaccgagccacgagcagctcgaagatgcggtgtggctggcgagcttgaaggccagcagtggcgcggggatggctgcaactgcggcatcatggccggcatccttagctttccaatctgccttggcaattgcagtggtgatcctgcttgcccagcaggagcatcccgtattattcagctagtagcaagtgagaaggattcttgatcggtagtaggagtgatcaaaagggggagacgtggagagcacattctttaggactttttgtttgtggatagagaatgcaggcgtcctcaacctcaagtttggcagttgtagttgctgctcagcttaagtgtttgctttgctttatttgcctttcagaaaaccttgctattctagttacattctttgctgtgcttaattttttgggggtcctgatcaatgtggactccagatgcactgctttgaatctaaacgagaagagcatatgatctgatattctgatctggtaagctccttttttttttctttctgaaagtttgagcaagacgcacagcaagtagcacaatctgagattctctcttgtctttatagagaggataagaatcactttggaggtaaactgggaagagtaatacagatcctgtttgtctcagatgtatacctgataagaattttgagggtttgttggtataattaaccaaccaatcaatcattctgatctgcaatgaaagggtgtctgaactctgaagaaacaagatgcaaaaggaattctgaatgtggtgaaggcaaaagggggaggcataggcaaaagatgtgagttgtgctcatcaatgacaatgaaaagcagaatattgaacctactttggtatgtgataaccttagtgttaagctagcacacacctgaagaaaatgccctgtaaagggaaagggcttatgagcctggatctctgctttcatatggttatgcttcaggtggccattttgtgtcggccaacggccatcatcacatgagttccttgatttttatgcaagaggtgaggaagaagccccatcttacataacagtgacagcgtgaagaacaagtccccgcaagagatgatctcatcttctatgaaggggaaagaaacaagagggtaaattcagagagggtgtaactttcaagtgcttatctttttttcaaacctctgaacaaattgttgatttattttcttcttagtgacagatgaaccattcagtgaaggaagcagtaacgaaatactagtgctgattcagataagatgtgacagaatccttactaaagcagcctgtgaaaaatgtcaatttactagcatgagaaaatttcaagga
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| CDS seq | atggattcacggatgctgctgatgctgatgcagctgctcggctccccgacatcgctcgccgttctcctcctctccttcttccaaggctcggtcggcgtcggcgcaatcaccttcaccttcaccaaccggtgcacggacacggtgtggccgggggtgctgtcgggctccggcacgccgccgctggagaccaccggcttcgcgctctcgccgggggggtcgcgctccctctacgcgccgtcggggtggtcgggccgcttctgggcgcgctccggctgcgaattcgacgactccggcaagggctcctgcgccacgggggactgcggctccggccaggtggagtgccgcggcgcgggcgcctccccgcccgccacgctcgccgagttcaccctcaacggcgccgacggcaaggacttctacgacgtcagcctcgtcgacggctacaacctccccatgctcgtccaggcctccgcccccgactgccccgacaccggctgcctcgtcgacctcaacgagcgctgcccctccgagctccgcgccgacgatggccgcgcttgccgcagcgcctgcgaggcgttcggccgacctgagtactgctgcaatggcgcctacggcaacccggacacctgccacccttcccagtactcgcagctcttcaagtcggcgtgccctaaatcctacagctacgcctacgacgacgccacctccaccttcacctgcaaccacaccgattacaccatcaccttctgcccccgatccactccatccagtgggaattcaaagaacggatcacggagaccgagccacgagcagctcgaagatgcggtgtggctggcgagcttgaaggccagcagtggcgcggggatggctgcaactgcggcatcatggccggcatccttagctttccaatctgccttggcaattgcagtggtgatcctgcttgcccagcaggagcatcccgtattattcagctag
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| Protein seq | MDSRMLLMLMQLLGSPTSLAVLLLSFFQGSVGVGAITFTFTNRCTDTVWPGVLSGSGTPPLETTGFALSPGGSRSLYAPSGWSGRFWARSGCEFDDSGKGSCATGDCGSGQVECRGAGASPPATLAEFTLNGADGKDFYDVSLVDGYNLPMLVQASAPDCPDTGCLVDLNERCPSELRADDGRACRSACEAFGRPEYCCNGAYGNPDTCHPSQYSQLFKSACPKSYSYAYDDATSTFTCNHTDYTITFCPRSTPSSGNSKNGSRRPSHEQLEDAVWLASLKASSGAGMAATAASWPASLAFQSALAIAVVILLAQQEHPVLFS |
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| Function | Thaumatin-like protein 1 [UniProtKB/Swiss-Prot:A0A1P8B554] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0024350 | OsKeNa_08g0024350.01 | Chr08 | 28646658 | 28649522 | + | NAM | ||
| CDS seq | atggattcacggatgctgctgatgctgatgcagctgctcggctccccgacatcgctcgccgttctcctcctctccttcttccaaggctcggtcggcgtcggcgcaatcaccttcaccttcaccaaccggtgcacggacacggtgtggccgggggtgctgtcgggctccggcacgccgccgctggagaccaccggcttcgcgctctcgccgggggggtcgcgctccctctacgcgccgtcggggtggtcgggccgcttctgggcgcgctccggctgcgaattcgacgactccggcaagggctcctgcgccacgggggactgcggctccggccaggtggagtgccgcggcgcgggcgcctccccgcccgccacgctcgccgagttcaccctcaacggcgccgacggcaaggacttctacgacgtcagcctcgtcgacggctacaacctccccatgctcgtccaggcctccgcccccgactgccccgacaccggctgcctcgtcgacctcaacgagcgctgcccctccgagctccgcgccgacgatggccgcgcttgccgcagcgcctgcgaggcgttcggccgacctgagtactgctgcaatggcgcctacggcaacccggacacctgccacccttcccagtactcgcagctcttcaagtcggcgtgccctaaatcctacagctacgcctacgacgacgccacctccaccttcacctgcaaccacaccgattacaccatcaccttctgcccccgatccactccatccagtgggaattcaaagaacggatcacggagaccgagccacgagcagctcgaagatgcggtgtggctggcgagcttgaaggccagcagtggcgcggggatggctgcaactgcggcatcatggccggcatccttagctttccaatctgccttggcaattgcagtggtgatcctgcttgcccagcaggagcatcccgtattattcagctag
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| Protein seq | MDSRMLLMLMQLLGSPTSLAVLLLSFFQGSVGVGAITFTFTNRCTDTVWPGVLSGSGTPPLETTGFALSPGGSRSLYAPSGWSGRFWARSGCEFDDSGKGSCATGDCGSGQVECRGAGASPPATLAEFTLNGADGKDFYDVSLVDGYNLPMLVQASAPDCPDTGCLVDLNERCPSELRADDGRACRSACEAFGRPEYCCNGAYGNPDTCHPSQYSQLFKSACPKSYSYAYDDATSTFTCNHTDYTITFCPRSTPSSGNSKNGSRRPSHEQLEDAVWLASLKASSGAGMAATAASWPASLAFQSALAIAVVILLAQQEHPVLFS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0024350 | OsKeNa_08g0024350.02 | Chr08 | 28646658 | 28648573 | + | IsoSeq | ||
| CDS seq | cggccacgagcacgagcacgagcaccacctccccgcccgccacgctcgccgagttcaccctcaacggcgccgacggcaaggacttctacgacgtcagcctcgtcgacggctacaacctccccatgctcgtccaggcctccgcccccgactgccccgacaccggctgcctcgtcgacctcaacgagcgctgcccctccgagctccgcgccgacgatggccgcgcttgccgcagcgcctgcgaggcgttcggccgacctgagtactgctgcaatggcgcctacggcaacccggacacctgccacccttcccagtactcgcagctcttcaagtcggcgtgccctaaatcctacagctacgcctacgacgacgccacctccaccttcacctgcaaccacaccgattacaccatcaccttctgcccccgatccactccatccagtgggaattcaaagaacggatcacggagaccgagccacgagcagctcgaagatgcggtgtggctggcga
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| Protein seq | RPRARARAPPPRPPRSPSSPSTAPTARTSTTSASSTATTSPCSSRPPPPTAPTPAASSTSTSAAPPSSAPTMAALAAAPARRSADLSTAAMAPTATRTPATLPSTRSSSSRRALNPTATPTTTPPPPSPATTPITPSPSAPDPLHPVGIQRTDHGDRATSSSKMRCGWR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.111994 | 6.056869 | 2.612777 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0517800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43510 | RBH | 0.208178 | 0.651902 | 0.521057 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0517800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024570 | RBH | 0.0 | 4.226941 | 3.860902 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017950 | RBH | 0.107547 | 0.571874 | 0.665076 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024350 | RBH | 0.354659 | 8.079769 | 4.238657 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024680 | RBH | 0.033639 | 0.040077 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024320 | RBH | 0.886774 | 10.204002 | 5.769382 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0437300 | RBH | 1.4476195 | 6.1668685 | 2.988044 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024160 | RBH | 0.081895 | 0.339519 | 0.774841 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0456700 | RBH | 2.5027455 | 6.5355155 | 8.8089115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023530 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023890 | RBH | 0.0 | 7.238907 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023710 | RBH | 0.0 | 13.550876 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024590 | RBH | 0.188293 | 1.023719 | 0.793739 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023800 | RBH | 0.049775 | 4.067025 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024030 | RBH | 0.0 | 0.628219 | 0.693675 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024190 | RBH | 0.0 | 7.423384 | 0.739439 |
